Strain Fitness in Sphingobium sp. HT1-2 around GFF4090

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,107,670	-		GFF4089	0.66	+0.0
4,107,670	-		GFF4089	0.66	-0.4
4,107,672	+		GFF4089	0.66	-1.8
4,107,672	+		GFF4089	0.66	+0.7
4,107,672	+		GFF4089	0.66	-0.8
4,107,672	+		GFF4089	0.66	-0.5
4,107,672	+		GFF4089	0.66	-0.5
4,107,672	+		GFF4089	0.66	-0.5
4,107,678	+		GFF4089	0.66	-2.0
4,107,680	-		GFF4089	0.66	-1.5
4,107,680	-		GFF4089	0.66	+0.1
4,107,705	-		GFF4089	0.67	-0.3
4,107,707	+		GFF4089	0.67	-1.6
4,107,707	+		GFF4089	0.67	-0.0
4,107,712	+		GFF4089	0.67	-0.3
4,107,715	-		GFF4089	0.67	-1.2
4,107,730	-		GFF4089	0.68	-2.5
4,107,747	+		GFF4089	0.68	-0.4
4,107,752	-		GFF4089	0.69	-1.3
4,107,771	+		GFF4089	0.69	-0.4
4,107,781	+		GFF4089	0.70	+0.4
4,107,789	-		GFF4089	0.70	-1.2
4,107,789	-		GFF4089	0.70	+0.2
4,107,789	-		GFF4089	0.70	-0.9
4,107,832	+		GFF4089	0.71	-1.4
4,107,851	+		GFF4089	0.72	-1.4
4,107,886	-		GFF4089	0.73	-1.0
4,107,886	-		GFF4089	0.73	-1.7
4,107,886	-		GFF4089	0.73	+0.5
4,107,934	+		GFF4089	0.75	+0.0
4,107,934	+		GFF4089	0.75	-0.2
4,107,934	+		GFF4089	0.75	+0.5
4,107,934	+		GFF4089	0.75	+0.8
4,107,934	+		GFF4089	0.75	-0.2
4,107,934	+		GFF4089	0.75	-1.5
4,107,934	+		GFF4089	0.75	-1.4
4,107,940	+		GFF4089	0.75	-1.2
4,107,942	-		GFF4089	0.75	+0.5
4,107,942	-		GFF4089	0.75	-0.2
4,107,942	-		GFF4089	0.75	-0.9
4,107,942	-		GFF4089	0.75	-0.1
4,107,943	-		GFF4089	0.75	-0.3
4,107,973	+		GFF4089	0.77	+0.4
4,107,978	+		GFF4089	0.77	-0.5
4,107,981	+		GFF4089	0.77	-0.5
4,107,981	-		GFF4089	0.77	+0.4
4,107,981	-		GFF4089	0.77	+0.5
4,107,981	-		GFF4089	0.77	-0.6
4,107,981	-		GFF4089	0.77	-0.5
4,107,981	-		GFF4089	0.77	-0.5
4,107,983	+		GFF4089	0.77	+0.5
4,107,983	+		GFF4089	0.77	-1.2
4,107,991	+		GFF4089	0.77	-2.2
4,108,032	-		GFF4089	0.79	-1.5
4,108,057	+		GFF4089	0.80	-0.3
4,108,057	+		GFF4089	0.80	-1.1
4,108,057	-		GFF4089	0.80	-1.7
4,108,063	+		GFF4089	0.80	+0.1
4,108,065	-		GFF4089	0.80	-0.3
4,108,065	-		GFF4089	0.80	+0.4
4,108,072	+		GFF4089	0.80	-0.0
4,108,105	-		GFF4089	0.81	-0.6
4,108,108	+		GFF4089	0.81	-1.6
4,108,116	-		GFF4089	0.82	-0.2
4,108,116	-		GFF4089	0.82	+1.1
4,108,116	-		GFF4089	0.82	-0.5
4,108,116	-		GFF4089	0.82	-2.5
4,108,127	+		GFF4089	0.82	+0.0
4,108,135	-		GFF4089	0.82	-0.6
4,108,144	+		GFF4089	0.83	-0.8
4,108,195	+		GFF4089	0.85	-0.1
4,108,207	+		GFF4089	0.85	-0.9
4,108,207	+		GFF4089	0.85	+0.1
4,108,207	+		GFF4089	0.85	-2.5
4,108,207	+		GFF4089	0.85	+0.5
4,108,207	+		GFF4089	0.85	+0.3
4,108,207	+		GFF4089	0.85	-1.3
4,108,207	+		GFF4089	0.85	-0.2
4,108,207	+		GFF4089	0.85	-0.5
4,108,207	+		GFF4089	0.85	+0.3
4,108,212	+		GFF4089	0.85	+0.3
4,108,212	+		GFF4089	0.85	-1.4
4,108,213	-		GFF4089	0.85	-1.2
4,108,215	-		GFF4089	0.85	-0.7
4,108,215	-		GFF4089	0.85	+0.3
4,108,215	-		GFF4089	0.85	+0.7
4,108,215	-		GFF4089	0.85	-1.2
4,108,215	-		GFF4089	0.85	-1.1
4,108,217	+		GFF4089	0.85	+0.3
4,108,217	+		GFF4089	0.85	-0.7
4,108,217	+		GFF4089	0.85	+0.4
4,108,220	-		GFF4089	0.86	-0.6
4,108,220	-		GFF4089	0.86	-2.4
4,108,220	-		GFF4089	0.86	-0.2
4,108,220	-		GFF4089	0.86	-0.2
4,108,220	-		GFF4089	0.86	-0.0
4,108,225	-		GFF4089	0.86	-1.7
4,108,225	-		GFF4089	0.86	-0.8
4,108,225	-		GFF4089	0.86	-1.1
4,108,230	-		GFF4089	0.86	-1.4
4,108,230	-		GFF4089	0.86	-0.5
4,108,231	+		GFF4089	0.86	+0.4
4,108,232	+		GFF4089	0.86	-0.4
4,108,239	-		GFF4089	0.86	-1.8
4,108,239	-		GFF4089	0.86	-0.5
4,108,239	-		GFF4089	0.86	+0.0
4,108,258	+		GFF4089	0.87	-0.1
4,108,264	+		GFF4089	0.87	+0.9
4,108,281	+		GFF4089	0.88	+1.3
4,108,281	+		GFF4089	0.88	+1.0
4,108,281	+		GFF4089	0.88	+0.2
4,108,289	-		GFF4089	0.88	-0.7
4,108,289	-		GFF4089	0.88	-0.7
4,108,289	-		GFF4089	0.88	-2.5
4,108,321	+		GFF4089	0.89	-1.0
4,108,323	+		GFF4089	0.89	-0.6
4,108,323	+		GFF4089	0.89	+1.5
4,108,323	+		GFF4089	0.89	+0.3
4,108,323	+		GFF4089	0.89	-0.2
4,108,323	+		GFF4089	0.89	-2.0
4,108,323	+		GFF4089	0.89	+0.1
4,108,323	+		GFF4089	0.89	-0.2
4,108,323	+		GFF4089	0.89	-1.8
4,108,323	+		GFF4089	0.89	-0.1
4,108,323	+		GFF4089	0.89	+0.3
4,108,329	-		GFF4089	0.90	-0.3
4,108,331	-		GFF4089	0.90	-0.2
4,108,331	-		GFF4089	0.90	+1.2
4,108,331	-		GFF4089	0.90	+0.5
4,108,331	-		GFF4089	0.90	-2.3
4,108,331	-		GFF4089	0.90	-0.3
4,108,331	-		GFF4089	0.90	-2.1
4,108,331	-		GFF4089	0.90	+0.7
4,108,331	-		GFF4089	0.90	+0.5
4,108,331	-		GFF4089	0.90	-0.2
4,108,362	-				-0.6
4,108,379	-				+0.3
4,108,388	-				-1.2
4,108,403	-				+0.9
4,108,406	+				+0.5
4,108,408	+				+0.3
4,108,421	-				+0.7
4,108,430	+				-2.1
4,108,430	+				-0.0
4,108,438	-				+0.8
4,108,441	+				-0.1
4,108,443	+				+0.5
4,108,454	+				-0.9
4,108,454	+				+0.8
4,108,457	-				-0.7
4,108,464	+				-1.5
4,108,506	+				+0.6
4,108,507	+				+0.4
4,108,507	+				-0.1
4,108,507	+				-1.5
4,108,507	+				-0.4
4,108,515	-				-0.8
4,108,516	-				-0.5
4,108,519	+				-1.0
4,108,519	+				-0.3
4,108,535	-				+0.4
4,108,535	-				-0.9
4,108,555	-				-1.1
4,108,588	+				+0.1
4,108,588	+				-0.1
4,108,588	+				-0.6
4,108,588	+				-0.8
4,108,588	+				-0.6
4,108,588	+				-0.5
4,108,588	+				-0.5
4,108,588	+				-0.3
4,108,588	+				-2.3
4,108,588	+				-1.4
4,108,588	+				-1.2
4,108,588	+				-1.2
4,108,588	+				+1.6
4,108,588	+				-0.1
4,108,588	+				-1.6
4,108,588	+				+1.1
4,108,588	+				-1.5
4,108,594	-				+0.4
4,108,596	-				-1.1
4,108,596	-				-0.0
4,108,596	-				-1.6
4,108,596	-				+0.2
4,108,596	-				-0.2
4,108,596	-				+1.3
4,108,596	-				-0.8
4,108,596	-				-0.8
4,108,596	-				-0.0
4,108,596	-				-1.1
4,108,596	-				-1.1
4,108,596	-				-1.5
4,108,596	-				-0.5
4,108,596	-				+0.2
4,108,596	-				-1.2
4,108,596	-				-0.4
4,108,641	-				-1.7
4,108,651	-				+0.3
4,108,658	+				-0.2
4,108,667	+				-0.5
4,108,672	+				-0.2
4,108,672	+				-1.1
4,108,672	+				+0.7
4,108,672	+				+0.5
4,108,672	+				-1.5
4,108,672	+				-0.6
4,108,672	+				-1.2
4,108,672	+				+0.3
4,108,672	+				-1.1
4,108,680	-				+0.2
4,108,680	-				-0.8
4,108,680	-				-0.5
4,108,680	-				-2.7
4,108,680	-				-1.1
4,108,680	-				-2.5
4,108,680	-				-0.7
4,108,680	-				-1.6
4,108,680	-				+0.6
4,108,694	+				+0.1
4,108,699	+				+1.2
4,108,699	+				+0.5
4,108,699	+				-0.4
4,108,707	-				-1.3
4,108,714	+				+0.4
4,108,714	+				-0.3
4,108,714	+				+1.0
4,108,714	+				-0.4
4,108,714	+				+1.3
4,108,714	+				-0.3
4,108,714	+				-0.6
4,108,719	+				-0.2
4,108,722	-				-0.0
4,108,722	-				+1.3
4,108,722	-				-0.3
4,108,722	-				-0.6
4,108,722	-				-0.4
4,108,722	-				+0.3
4,108,722	-				-0.5
4,108,722	-				+0.7
4,108,722	-				-0.3
4,108,722	-				-1.9
4,108,722	-				-0.4
4,108,722	-				-1.3
4,108,727	-				+0.4
4,108,728	+				-1.5
4,108,733	+				-0.4
4,108,733	+				-1.5
4,108,735	+				-1.4
4,108,738	+				-0.3
4,108,749	+				-1.1
4,108,756	+				+0.5
4,108,758	-				-3.5
4,108,758	-				+0.7
4,108,772	+				-0.3
4,108,773	-				-0.5
4,108,801	+		GFF4090	0.12	+0.1
4,108,813	+		GFF4090	0.13	-1.6
4,108,821	-		GFF4090	0.14	+0.6
4,108,832	+		GFF4090	0.15	-0.4
4,108,832	-		GFF4090	0.15	+0.4
4,108,838	+		GFF4090	0.16	-1.1
4,108,839	+		GFF4090	0.16	-0.2
4,108,840	-		GFF4090	0.16	-1.2
4,108,845	+		GFF4090	0.16	-0.7
4,108,845	+		GFF4090	0.16	-0.4
4,108,845	+		GFF4090	0.16	+0.4
4,108,855	+		GFF4090	0.17	-0.1
4,108,964	+		GFF4090	0.28	+0.5
4,108,972	+		GFF4090	0.28	-0.7
4,108,972	+		GFF4090	0.28	-0.7
4,108,980	-		GFF4090	0.29	-1.3
4,108,980	-		GFF4090	0.29	+0.7
4,108,980	-		GFF4090	0.29	+0.7
4,108,980	-		GFF4090	0.29	+0.3
4,108,980	-		GFF4090	0.29	+1.3
4,108,986	+		GFF4090	0.30	+0.1
4,108,986	+		GFF4090	0.30	-1.9
4,108,989	-		GFF4090	0.30	-1.4
4,108,992	+		GFF4090	0.30	-0.5
4,108,994	-		GFF4090	0.30	-1.5
4,108,994	-		GFF4090	0.30	-0.2
4,109,021	-		GFF4090	0.33	-1.9
4,109,027	+		GFF4090	0.34	-0.4
4,109,067	+		GFF4090	0.37	-0.3
4,109,075	+		GFF4090	0.38	-0.4
4,109,075	+		GFF4090	0.38	-1.2
4,109,075	-		GFF4090	0.38	+0.7
4,109,082	+		GFF4090	0.39	+0.5
4,109,083	-		GFF4090	0.39	+1.1
4,109,085	+		GFF4090	0.39	+0.6
4,109,090	-		GFF4090	0.39	+0.3
4,109,093	-		GFF4090	0.40	+0.0
4,109,093	-		GFF4090	0.40	+0.2
4,109,093	-		GFF4090	0.40	-1.7
4,109,109	+		GFF4090	0.41	-0.5
4,109,109	+		GFF4090	0.41	-0.2
4,109,118	-		GFF4090	0.42	-0.1
4,109,118	-		GFF4090	0.42	-0.1
4,109,120	+		GFF4090	0.42	-1.6
4,109,120	+		GFF4090	0.42	+0.4
4,109,128	-		GFF4090	0.43	-1.4
4,109,128	-		GFF4090	0.43	+0.7
4,109,156	+		GFF4090	0.46	+1.4
4,109,170	+		GFF4090	0.47	-0.1
4,109,171	+		GFF4090	0.47	-1.9
4,109,173	-		GFF4090	0.47	-2.4
4,109,211	-		GFF4090	0.51	+0.3
4,109,229	+		GFF4090	0.52	-1.5
4,109,240	-		GFF4090	0.53	+1.0
4,109,244	-		GFF4090	0.54	-1.4
4,109,248	+		GFF4090	0.54	-2.1
4,109,250	-		GFF4090	0.54	+0.2
4,109,321	+		GFF4090	0.61	+0.2
4,109,321	+		GFF4090	0.61	-0.3
4,109,326	+		GFF4090	0.62	-1.8
4,109,326	+		GFF4090	0.62	+0.5
4,109,326	+		GFF4090	0.62	+0.2
4,109,334	-		GFF4090	0.62	+0.6
4,109,334	-		GFF4090	0.62	-0.5
4,109,334	-		GFF4090	0.62	+0.9
4,109,334	-		GFF4090	0.62	+0.2
4,109,339	+		GFF4090	0.63	-0.5
4,109,339	-		GFF4090	0.63	+0.3
4,109,347	-		GFF4090	0.63	+0.8
4,109,348	+		GFF4090	0.64	-0.6
4,109,353	-		GFF4090	0.64	-0.2
4,109,360	+		GFF4090	0.65	-0.7
4,109,363	-		GFF4090	0.65	+1.1
4,109,365	+		GFF4090	0.65	+1.6
4,109,370	+		GFF4090	0.66	+0.0
4,109,370	+		GFF4090	0.66	-2.8
4,109,370	+		GFF4090	0.66	-1.2
4,109,370	+		GFF4090	0.66	+0.4
4,109,370	+		GFF4090	0.66	-0.3
4,109,373	-		GFF4090	0.66	-1.4
4,109,378	-		GFF4090	0.66	-2.5
4,109,378	-		GFF4090	0.66	-1.6
4,109,378	-		GFF4090	0.66	+1.9
4,109,378	-		GFF4090	0.66	-0.2
4,109,378	-		GFF4090	0.66	-1.4
4,109,378	-		GFF4090	0.66	+0.4
4,109,378	-		GFF4090	0.66	+0.4
4,109,378	-		GFF4090	0.66	-1.1
4,109,390	-		GFF4090	0.68	-0.8
4,109,396	+		GFF4090	0.68	+0.2
4,109,405	+		GFF4090	0.69	+0.3
4,109,441	+		GFF4090	0.72	+1.0
4,109,455	+		GFF4090	0.74	-1.9
4,109,461	+		GFF4090	0.74	-0.3
4,109,463	-		GFF4090	0.74	-0.3
4,109,463	-		GFF4090	0.74	-1.2
4,109,485	+		GFF4090	0.76	+0.2
4,109,486	+		GFF4090	0.76	+1.1
4,109,493	-		GFF4090	0.77	+0.0
4,109,493	-		GFF4090	0.77	-1.0
4,109,494	+		GFF4090	0.77	+0.5
4,109,495	+		GFF4090	0.77	-1.4
4,109,502	+		GFF4090	0.78	+0.9
4,109,502	-		GFF4090	0.78	-1.3
4,109,517	+		GFF4090	0.79	-0.7
4,109,546	+		GFF4090	0.82	-2.0
4,109,551	+		GFF4090	0.83	-1.5
4,109,551	+		GFF4090	0.83	-0.1
4,109,551	+		GFF4090	0.83	-1.8
4,109,551	+		GFF4090	0.83	-0.4
4,109,551	+		GFF4090	0.83	+0.9
4,109,554	+		GFF4090	0.83	-1.1
4,109,554	-		GFF4090	0.83	+0.6
4,109,556	+		GFF4090	0.83	+1.3
4,109,559	-		GFF4090	0.83	+0.4
4,109,564	-		GFF4090	0.84	-0.0
4,109,564	-		GFF4090	0.84	-0.5
4,109,564	-		GFF4090	0.84	-0.2
4,109,574	+		GFF4090	0.85	+0.1
4,109,584	+		GFF4090	0.86	-0.8
4,109,584	-		GFF4090	0.86	+0.8
4,109,604	-		GFF4090	0.88	-2.3
4,109,611	-		GFF4090	0.88	+0.6
4,109,632	-				+0.6
4,109,632	-				+0.1
4,109,664	+				-1.9
4,109,669	+				-0.1
4,109,715	+				+0.5
4,109,720	+				-0.7
4,109,723	-				-0.5
4,109,723	-				+0.4
4,109,725	+				+0.9
4,109,725	+				-0.1
4,109,728	-				+0.7
4,109,732	+				-0.5
4,109,732	+				+1.2
4,109,732	+				-1.1
4,109,732	+				-2.6
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4,109,738	-				-0.5
4,109,740	-				+0.7
4,109,740	-				-0.2
4,109,740	-				-0.2
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4,109,754	+				+0.6
4,109,754	+				-0.7
4,109,754	+				+1.0
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4,109,802	+				+0.1
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4,110,172	+		GFF4091	0.82	-1.8
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4,110,245	+				-0.1
4,110,262	+				-2.4
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4,110,280	+				+0.7
4,110,280	+				-0.8
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4,110,294	+				+0.1
4,110,296	-				+0.9
4,110,309	+				-0.1
4,110,309	+				-1.7
4,110,309	+				-0.7
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4,110,317	-				-0.2
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4,110,353	-				+0.5
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4,110,363	-				-1.8
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4,110,373	-				+0.6
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4,110,382	+				+1.3
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4,110,382	+				+0.3
4,110,382	+				-2.2
4,110,382	+				-1.3
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4,110,382	+				+0.6
4,110,382	+				-0.5
4,110,382	+				-1.2
4,110,382	+				+0.3
4,110,382	+				-2.4
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4,110,390	-				+0.4
4,110,390	-				-0.5
4,110,390	-				-0.7
4,110,390	-				-1.3
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4,110,400	+				+0.1
4,110,414	+				-0.8
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4,110,477	-				+0.2
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4,110,502	+				-1.4
4,110,502	+				-1.0
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4,110,557	+				+0.5
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4,110,569	+				-0.1
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