Strain Fitness in Sphingobium sp. HT1-2 around GFF4082

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,093,151	+				-0.3
4,093,166	+				-2.4
4,093,186	+				+0.4
4,093,186	+				-1.0
4,093,194	-				-0.9
4,093,194	-				-0.4
4,093,204	+				-1.3
4,093,205	+				-0.6
4,093,212	+				+0.4
4,093,212	+				-0.4
4,093,212	+				-0.5
4,093,212	+				-1.7
4,093,212	+				+0.1
4,093,212	+				-0.7
4,093,212	+				-0.2
4,093,212	+				-1.4
4,093,212	+				-0.4
4,093,213	-				-0.0
4,093,219	+				-0.4
4,093,220	-				-1.0
4,093,220	-				-0.5
4,093,220	-				-0.3
4,093,220	-				-2.1
4,093,220	-				+0.4
4,093,220	-				-0.3
4,093,220	-				-1.4
4,093,226	+				-1.2
4,093,226	+				-2.3
4,093,234	-				-0.4
4,093,234	-				-0.6
4,093,244	-				-0.7
4,093,244	-				-1.9
4,093,244	-				+1.2
4,093,260	+				-1.3
4,093,287	-				-1.6
4,093,288	+				-0.9
4,093,302	-				+0.1
4,093,335	+				-0.4
4,093,343	-				+0.0
4,093,354	+				+0.4
4,093,369	+		GFF4081	0.11	+2.0
4,093,369	+		GFF4081	0.11	-1.6
4,093,377	-		GFF4081	0.12	+0.4
4,093,448	+		GFF4081	0.22	+1.1
4,093,448	+		GFF4081	0.22	-0.5
4,093,456	-		GFF4081	0.23	+0.5
4,093,494	+		GFF4081	0.28	-1.1
4,093,494	+		GFF4081	0.28	+0.7
4,093,502	-		GFF4081	0.30	-2.2
4,093,502	-		GFF4081	0.30	+2.1
4,093,533	+		GFF4081	0.34	-0.2
4,093,533	+		GFF4081	0.34	-0.5
4,093,533	+		GFF4081	0.34	-0.7
4,093,541	-		GFF4081	0.35	-0.1
4,093,541	-		GFF4081	0.35	-0.1
4,093,541	-		GFF4081	0.35	+1.9
4,093,581	-		GFF4081	0.41	+1.6
4,093,587	+		GFF4081	0.41	+1.2
4,093,587	+		GFF4081	0.41	+1.6
4,093,595	-		GFF4081	0.43	+0.1
4,093,595	-		GFF4081	0.43	-0.8
4,093,603	+		GFF4081	0.44	+0.1
4,093,639	+		GFF4081	0.49	-0.6
4,093,644	+		GFF4081	0.49	+0.4
4,093,644	+		GFF4081	0.49	+0.1
4,093,647	-		GFF4081	0.50	+0.4
4,093,649	+		GFF4081	0.50	+0.4
4,093,652	-		GFF4081	0.51	-1.0
4,093,667	-		GFF4081	0.53	+0.0
4,093,761	+		GFF4081	0.66	+0.3
4,093,761	+		GFF4081	0.66	+2.2
4,093,769	-		GFF4081	0.67	-1.6
4,093,774	+		GFF4081	0.68	-0.5
4,093,776	-		GFF4081	0.68	-0.8
4,093,836	+		GFF4081	0.76	+0.5
4,093,836	+		GFF4081	0.76	+0.7
4,093,844	-		GFF4081	0.77	+0.9
4,093,865	+		GFF4081	0.80	+0.2
4,093,865	+		GFF4081	0.80	-0.7
4,093,868	-		GFF4081	0.81	-2.2
4,093,868	-		GFF4081	0.81	+1.8
4,093,873	-		GFF4081	0.82	-1.1
4,093,896	+		GFF4081	0.85	+1.1
4,093,904	+		GFF4081	0.86	+1.1
4,093,919	+		GFF4081	0.88	-1.2
4,093,927	-		GFF4081	0.89	+0.9
4,093,938	+				+0.6
4,093,938	+				-0.5
4,093,946	-				+0.8
4,093,946	-				-0.1
4,093,946	-				-0.3
4,093,961	-				+0.7
4,093,961	-				-0.7
4,094,004	-				+1.7
4,094,004	-				+0.4
4,094,026	+				+0.2
4,094,026	+				-1.3
4,094,056	-				-0.6
4,094,067	+				+0.7
4,094,075	-				-1.1
4,094,076	-				+0.1
4,094,082	-				-1.5
4,094,103	-		GFF4082	0.11	-0.2
4,094,118	+		GFF4082	0.14	-1.3
4,094,167	-		GFF4082	0.23	+0.4
4,094,168	+		GFF4082	0.23	+1.4
4,094,187	-		GFF4082	0.26	+0.6
4,094,249	+		GFF4082	0.38	+0.0
4,094,254	+		GFF4082	0.38	+0.6
4,094,272	-		GFF4082	0.42	-2.2
4,094,281	+		GFF4082	0.43	-0.2
4,094,282	-		GFF4082	0.44	+0.1
4,094,319	+		GFF4082	0.50	+0.9
4,094,353	+		GFF4082	0.57	+0.6
4,094,358	+		GFF4082	0.58	+0.0
4,094,358	+		GFF4082	0.58	+0.6
4,094,368	+		GFF4082	0.59	+0.3
4,094,368	+		GFF4082	0.59	+1.0
4,094,371	-		GFF4082	0.60	+0.1
4,094,376	-		GFF4082	0.61	+1.2
4,094,376	-		GFF4082	0.61	-0.4
4,094,393	-		GFF4082	0.64	+0.7
4,094,393	-		GFF4082	0.64	+0.3
4,094,397	+		GFF4082	0.65	+0.8
4,094,397	+		GFF4082	0.65	+0.4
4,094,404	+		GFF4082	0.66	-1.2
4,094,405	-		GFF4082	0.66	+0.9
4,094,405	-		GFF4082	0.66	-0.5
4,094,405	-		GFF4082	0.66	+1.4
4,094,419	-		GFF4082	0.69	-0.1
4,094,424	+		GFF4082	0.70	+0.4
4,094,432	-		GFF4082	0.71	+0.4
4,094,432	-		GFF4082	0.71	-0.6
4,094,459	+		GFF4082	0.76	+0.7
4,094,499	+		GFF4082	0.83	+0.5
4,094,612	-				+0.5
4,094,704	-				+0.9
4,094,755	+				+0.1
4,094,755	+				-0.5
4,094,760	+				-0.5
4,094,763	-				+0.2
4,094,763	-				+0.0
4,094,763	-				+0.5
4,094,849	-		GFF4083	0.12	-0.7
4,094,883	+		GFF4083	0.15	-0.4
4,094,891	-		GFF4083	0.15	-1.1
4,094,930	+		GFF4083	0.18	+0.9
4,094,930	+		GFF4083	0.18	-2.1
4,094,930	+		GFF4083	0.18	+0.5
4,094,938	-		GFF4083	0.19	+0.0
4,094,945	-		GFF4083	0.19	-0.3
4,094,949	+		GFF4083	0.20	-0.5
4,094,949	+		GFF4083	0.20	-0.6
4,094,952	-		GFF4083	0.20	-0.9
4,094,952	-		GFF4083	0.20	+1.0
4,094,985	+		GFF4083	0.22	-0.7
4,094,991	+		GFF4083	0.23	-2.4
4,094,992	-		GFF4083	0.23	-1.9
4,094,994	-		GFF4083	0.23	-0.7
4,095,010	+		GFF4083	0.24	+0.4
4,095,032	-		GFF4083	0.26	-1.8
4,095,036	+		GFF4083	0.26	+1.4
4,095,044	-		GFF4083	0.27	-0.4
4,095,063	-		GFF4083	0.28	+0.4
4,095,114	+		GFF4083	0.32	-1.1
4,095,114	+		GFF4083	0.32	-0.4
4,095,114	+		GFF4083	0.32	-1.5
4,095,114	+		GFF4083	0.32	+0.0
4,095,114	-		GFF4083	0.32	-0.7
4,095,119	+		GFF4083	0.33	-0.1
4,095,121	+		GFF4083	0.33	-0.0
4,095,122	-		GFF4083	0.33	+0.6
4,095,141	+		GFF4083	0.34	+0.8
4,095,156	+		GFF4083	0.35	-1.4
4,095,193	+		GFF4083	0.38	+1.2
4,095,196	-		GFF4083	0.38	+0.1
4,095,201	-		GFF4083	0.39	-2.1
4,095,213	+		GFF4083	0.40	+0.2
4,095,221	-		GFF4083	0.40	+0.6
4,095,221	-		GFF4083	0.40	-1.8
4,095,236	-		GFF4083	0.42	+1.4
4,095,247	+		GFF4083	0.42	-0.1
4,095,247	+		GFF4083	0.42	-0.4
4,095,247	+		GFF4083	0.42	+1.2
4,095,255	-		GFF4083	0.43	-0.6
4,095,295	+		GFF4083	0.46	+0.7
4,095,295	+		GFF4083	0.46	-1.1
4,095,295	+		GFF4083	0.46	+0.2
4,095,295	+		GFF4083	0.46	+0.0
4,095,295	+		GFF4083	0.46	+1.3
4,095,303	-		GFF4083	0.47	+1.0
4,095,303	-		GFF4083	0.47	+0.6
4,095,312	+		GFF4083	0.47	+0.3
4,095,318	+		GFF4083	0.48	+1.3
4,095,319	+		GFF4083	0.48	-0.6
4,095,344	+		GFF4083	0.50	-0.7
4,095,353	+		GFF4083	0.50	+0.4
4,095,359	-		GFF4083	0.51	+0.4
4,095,361	-		GFF4083	0.51	-1.0
4,095,369	-		GFF4083	0.52	+0.6
4,095,371	-		GFF4083	0.52	-0.5
4,095,389	+		GFF4083	0.53	-1.1
4,095,416	+		GFF4083	0.55	+0.0
4,095,444	+		GFF4083	0.57	-0.7
4,095,444	+		GFF4083	0.57	-2.2
4,095,452	-		GFF4083	0.58	-1.5
4,095,474	-		GFF4083	0.60	+1.0
4,095,474	-		GFF4083	0.60	-0.5
4,095,481	+		GFF4083	0.60	+0.1
4,095,488	+		GFF4083	0.61	+0.2
4,095,494	+		GFF4083	0.61	-0.9
4,095,496	-		GFF4083	0.61	-0.0
4,095,504	+		GFF4083	0.62	-0.3
4,095,507	-		GFF4083	0.62	+1.0
4,095,517	-		GFF4083	0.63	+0.6
4,095,519	-		GFF4083	0.63	+1.8
4,095,532	+		GFF4083	0.64	+0.1
4,095,567	+		GFF4083	0.67	-1.1
4,095,575	-		GFF4083	0.67	-0.4
4,095,575	-		GFF4083	0.67	-1.6
4,095,575	-		GFF4083	0.67	+0.1
4,095,580	-		GFF4083	0.68	-0.7