Strain Fitness in Sphingobium sp. HT1-2 around GFF4078

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,088,109	+		GFF4076	0.23	-0.0
4,088,121	+		GFF4076	0.24	-1.5
4,088,121	+		GFF4076	0.24	+0.1
4,088,121	+		GFF4076	0.24	-0.4
4,088,129	-		GFF4076	0.26	-0.9
4,088,129	-		GFF4076	0.26	-0.4
4,088,142	+		GFF4076	0.28	-1.3
4,088,148	-		GFF4076	0.29	-1.4
4,088,150	-		GFF4076	0.29	-1.7
4,088,150	-		GFF4076	0.29	-1.3
4,088,151	-		GFF4076	0.29	-1.4
4,088,155	+		GFF4076	0.30	-1.0
4,088,155	-		GFF4076	0.30	-1.1
4,088,184	+		GFF4076	0.34	-0.1
4,088,215	-		GFF4076	0.39	-1.7
4,088,327	-		GFF4076	0.55	+0.6
4,088,327	-		GFF4076	0.55	-1.6
4,088,327	-		GFF4076	0.55	-2.1
4,088,365	+		GFF4076	0.61	+0.1
4,088,370	+		GFF4076	0.62	+1.3
4,088,388	+		GFF4076	0.65	+0.4
4,088,388	+		GFF4076	0.65	+1.3
4,088,388	+		GFF4076	0.65	+0.4
4,088,396	-		GFF4076	0.66	-1.6
4,088,479	-		GFF4076	0.78	-2.2
4,088,479	-		GFF4076	0.78	-1.5
4,088,571	+				-1.9
4,088,576	-				+1.4
4,088,579	-				-0.1
4,088,579	-				-1.4
4,088,579	-				+0.0
4,088,592	-				-0.1
4,088,633	-				+1.9
4,088,662	-				+1.0
4,088,684	+				-0.4
4,088,843	+		GFF4077	0.50	-1.6
4,088,990	-				-0.9
4,089,007	+				+0.1
4,089,008	+				+0.1
4,089,015	-				+0.8
4,089,017	+				-0.3
4,089,025	-				+0.6
4,089,026	+				-1.1
4,089,045	+				+1.0
4,089,053	-				+0.4
4,089,103	-				-1.0
4,089,125	-				-0.3
4,089,132	+				-1.5
4,089,140	-				+0.3
4,089,151	+				+1.2
4,089,151	+				+2.4
4,089,151	+				-1.3
4,089,151	+				-0.6
4,089,151	+				+0.8
4,089,153	+				+0.0
4,089,185	+				+0.4
4,089,193	-				+0.1
4,089,193	-				+0.2
4,089,193	-				+1.1
4,089,194	+				-0.5
4,089,194	+				-1.8
4,089,194	+				+0.4
4,089,202	-				+0.9
4,089,210	+				+0.3
4,089,211	+				+0.1
4,089,216	+				-2.0
4,089,216	+				-0.1
4,089,221	+				-0.5
4,089,221	+				+0.3
4,089,222	+				-0.1
4,089,229	-				+1.1
4,089,237	+		GFF4078	0.10	-1.7
4,089,253	+		GFF4078	0.12	-0.8
4,089,253	+		GFF4078	0.12	+0.6
4,089,261	-		GFF4078	0.12	+0.6
4,089,271	-		GFF4078	0.13	-1.6
4,089,272	+		GFF4078	0.13	-0.4
4,089,277	+		GFF4078	0.13	+0.2
4,089,278	+		GFF4078	0.13	-0.4
4,089,278	-		GFF4078	0.13	+0.3
4,089,296	+		GFF4078	0.14	-0.6
4,089,296	-		GFF4078	0.14	-0.6
4,089,308	+		GFF4078	0.15	-0.4
4,089,314	-		GFF4078	0.16	+0.2
4,089,314	-		GFF4078	0.16	-2.2
4,089,314	-		GFF4078	0.16	-0.1
4,089,331	-		GFF4078	0.17	+0.5
4,089,336	+		GFF4078	0.17	-1.5
4,089,347	-		GFF4078	0.18	-1.4
4,089,351	+		GFF4078	0.18	+0.3
4,089,354	-		GFF4078	0.18	+0.7
4,089,364	-		GFF4078	0.19	-0.7
4,089,401	+		GFF4078	0.21	+0.6
4,089,411	+		GFF4078	0.22	-0.4
4,089,444	+		GFF4078	0.24	-0.9
4,089,465	+		GFF4078	0.26	-2.5
4,089,473	-		GFF4078	0.26	+0.7
4,089,497	+		GFF4078	0.28	-0.0
4,089,505	-		GFF4078	0.28	-1.4
4,089,519	+		GFF4078	0.29	+0.9
4,089,535	-		GFF4078	0.30	+0.6
4,089,539	+		GFF4078	0.31	-1.1
4,089,563	+		GFF4078	0.32	-0.1
4,089,586	+		GFF4078	0.34	-1.9
4,089,587	-		GFF4078	0.34	-1.8
4,089,629	+		GFF4078	0.37	+0.0
4,089,631	+		GFF4078	0.37	+0.3
4,089,650	+		GFF4078	0.38	+0.9
4,089,650	+		GFF4078	0.38	+0.6
4,089,658	-		GFF4078	0.39	-0.1
4,089,660	+		GFF4078	0.39	+0.5
4,089,660	-		GFF4078	0.39	-1.4
4,089,693	-		GFF4078	0.41	+1.2
4,089,742	-		GFF4078	0.44	-1.1
4,089,750	-		GFF4078	0.45	-1.2
4,089,764	-		GFF4078	0.46	-1.5
4,089,765	+		GFF4078	0.46	-1.3
4,089,776	+		GFF4078	0.47	-0.3
4,089,784	-		GFF4078	0.47	+0.1
4,089,786	+		GFF4078	0.47	+0.9
4,089,786	+		GFF4078	0.47	+0.2
4,089,786	+		GFF4078	0.47	-0.6
4,089,786	+		GFF4078	0.47	+1.3
4,089,786	+		GFF4078	0.47	-0.1
4,089,786	+		GFF4078	0.47	+1.0
4,089,786	+		GFF4078	0.47	-0.1
4,089,786	+		GFF4078	0.47	-1.0
4,089,794	-		GFF4078	0.48	-0.2
4,089,794	-		GFF4078	0.48	-2.3
4,089,794	-		GFF4078	0.48	+0.1
4,089,794	-		GFF4078	0.48	+0.2
4,089,794	-		GFF4078	0.48	-1.0
4,089,843	-		GFF4078	0.51	+0.9
4,089,858	+		GFF4078	0.52	+0.9
4,089,980	-		GFF4078	0.60	+2.4
4,089,982	+		GFF4078	0.60	-0.3
4,089,982	+		GFF4078	0.60	+0.5
4,089,990	-		GFF4078	0.61	-0.1
4,090,015	+		GFF4078	0.63	+0.5
4,090,015	+		GFF4078	0.63	-0.4
4,090,015	+		GFF4078	0.63	-1.8
4,090,015	+		GFF4078	0.63	-0.6
4,090,015	+		GFF4078	0.63	+0.3
4,090,023	-		GFF4078	0.63	+1.9
4,090,023	-		GFF4078	0.63	+2.0
4,090,023	-		GFF4078	0.63	-0.1
4,090,023	-		GFF4078	0.63	-0.7
4,090,023	-		GFF4078	0.63	+0.1
4,090,023	-		GFF4078	0.63	-0.6
4,090,023	-		GFF4078	0.63	+1.9
4,090,023	-		GFF4078	0.63	-0.6
4,090,023	-		GFF4078	0.63	-0.0
4,090,067	+		GFF4078	0.66	-0.3
4,090,075	-		GFF4078	0.67	+0.1
4,090,075	-		GFF4078	0.67	-0.6
4,090,082	+		GFF4078	0.67	-0.4
4,090,089	+		GFF4078	0.67	+0.4
4,090,101	+		GFF4078	0.68	-0.0
4,090,109	-		GFF4078	0.69	-0.2
4,090,124	-		GFF4078	0.70	-1.4
4,090,134	+		GFF4078	0.70	+2.8
4,090,137	+		GFF4078	0.71	-1.4
4,090,137	+		GFF4078	0.71	-1.7
4,090,137	+		GFF4078	0.71	+0.9
4,090,142	+		GFF4078	0.71	-0.6
4,090,145	-		GFF4078	0.71	+0.7
4,090,145	-		GFF4078	0.71	+0.8
4,090,145	-		GFF4078	0.71	-0.8
4,090,145	-		GFF4078	0.71	+0.2
4,090,150	-		GFF4078	0.72	-2.6
4,090,150	-		GFF4078	0.72	-0.6
4,090,150	-		GFF4078	0.72	+0.8
4,090,226	-		GFF4078	0.77	+0.1
4,090,304	+		GFF4078	0.82	-0.1
4,090,367	+		GFF4078	0.86	-0.6
4,090,367	+		GFF4078	0.86	-2.1
4,090,381	-		GFF4078	0.87	+1.3
4,090,412	+		GFF4078	0.89	+0.6
4,090,415	+		GFF4078	0.89	+0.2
4,090,429	+				+0.6
4,090,430	-				+0.3
4,090,434	+				-1.7
4,090,437	-				+0.4
4,090,441	+				+0.6
4,090,449	-				+0.5
4,090,454	+				-2.2
4,090,455	-				-0.1
4,090,468	+				+0.1
4,090,481	+				-0.3
4,090,481	+				-1.6
4,090,481	+				-1.1
4,090,489	-				+1.5
4,090,489	-				+0.1
4,090,489	-				+0.2
4,090,489	-				+0.0
4,090,489	-				-0.9
4,090,489	-				-0.1
4,090,520	+				-1.1
4,090,528	-				-1.0
4,090,548	+				-1.9
4,090,556	-				-0.9
4,090,556	-				+0.4
4,090,572	+				-0.6
4,090,602	-				-0.6
4,090,624	+				-2.5
4,090,624	+				-1.7
4,090,627	-				-0.6
4,090,627	-				+0.7
4,090,638	+				-0.5
4,090,669	-		GFF4079	0.12	-0.1
4,090,669	-		GFF4079	0.12	+0.4
4,090,669	-		GFF4079	0.12	-0.6
4,090,669	-		GFF4079	0.12	+0.1
4,090,669	-		GFF4079	0.12	+0.1
4,090,669	-		GFF4079	0.12	+0.9
4,090,721	+		GFF4079	0.20	-0.5
4,090,729	+		GFF4079	0.21	-0.1
4,090,802	+		GFF4079	0.31	-1.4
4,090,868	+		GFF4079	0.40	+0.9
4,090,874	+		GFF4079	0.41	+0.8
4,090,881	-		GFF4079	0.42	-0.3
4,090,881	-		GFF4079	0.42	-0.5
4,090,882	-		GFF4079	0.42	-0.2
4,090,882	-		GFF4079	0.42	+1.1
4,090,886	+		GFF4079	0.42	-1.1
4,090,886	+		GFF4079	0.42	-0.0
4,090,886	+		GFF4079	0.42	+0.9
4,090,894	-		GFF4079	0.43	-0.2
4,090,894	-		GFF4079	0.43	+1.4
4,090,898	+		GFF4079	0.44	-1.3
4,090,904	+		GFF4079	0.45	+0.9
4,090,923	+		GFF4079	0.47	+0.6
4,090,923	+		GFF4079	0.47	+0.4
4,090,923	+		GFF4079	0.47	-0.7
4,090,923	+		GFF4079	0.47	-0.8
4,090,923	+		GFF4079	0.47	-1.0
4,090,931	-		GFF4079	0.48	-0.3
4,090,931	-		GFF4079	0.48	-0.1
4,090,931	-		GFF4079	0.48	-2.1
4,090,931	-		GFF4079	0.48	-0.4
4,090,931	-		GFF4079	0.48	+0.2
4,090,931	-		GFF4079	0.48	+0.2
4,090,931	-		GFF4079	0.48	+0.5
4,090,931	-		GFF4079	0.48	+0.3
4,090,931	-		GFF4079	0.48	-0.6
4,090,941	-		GFF4079	0.50	+0.1
4,091,009	+		GFF4079	0.59	-0.8
4,091,029	+		GFF4079	0.62	-0.3
4,091,029	+		GFF4079	0.62	-0.4
4,091,037	-		GFF4079	0.63	-0.9
4,091,037	-		GFF4079	0.63	+0.6
4,091,038	-		GFF4079	0.63	+0.6
4,091,057	+		GFF4079	0.66	+0.7
4,091,057	+		GFF4079	0.66	-1.6
4,091,057	+		GFF4079	0.66	-0.7
4,091,057	+		GFF4079	0.66	+1.2
4,091,057	+		GFF4079	0.66	+0.1
4,091,057	+		GFF4079	0.66	+0.2
4,091,057	+		GFF4079	0.66	-0.6
4,091,059	-		GFF4079	0.66	+0.4
4,091,059	-		GFF4079	0.66	-0.5
4,091,065	-		GFF4079	0.67	-1.9
4,091,089	-		GFF4079	0.70	-1.3
4,091,096	+		GFF4079	0.71	+0.5
4,091,096	+		GFF4079	0.71	-0.9
4,091,104	-		GFF4079	0.72	-0.9
4,091,104	-		GFF4079	0.72	+0.8
4,091,120	-		GFF4079	0.75	+1.3
4,091,129	+		GFF4079	0.76	-0.6
4,091,131	-		GFF4079	0.76	+0.3
4,091,131	-		GFF4079	0.76	-0.1
4,091,155	-		GFF4079	0.79	+1.4
4,091,157	-		GFF4079	0.80	+0.6
4,091,174	+		GFF4079	0.82	-0.6
4,091,228	-		GFF4079	0.89	+0.6
4,091,236	+				-0.2
4,091,236	+				+0.7
4,091,239	-				-0.9
4,091,252	+				+0.7
4,091,265	-				-0.7
4,091,316	+				-0.4
4,091,341	+				+0.4
4,091,359	-				+0.8
4,091,362	+				-0.1
4,091,362	+				-0.0
4,091,367	+				-0.7
4,091,367	+				+0.0
4,091,367	+				-0.7
4,091,370	-				-1.7
4,091,370	-				+1.0
4,091,382	-				-0.5
4,091,382	-				+0.1
4,091,400	+				-1.3
4,091,414	-				-2.5
4,091,417	+				-0.4
4,091,428	+				-0.9
4,091,430	-				-0.4
4,091,454	-				+0.4
4,091,454	-				+0.3
4,091,494	+				-1.3
4,091,495	+				+1.0
4,091,514	+				+0.7
4,091,524	+				+1.6
4,091,524	+				-0.6
4,091,527	-				+0.4
4,091,527	-				-1.5
4,091,542	+				+0.9
4,091,552	+				-0.1
4,091,571	+				-0.3