Strain Fitness in Sphingobium sp. HT1-2 around GFF4070

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,082,631	-				-1.1
4,082,648	+				-1.4
4,082,648	+				-2.2
4,082,648	+				-2.1
4,082,648	+				-0.2
4,082,656	-				-0.4
4,082,656	-				+0.0
4,082,666	-				+0.0
4,082,670	+				-0.8
4,082,682	+				+0.3
4,082,682	+				-0.7
4,082,682	+				-0.5
4,082,683	+				-2.1
4,082,683	+				+0.0
4,082,690	-				+0.4
4,082,690	-				+1.0
4,082,690	-				-0.0
4,082,690	-				-2.1
4,082,690	-				-1.0
4,082,780	-		GFF4069	0.23	-1.2
4,082,791	+		GFF4069	0.27	-1.4
4,082,799	-		GFF4069	0.29	+1.4
4,082,799	-		GFF4069	0.29	-1.2
4,082,799	-		GFF4069	0.29	-2.4
4,082,799	-		GFF4069	0.29	+0.7
4,082,799	-		GFF4069	0.29	-0.5
4,082,799	-		GFF4069	0.29	+0.8
4,082,799	-		GFF4069	0.29	+0.4
4,082,799	-		GFF4069	0.29	-0.5
4,082,857	-		GFF4069	0.46	-1.3
4,082,872	-		GFF4069	0.50	+0.7
4,082,872	-		GFF4069	0.50	+0.5
4,082,872	-		GFF4069	0.50	+1.0
4,082,872	-		GFF4069	0.50	+0.7
4,082,897	+		GFF4069	0.58	-1.3
4,082,928	-		GFF4069	0.67	+1.3
4,082,937	-		GFF4069	0.70	-0.6
4,082,944	-		GFF4069	0.72	-0.4
4,082,960	-		GFF4069	0.76	-1.2
4,082,975	-		GFF4069	0.81	+0.4
4,082,976	-		GFF4069	0.81	-2.2
4,082,995	-		GFF4069	0.87	-2.4
4,083,001	-		GFF4069	0.88	-0.2
4,083,084	-				-0.1
4,083,089	+				-1.3
4,083,097	-				-0.6
4,083,097	-				-0.6
4,083,098	-				+0.8
4,083,158	-				+0.1
4,083,186	+				+0.1
4,083,194	-				+0.4
4,083,252	-				-0.6
4,083,256	+				-1.4
4,083,311	+				-0.1
4,083,319	-				+0.7
4,083,332	+				-1.4
4,083,338	-				-1.1
4,083,338	-				+0.7
4,083,340	-				+0.1
4,083,354	-				+0.1
4,083,358	+				-1.6
4,083,358	+				-1.4
4,083,358	+				-2.2
4,083,366	-				-0.4
4,083,392	+				+0.3
4,083,397	+				-1.9
4,083,400	-				-0.9
4,083,407	+				+1.1
4,084,221	-				-1.9
4,084,221	-				+0.3
4,084,221	-				-0.9
4,084,221	-				-1.9
4,084,253	-				-1.2
4,084,253	-				+1.4
4,084,253	-				-1.1
4,084,253	-				+0.8
4,084,297	-				-0.5
4,084,310	+				-1.9
4,084,318	-				-0.7
4,084,323	-				+1.0
4,084,323	-				+0.6
4,084,323	-				+1.0
4,084,323	-				-0.7
4,084,334	+				-0.3
4,084,334	+				-0.7
4,084,334	+				-0.8
4,084,334	+				+0.0
4,084,342	-		GFF4071	0.11	+0.4
4,084,350	+		GFF4071	0.12	-0.6
4,084,369	+		GFF4071	0.16	+0.0
4,084,379	+		GFF4071	0.18	-0.2
4,084,381	+		GFF4071	0.19	+0.2
4,084,391	+		GFF4071	0.21	-2.9
4,084,394	-		GFF4071	0.22	+1.7
4,084,410	+		GFF4071	0.25	-0.5
4,084,410	+		GFF4071	0.25	-0.3
4,084,418	-		GFF4071	0.27	-0.3
4,084,447	+		GFF4071	0.33	-0.2
4,084,447	+		GFF4071	0.33	-0.4
4,084,447	+		GFF4071	0.33	-1.2
4,084,450	+		GFF4071	0.33	+0.9
4,084,473	-		GFF4071	0.38	+0.7
4,084,494	+		GFF4071	0.42	+0.5
4,084,503	+		GFF4071	0.44	+0.2
4,084,503	+		GFF4071	0.44	-0.9
4,084,511	-		GFF4071	0.46	+1.9
4,084,533	+		GFF4071	0.50	+0.2
4,084,533	+		GFF4071	0.50	+0.6
4,084,533	+		GFF4071	0.50	-2.3
4,084,541	-		GFF4071	0.52	+0.7
4,084,541	-		GFF4071	0.52	-2.2
4,084,541	-		GFF4071	0.52	+0.4
4,084,554	-		GFF4071	0.55	-0.7
4,084,588	+		GFF4071	0.62	+0.5
4,084,588	+		GFF4071	0.62	-1.4
4,084,592	+		GFF4071	0.63	+1.2
4,084,596	-		GFF4071	0.63	-0.4
4,084,596	-		GFF4071	0.63	-2.0
4,084,596	-		GFF4071	0.63	-1.7
4,084,611	-		GFF4071	0.66	-0.8
4,084,628	+		GFF4071	0.70	-1.4
4,084,642	+		GFF4071	0.73	-0.9
4,084,698	-		GFF4071	0.84	-0.3
4,084,699	-		GFF4071	0.85	-1.6
4,084,706	-		GFF4071	0.86	-0.1
4,084,716	-		GFF4071	0.88	-0.1
4,084,753	+				+0.5
4,084,753	+				-2.1
4,084,761	-				-0.9
4,084,771	+				+0.4
4,084,774	-				-0.5
4,084,774	-				-1.3
4,084,780	+				-1.1
4,084,788	-				+0.1
4,084,788	-				-0.2
4,084,788	-				+0.7
4,084,789	-				-0.1
4,084,827	+				-1.5
4,084,827	+				+1.1
4,084,827	+				-1.4
4,084,827	+				+0.6
4,084,827	+				-1.1
4,084,835	-				-0.2
4,084,837	+				-2.9
4,084,837	+				-1.4
4,084,845	-		GFF4072	0.10	+0.2
4,084,863	-		GFF4072	0.12	-1.3
4,084,874	+		GFF4072	0.14	-0.6
4,084,874	+		GFF4072	0.14	-0.3
4,084,874	-		GFF4072	0.14	+0.0
4,084,879	+		GFF4072	0.15	-1.7
4,084,882	-		GFF4072	0.15	+0.1
4,084,882	-		GFF4072	0.15	-0.3
4,084,882	-		GFF4072	0.15	-0.7
4,084,889	-		GFF4072	0.16	+0.3
4,084,889	-		GFF4072	0.16	-1.6
4,084,905	-		GFF4072	0.18	-0.4
4,084,924	-		GFF4072	0.21	-1.3
4,084,977	+		GFF4072	0.28	-2.9
4,084,980	-		GFF4072	0.28	+0.5
4,084,986	+		GFF4072	0.29	+0.5
4,084,986	+		GFF4072	0.29	+0.0
4,084,986	+		GFF4072	0.29	-0.1
4,084,991	+		GFF4072	0.29	+1.2
4,084,991	+		GFF4072	0.29	-1.8
4,084,991	+		GFF4072	0.29	-1.0
4,084,994	-		GFF4072	0.30	-1.3
4,084,994	-		GFF4072	0.30	+1.6
4,084,994	-		GFF4072	0.30	+0.6
4,084,994	-		GFF4072	0.30	-1.6
4,084,994	-		GFF4072	0.30	-0.2
4,084,994	-		GFF4072	0.30	+0.9
4,084,998	+		GFF4072	0.30	-0.1
4,084,999	-		GFF4072	0.30	-0.4
4,085,008	+		GFF4072	0.32	+0.7
4,085,008	+		GFF4072	0.32	-0.7
4,085,025	-		GFF4072	0.34	-0.7
4,085,048	+		GFF4072	0.37	-0.4
4,085,048	+		GFF4072	0.37	-1.4
4,085,048	+		GFF4072	0.37	-0.2
4,085,048	+		GFF4072	0.37	+0.1
4,085,054	-		GFF4072	0.38	+0.1
4,085,056	-		GFF4072	0.38	+0.7
4,085,058	+		GFF4072	0.38	-0.1
4,085,061	-		GFF4072	0.39	-0.2
4,085,075	+		GFF4072	0.40	-2.6
4,085,086	+		GFF4072	0.42	-0.5
4,085,088	+		GFF4072	0.42	+0.2
4,085,094	-		GFF4072	0.43	-0.6
4,085,095	-		GFF4072	0.43	-0.2
4,085,103	-		GFF4072	0.44	+0.7
4,085,130	-		GFF4072	0.48	-0.2
4,085,130	-		GFF4072	0.48	-1.0
4,085,143	+		GFF4072	0.49	+0.1
4,085,143	+		GFF4072	0.49	+0.5
4,085,148	+		GFF4072	0.50	-1.1
4,085,148	+		GFF4072	0.50	-1.4
4,085,156	-		GFF4072	0.51	-0.5
4,085,156	-		GFF4072	0.51	-1.2
4,085,156	-		GFF4072	0.51	-1.5
4,085,204	+		GFF4072	0.58	+1.1
4,085,205	-		GFF4072	0.58	-0.1