Strain Fitness in Sphingobium sp. HT1-2 around GFF4051

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,063,073	+		GFF4050	0.72	-1.2
4,063,076	+		GFF4050	0.72	-0.5
4,063,163	+		GFF4050	0.77	+0.2
4,063,208	-		GFF4050	0.80	-0.4
4,063,237	-		GFF4050	0.82	-0.4
4,063,282	-		GFF4050	0.85	-0.9
4,063,299	+		GFF4050	0.86	-0.3
4,063,411	-				-1.7
4,063,430	+				-2.3
4,063,518	+				-0.3
4,063,526	-				-0.9
4,063,567	+				-0.6
4,063,572	+				+0.1
4,063,580	+				-2.4
4,063,627	+				-0.9
4,063,628	-				-1.3
4,063,635	-				+1.3
4,063,718	+				-1.5
4,063,727	+				+0.8
4,063,727	+				+1.3
4,063,728	+				-0.4
4,063,735	-				-1.2
4,063,735	-				+0.1
4,063,736	-				+0.1
4,063,736	-				-0.7
4,063,747	+				-0.2
4,063,747	+				-1.1
4,063,750	-				+0.8
4,063,752	+				+0.3
4,063,752	+				-1.6
4,063,757	+				+0.0
4,063,760	-				+0.1
4,063,764	+				-0.5
4,063,765	-				+0.3
4,063,772	-				-1.6
4,063,772	-				-0.2
4,063,772	-				+0.5
4,063,772	-				-0.8
4,063,777	-				-0.5
4,063,793	+				+0.1
4,063,803	-				+1.1
4,063,807	-				+0.8
4,063,811	-				-0.5
4,063,829	+				+1.4
4,063,835	+				-0.1
4,063,835	-				-2.3
4,063,838	-				+0.1
4,063,853	+				-1.8
4,063,855	+				+0.5
4,063,861	-				-0.1
4,063,865	+				-0.5
4,063,896	-				-0.8
4,063,936	+				-0.8
4,063,936	+				-2.1
4,063,936	+				-1.7
4,063,936	+				-1.8
4,063,936	+				-0.4
4,063,936	+				-2.4
4,063,936	+				-1.4
4,063,941	+		GFF4051	0.10	-2.1
4,063,944	-		GFF4051	0.10	+0.4
4,063,944	-		GFF4051	0.10	+0.2
4,063,944	-		GFF4051	0.10	-1.0
4,063,944	-		GFF4051	0.10	-3.6
4,063,944	-		GFF4051	0.10	+0.6
4,063,947	+		GFF4051	0.11	-1.7
4,063,947	+		GFF4051	0.11	+0.8
4,063,949	-		GFF4051	0.11	-0.4
4,063,954	-		GFF4051	0.11	-0.6
4,063,954	-		GFF4051	0.11	-0.1
4,063,955	-		GFF4051	0.11	-0.1
4,063,955	-		GFF4051	0.11	-0.5
4,063,957	+		GFF4051	0.11	+0.1
4,063,965	-		GFF4051	0.12	-0.3
4,063,987	-		GFF4051	0.14	-1.1
4,063,987	-		GFF4051	0.14	-1.6
4,064,049	+		GFF4051	0.18	-0.4
4,064,056	+		GFF4051	0.18	+0.4
4,064,064	-		GFF4051	0.19	-1.1
4,064,064	-		GFF4051	0.19	-1.4
4,064,064	-		GFF4051	0.19	-0.5
4,064,123	+		GFF4051	0.23	-0.7
4,064,158	+		GFF4051	0.26	-0.7
4,064,170	+		GFF4051	0.27	+0.4
4,064,178	-		GFF4051	0.27	+0.3
4,064,184	+		GFF4051	0.28	+0.4
4,064,189	+		GFF4051	0.28	+1.0
4,064,197	-		GFF4051	0.29	-0.2
4,064,218	-		GFF4051	0.30	+0.2
4,064,221	+		GFF4051	0.30	+0.5
4,064,221	+		GFF4051	0.30	-0.5
4,064,221	+		GFF4051	0.30	+0.6
4,064,221	+		GFF4051	0.30	+0.6
4,064,227	-		GFF4051	0.31	+0.2
4,064,229	-		GFF4051	0.31	-0.5
4,064,229	-		GFF4051	0.31	-1.3
4,064,264	+		GFF4051	0.33	+1.5
4,064,277	-		GFF4051	0.34	-1.9
4,064,277	-		GFF4051	0.34	-2.9
4,064,277	-		GFF4051	0.34	+0.8
4,064,279	-		GFF4051	0.34	-1.0
4,064,279	-		GFF4051	0.34	+0.8
4,064,281	+		GFF4051	0.35	-0.4
4,064,281	+		GFF4051	0.35	+0.1
4,064,289	-		GFF4051	0.35	-1.5
4,064,289	-		GFF4051	0.35	+0.0
4,064,302	+		GFF4051	0.36	-1.1
4,064,339	+		GFF4051	0.39	+0.5
4,064,347	-		GFF4051	0.39	-2.4
4,064,356	+		GFF4051	0.40	-0.6
4,064,364	-		GFF4051	0.41	+0.0
4,064,367	+		GFF4051	0.41	+0.2
4,064,372	+		GFF4051	0.41	-2.5
4,064,372	+		GFF4051	0.41	-0.3
4,064,380	-		GFF4051	0.42	-1.0
4,064,380	-		GFF4051	0.42	-0.6
4,064,389	+		GFF4051	0.42	-0.9
4,064,420	-		GFF4051	0.45	-1.5
4,064,482	+		GFF4051	0.49	-0.5
4,064,489	+		GFF4051	0.50	-1.9
4,064,503	-		GFF4051	0.51	+0.7
4,064,509	+		GFF4051	0.51	+0.6
4,064,533	+		GFF4051	0.53	+0.4
4,064,537	+		GFF4051	0.53	-0.9
4,064,537	+		GFF4051	0.53	-2.1
4,064,547	+		GFF4051	0.54	-0.6
4,064,555	-		GFF4051	0.54	-0.3
4,064,555	-		GFF4051	0.54	-0.4
4,064,562	+		GFF4051	0.55	+0.9
4,064,563	+		GFF4051	0.55	-0.3
4,064,566	+		GFF4051	0.55	-0.1
4,064,569	-		GFF4051	0.55	-0.9
4,064,569	-		GFF4051	0.55	-1.5
4,064,570	+		GFF4051	0.55	+0.0
4,064,575	+		GFF4051	0.56	-0.5
4,064,575	+		GFF4051	0.56	+0.0
4,064,575	+		GFF4051	0.56	-0.4
4,064,575	+		GFF4051	0.56	+0.0
4,064,575	+		GFF4051	0.56	+1.3
4,064,577	+		GFF4051	0.56	+0.8
4,064,579	-		GFF4051	0.56	-1.9
4,064,579	-		GFF4051	0.56	+0.2
4,064,583	-		GFF4051	0.56	-1.6
4,064,583	-		GFF4051	0.56	-0.8
4,064,583	-		GFF4051	0.56	-0.0
4,064,583	-		GFF4051	0.56	-1.9
4,064,583	-		GFF4051	0.56	+0.2
4,064,584	-		GFF4051	0.56	-1.3
4,064,615	-		GFF4051	0.59	-0.2
4,064,629	+		GFF4051	0.60	-1.0
4,064,632	-		GFF4051	0.60	-0.8
4,064,641	-		GFF4051	0.60	+0.4
4,064,661	+		GFF4051	0.62	+0.0
4,064,661	+		GFF4051	0.62	-0.7
4,064,661	+		GFF4051	0.62	-0.5
4,064,661	+		GFF4051	0.62	+0.5
4,064,661	+		GFF4051	0.62	-1.3
4,064,661	+		GFF4051	0.62	+1.5
4,064,661	+		GFF4051	0.62	-1.3
4,064,664	-		GFF4051	0.62	-1.6
4,064,664	-		GFF4051	0.62	-2.1
4,064,665	-		GFF4051	0.62	-0.7
4,064,666	+		GFF4051	0.62	-0.7
4,064,669	-		GFF4051	0.62	-1.7
4,064,669	-		GFF4051	0.62	-1.4
4,064,684	+		GFF4051	0.64	-0.2
4,064,689	+		GFF4051	0.64	-0.8
4,064,694	+		GFF4051	0.64	+0.3
4,064,702	-		GFF4051	0.65	-1.9
4,064,741	+		GFF4051	0.68	+0.1
4,064,751	+		GFF4051	0.68	-0.3
4,064,773	+		GFF4051	0.70	-0.3
4,064,781	-		GFF4051	0.71	+0.9
4,064,789	-		GFF4051	0.71	-0.3
4,064,825	-		GFF4051	0.74	-0.5
4,064,835	+		GFF4051	0.74	+0.4
4,064,840	+		GFF4051	0.75	-0.8
4,064,840	+		GFF4051	0.75	+1.6
4,064,845	+		GFF4051	0.75	-0.2
4,064,845	+		GFF4051	0.75	-0.3
4,064,853	-		GFF4051	0.76	-0.8
4,064,853	-		GFF4051	0.76	+0.1
4,064,882	-		GFF4051	0.78	-1.7
4,064,887	+		GFF4051	0.78	-2.3
4,064,890	-		GFF4051	0.78	+0.7
4,064,893	+		GFF4051	0.79	-1.6
4,064,895	-		GFF4051	0.79	+0.1
4,064,895	-		GFF4051	0.79	-3.1
4,064,895	-		GFF4051	0.79	+0.8
4,064,898	+		GFF4051	0.79	+0.3
4,064,898	+		GFF4051	0.79	-0.7
4,064,901	-		GFF4051	0.79	-0.4
4,064,922	+		GFF4051	0.81	+1.1
4,064,922	+		GFF4051	0.81	-1.3
4,064,922	+		GFF4051	0.81	-0.1
4,064,924	+		GFF4051	0.81	+0.7
4,064,926	+		GFF4051	0.81	+0.2
4,064,945	+		GFF4051	0.82	+0.7
4,064,963	-		GFF4051	0.84	+0.8
4,064,963	-		GFF4051	0.84	+0.5
4,064,965	+		GFF4051	0.84	-0.6
4,064,965	+		GFF4051	0.84	-0.4
4,064,965	+		GFF4051	0.84	-0.1
4,064,973	-		GFF4051	0.84	-1.4
4,064,997	-		GFF4051	0.86	-0.8
4,065,008	-		GFF4051	0.87	-0.7
4,065,013	-		GFF4051	0.87	-1.3
4,065,029	+		GFF4051	0.88	-1.5
4,065,047	+		GFF4051	0.90	-2.1
4,065,047	+		GFF4051	0.90	-1.0
4,065,047	+		GFF4051	0.90	-0.5
4,065,050	-		GFF4051	0.90	-0.1
4,065,055	-				-1.8
4,065,064	+				-1.1
4,065,082	+				-2.4
4,065,089	-				-1.2
4,065,132	-				-0.4
4,065,161	-				-0.1
4,065,184	+				-0.0
4,065,184	+				+1.4
4,065,184	+				-0.3
4,065,204	+				+0.2
4,065,204	+				+1.1
4,065,212	-				-0.6
4,065,214	+				-1.3
4,065,214	+				-1.2
4,065,214	+				+0.6
4,065,217	-				-0.7
4,065,222	-				+0.7
4,065,222	-				+0.4
4,065,222	-				-1.6
4,065,222	-				+0.6
4,065,222	-				+0.0
4,065,222	-				-0.3
4,065,222	-				+0.2
4,065,222	-				-1.6
4,065,222	-				-0.1
4,065,222	-				-1.7
4,065,227	-				+1.1
4,065,244	-				+0.6
4,065,248	+				-0.4
4,065,755	+		GFF4052	0.54	-1.2
4,066,178	+				-0.6