Strain Fitness in Sphingobium sp. HT1-2 around GFF4041

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,055,849	+		GFF4039	0.40	+0.3
4,055,852	-		GFF4039	0.41	+0.3
4,055,857	-		GFF4039	0.42	-0.5
4,055,857	-		GFF4039	0.42	-0.5
4,055,857	-		GFF4039	0.42	-0.4
4,055,868	-		GFF4039	0.45	-0.5
4,055,878	-		GFF4039	0.48	-0.4
4,055,921	-		GFF4039	0.59	+1.0
4,055,932	+		GFF4039	0.61	+0.8
4,055,942	-		GFF4039	0.64	-0.9
4,055,943	+		GFF4039	0.64	-0.2
4,055,951	-		GFF4039	0.66	+1.0
4,055,972	-		GFF4039	0.72	+0.4
4,055,977	+		GFF4039	0.73	-1.4
4,055,982	+		GFF4039	0.74	-1.6
4,055,984	+		GFF4039	0.75	+0.2
4,055,984	+		GFF4039	0.75	+0.1
4,055,990	-		GFF4039	0.76	-0.8
4,055,990	-		GFF4039	0.76	-1.1
4,055,992	-		GFF4039	0.77	-0.5
4,055,993	+		GFF4039	0.77	+0.5
4,056,003	+		GFF4039	0.80	+0.7
4,056,003	+		GFF4039	0.80	-0.1
4,056,003	+		GFF4039	0.80	-0.3
4,056,004	+		GFF4039	0.80	-0.4
4,056,004	+		GFF4039	0.80	-0.7
4,056,006	-		GFF4039	0.81	-0.2
4,056,010	+		GFF4039	0.82	-1.9
4,056,011	-		GFF4039	0.82	-0.7
4,056,012	-		GFF4039	0.82	-1.2
4,056,012	-		GFF4039	0.82	-1.0
4,056,012	-		GFF4039	0.82	-0.6
4,056,018	-		GFF4039	0.84	+1.0
4,056,034	+		GFF4039	0.88	-0.4
4,056,039	+		GFF4039	0.89	-0.7
4,056,040	+		GFF4039	0.89	+0.6
4,056,040	-		GFF4039	0.89	-0.5
4,056,047	-				-2.5
4,056,058	-				+1.6
4,056,062	+				+0.6
4,056,062	+				+0.6
4,056,070	-				+1.1
4,056,072	+				-0.2
4,056,082	+				-0.5
4,056,098	-				-1.1
4,056,116	+				+0.4
4,056,128	+				+0.5
4,056,141	-				-0.0
4,056,143	+				+0.8
4,056,143	+				-1.9
4,056,151	-				-0.2
4,056,151	-				-0.3
4,056,151	-				-0.3
4,056,166	+				+0.2
4,056,185	-				+0.4
4,056,185	-				+1.0
4,056,193	+				-0.1
4,056,193	+				+0.1
4,056,193	+				+0.5
4,056,193	-				+0.5
4,056,201	-				-2.4
4,056,201	-				+1.0
4,056,215	+				-1.4
4,056,215	+				-1.1
4,056,215	+				-1.1
4,056,215	+				+0.2
4,056,218	-				-0.3
4,056,223	-				-0.6
4,056,224	-				-0.5
4,056,229	-		GFF4040	0.11	+0.4
4,056,245	-		GFF4040	0.13	-1.8
4,056,247	-		GFF4040	0.13	+0.8
4,056,263	+		GFF4040	0.16	-0.5
4,056,278	+		GFF4040	0.18	-1.1
4,056,286	-		GFF4040	0.19	+0.4
4,056,286	-		GFF4040	0.19	+0.7
4,056,290	+		GFF4040	0.20	-0.1
4,056,296	-		GFF4040	0.21	+0.3
4,056,296	-		GFF4040	0.21	+0.4
4,056,296	-		GFF4040	0.21	+0.7
4,056,296	-		GFF4040	0.21	-2.0
4,056,309	+		GFF4040	0.23	-1.7
4,056,309	+		GFF4040	0.23	-1.0
4,056,317	-		GFF4040	0.24	-0.7
4,056,317	-		GFF4040	0.24	+0.4
4,056,324	+		GFF4040	0.25	-2.7
4,056,336	+		GFF4040	0.27	-0.2
4,056,344	-		GFF4040	0.28	-0.4
4,056,344	-		GFF4040	0.28	-0.4
4,056,355	+		GFF4040	0.30	-1.2
4,056,355	+		GFF4040	0.30	+1.2
4,056,355	+		GFF4040	0.30	-0.5
4,056,363	-		GFF4040	0.31	-2.5
4,056,363	-		GFF4040	0.31	-1.3
4,056,363	-		GFF4040	0.31	-2.0
4,056,363	-		GFF4040	0.31	-1.0
4,056,363	-		GFF4040	0.31	+0.3
4,056,363	-		GFF4040	0.31	-0.4
4,056,365	+		GFF4040	0.31	+0.2
4,056,368	-		GFF4040	0.32	-0.8
4,056,373	-		GFF4040	0.32	-0.3
4,056,395	+		GFF4040	0.36	-1.1
4,056,402	+		GFF4040	0.37	-0.1
4,056,402	+		GFF4040	0.37	-0.6
4,056,402	+		GFF4040	0.37	+1.2
4,056,410	-		GFF4040	0.38	-0.4
4,056,410	-		GFF4040	0.38	-1.5
4,056,417	+		GFF4040	0.39	-0.2
4,056,436	+		GFF4040	0.42	-0.0
4,056,438	+		GFF4040	0.42	-0.8
4,056,438	+		GFF4040	0.42	+0.1
4,056,442	+		GFF4040	0.43	-0.6
4,056,444	-		GFF4040	0.43	-0.1
4,056,444	-		GFF4040	0.43	-0.4
4,056,444	-		GFF4040	0.43	+0.8
4,056,444	-		GFF4040	0.43	+1.0
4,056,446	-		GFF4040	0.43	-1.6
4,056,469	+		GFF4040	0.47	+1.3
4,056,469	+		GFF4040	0.47	-0.0
4,056,477	-		GFF4040	0.48	-0.6
4,056,481	+		GFF4040	0.49	-0.2
4,056,483	+		GFF4040	0.49	+1.1
4,056,483	+		GFF4040	0.49	+0.4
4,056,491	-		GFF4040	0.50	-0.5
4,056,493	+		GFF4040	0.51	-0.9
4,056,501	-		GFF4040	0.52	-0.2
4,056,535	+		GFF4040	0.57	-1.4
4,056,539	-		GFF4040	0.58	-0.1
4,056,568	+		GFF4040	0.62	-0.2
4,056,568	+		GFF4040	0.62	+0.5
4,056,568	+		GFF4040	0.62	-1.3
4,056,568	+		GFF4040	0.62	+0.8
4,056,568	+		GFF4040	0.62	-1.6
4,056,568	+		GFF4040	0.62	-0.5
4,056,568	+		GFF4040	0.62	-0.4
4,056,568	+		GFF4040	0.62	+0.4
4,056,576	-		GFF4040	0.63	-0.3
4,056,576	-		GFF4040	0.63	-2.0
4,056,576	-		GFF4040	0.63	-1.0
4,056,576	-		GFF4040	0.63	+0.4
4,056,576	-		GFF4040	0.63	+0.2
4,056,576	-		GFF4040	0.63	-0.5
4,056,576	-		GFF4040	0.63	-0.4
4,056,576	-		GFF4040	0.63	-0.6
4,056,576	-		GFF4040	0.63	+0.7
4,056,576	-		GFF4040	0.63	+0.3
4,056,576	-		GFF4040	0.63	+0.2
4,056,576	-		GFF4040	0.63	-2.3
4,056,576	-		GFF4040	0.63	-0.2
4,056,576	-		GFF4040	0.63	-0.8
4,056,578	-		GFF4040	0.63	-0.3
4,056,578	-		GFF4040	0.63	-1.9
4,056,581	-		GFF4040	0.64	-2.7
4,056,586	+		GFF4040	0.65	-1.9
4,056,586	+		GFF4040	0.65	-0.7
4,056,586	+		GFF4040	0.65	+0.1
4,056,586	+		GFF4040	0.65	-0.6
4,056,586	-		GFF4040	0.65	-0.2
4,056,594	-		GFF4040	0.66	+0.2
4,056,594	-		GFF4040	0.66	-1.2
4,056,618	-		GFF4040	0.70	+0.7
4,056,620	+		GFF4040	0.70	-0.7
4,056,620	+		GFF4040	0.70	-0.2
4,056,649	+		GFF4040	0.74	+0.2
4,056,657	-		GFF4040	0.75	-2.1
4,056,657	-		GFF4040	0.75	-2.6
4,056,657	-		GFF4040	0.75	-0.3
4,056,667	-		GFF4040	0.77	+0.2
4,056,686	+		GFF4040	0.80	+0.3
4,056,688	+		GFF4040	0.80	-0.4
4,056,693	+		GFF4040	0.81	-3.0
4,056,707	+		GFF4040	0.83	-1.6
4,056,707	+		GFF4040	0.83	-0.3
4,056,707	+		GFF4040	0.83	+0.0
4,056,707	+		GFF4040	0.83	+0.1
4,056,715	-		GFF4040	0.84	-0.0
4,056,715	-		GFF4040	0.84	+0.5
4,056,715	-		GFF4040	0.84	+0.6
4,056,715	-		GFF4040	0.84	-2.5
4,056,715	-		GFF4040	0.84	-0.3
4,056,715	-		GFF4040	0.84	-1.1
4,056,725	+		GFF4040	0.86	-1.1
4,056,730	-		GFF4040	0.87	+0.2
4,056,766	+				-0.5
4,056,766	+				+0.1
4,056,766	+				-0.1
4,056,766	+				-0.5
4,056,766	+				+1.7
4,056,766	+				+0.8
4,056,771	+				+0.7
4,056,774	-				-1.0
4,056,774	-				-2.2
4,056,774	-				+0.3
4,056,774	-				+0.5
4,056,774	-				-0.7
4,056,784	-				+0.3
4,056,801	+				-0.3
4,056,802	+				+0.3
4,056,810	-				+0.8
4,057,588	+				-2.2
4,057,588	+				+0.1
4,057,596	-				+0.3
4,057,596	-				+0.2
4,057,596	-				-0.1
4,057,620	+				+0.1
4,057,658	+				+0.9
4,057,688	+				-0.9
4,057,688	+				-1.8
4,057,690	-				+0.8
4,057,696	-				-2.4
4,057,696	-				-0.5
4,057,697	-				+0.3
4,057,705	+				-0.1
4,057,733	+				-0.8
4,057,735	-				-2.1
4,057,735	-				-0.7
4,057,780	+		GFF4042	0.11	+0.8
4,057,788	-		GFF4042	0.13	+1.3
4,057,795	+		GFF4042	0.14	-0.8
4,057,798	-		GFF4042	0.14	+1.2
4,057,798	-		GFF4042	0.14	+0.8
4,057,799	-		GFF4042	0.14	-0.1
4,057,803	-		GFF4042	0.15	-1.2
4,057,803	-		GFF4042	0.15	+0.2
4,057,841	+		GFF4042	0.20	-1.1
4,057,841	+		GFF4042	0.20	-2.1
4,057,847	+		GFF4042	0.21	-1.0
4,057,855	-		GFF4042	0.22	-0.4
4,057,900	+		GFF4042	0.29	-1.1
4,057,908	-		GFF4042	0.30	-0.2
4,057,921	+		GFF4042	0.32	-0.5
4,057,929	-		GFF4042	0.33	+0.5
4,058,002	+		GFF4042	0.44	-1.8
4,058,002	+		GFF4042	0.44	-0.7
4,058,002	+		GFF4042	0.44	+0.4
4,058,003	+		GFF4042	0.44	-1.4
4,058,011	-		GFF4042	0.45	-0.2
4,058,013	+		GFF4042	0.46	-1.1
4,058,022	+		GFF4042	0.47	-2.1
4,058,022	+		GFF4042	0.47	+0.4
4,058,022	+		GFF4042	0.47	-1.0
4,058,030	-		GFF4042	0.48	-1.6
4,058,088	-		GFF4042	0.57	+0.1
4,058,093	+		GFF4042	0.58	-0.1
4,058,094	-		GFF4042	0.58	-0.7
4,058,095	-		GFF4042	0.58	+1.0
4,058,118	+		GFF4042	0.61	-0.0
4,058,118	+		GFF4042	0.61	-2.1
4,058,126	-		GFF4042	0.62	+0.8
4,058,138	+		GFF4042	0.64	-0.5
4,058,162	-		GFF4042	0.68	-0.4
4,058,172	-		GFF4042	0.69	-1.4
4,058,172	-		GFF4042	0.69	+0.0
4,058,176	-		GFF4042	0.70	-1.4
4,058,195	-		GFF4042	0.73	+0.8
4,058,204	+		GFF4042	0.74	+1.2
4,058,204	+		GFF4042	0.74	-0.9
4,058,217	-		GFF4042	0.76	+1.6
4,058,258	-		GFF4042	0.82	+0.8
4,058,258	-		GFF4042	0.82	-2.4
4,058,298	+		GFF4042	0.88	-1.0
4,058,316	-				-2.1
4,058,317	+				+0.3
4,058,319	+				+0.2
4,058,327	+				-0.8
4,058,335	-				+0.9
4,058,340	+				-1.6
4,058,382	+				-0.1
4,058,393	+				-0.5
4,058,423	-				+0.1
4,058,425	+				-1.6
4,058,443	+		GFF4043	0.13	+0.4
4,058,453	+		GFF4043	0.16	+0.2
4,058,453	+		GFF4043	0.16	+0.1
4,058,453	+		GFF4043	0.16	-0.0
4,058,456	-		GFF4043	0.17	-0.4
4,058,458	+		GFF4043	0.18	+1.8
4,058,458	+		GFF4043	0.18	-0.3
4,058,461	-		GFF4043	0.19	-0.1
4,058,461	-		GFF4043	0.19	-0.4
4,058,463	+		GFF4043	0.20	-0.6
4,058,471	-		GFF4043	0.22	-0.4
4,058,471	-		GFF4043	0.22	-0.9
4,058,474	+		GFF4043	0.23	+0.5
4,058,474	+		GFF4043	0.23	-0.8
4,058,474	+		GFF4043	0.23	+0.8
4,058,474	+		GFF4043	0.23	+1.1
4,058,482	-		GFF4043	0.26	-2.0
4,058,484	+		GFF4043	0.27	-1.4
4,058,541	-		GFF4043	0.46	+0.3
4,058,559	+		GFF4043	0.52	-1.2
4,058,559	+		GFF4043	0.52	+0.6
4,058,560	+		GFF4043	0.52	-1.0
4,058,560	+		GFF4043	0.52	+1.0
4,058,560	+		GFF4043	0.52	-1.6
4,058,560	+		GFF4043	0.52	+0.5
4,058,560	+		GFF4043	0.52	-0.0
4,058,560	+		GFF4043	0.52	+0.6
4,058,560	+		GFF4043	0.52	-2.9
4,058,560	+		GFF4043	0.52	-0.2
4,058,560	+		GFF4043	0.52	-0.7
4,058,560	+		GFF4043	0.52	-0.8
4,058,560	+		GFF4043	0.52	-1.0
4,058,560	+		GFF4043	0.52	-0.6
4,058,560	+		GFF4043	0.52	-1.4
4,058,560	+		GFF4043	0.52	-1.9
4,058,560	+		GFF4043	0.52	-2.6
4,058,560	+		GFF4043	0.52	-0.6
4,058,567	-		GFF4043	0.54	+0.5
4,058,568	-		GFF4043	0.55	-0.5
4,058,568	-		GFF4043	0.55	-0.1
4,058,568	-		GFF4043	0.55	-0.5
4,058,568	-		GFF4043	0.55	+0.6
4,058,568	-		GFF4043	0.55	+0.2
4,058,568	-		GFF4043	0.55	-0.1
4,058,568	-		GFF4043	0.55	-0.5
4,058,568	-		GFF4043	0.55	-1.2
4,058,568	-		GFF4043	0.55	+0.1
4,058,568	-		GFF4043	0.55	-0.3