Strain Fitness in Sphingobium sp. HT1-2 around GFF399

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF398 and GFF399 are separated by 127 nucleotidesGFF399 and GFF400 are separated by 72 nucleotides GFF398 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 385,969 to 387,966 GFF398 GFF399 - Translation initiation factor 3, at 388,094 to 388,627 GFF399 GFF400 - Possible NADH oxidoreductase, at 388,700 to 389,812 GFF400 Position (kb) 388 389Strain fitness (log2 ratio) -2 -1 0 1 2at 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.976 kb on + strandat 387.982 kb on - strandat 387.984 kb on - strandat 388.017 kb on + strandat 388.712 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.748 kb on + strandat 388.756 kb on - strandat 388.756 kb on - strandat 388.756 kb on - strandat 388.779 kb on - strandat 388.784 kb on - strandat 388.785 kb on - strandat 388.802 kb on - strandat 388.820 kb on + strand, within GFF400at 388.860 kb on - strand, within GFF400at 388.921 kb on + strand, within GFF400at 388.921 kb on + strand, within GFF400at 388.929 kb on - strand, within GFF400at 388.956 kb on - strand, within GFF400at 388.970 kb on + strand, within GFF400at 388.970 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.979 kb on - strand, within GFF400at 388.981 kb on + strand, within GFF400at 388.981 kb on + strand, within GFF400at 388.981 kb on + strand, within GFF400at 388.989 kb on - strand, within GFF400at 388.989 kb on - strand, within GFF400at 389.005 kb on - strand, within GFF400at 389.006 kb on + strand, within GFF400at 389.006 kb on + strand, within GFF400at 389.006 kb on + strand, within GFF400at 389.014 kb on - strand, within GFF400at 389.014 kb on - strand, within GFF400at 389.025 kb on + strand, within GFF400at 389.025 kb on + strand, within GFF400at 389.030 kb on - strand, within GFF400at 389.033 kb on + strand, within GFF400at 389.033 kb on - strand, within GFF400at 389.035 kb on + strand, within GFF400at 389.043 kb on - strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.164 kb on - strand, within GFF400at 389.164 kb on - strand, within GFF400at 389.164 kb on - strand, within GFF400at 389.173 kb on + strand, within GFF400at 389.173 kb on + strand, within GFF400at 389.173 kb on + strand, within GFF400at 389.181 kb on - strand, within GFF400at 389.190 kb on + strand, within GFF400at 389.200 kb on + strand, within GFF400at 389.200 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.225 kb on - strand, within GFF400at 389.225 kb on - strand, within GFF400at 389.227 kb on + strand, within GFF400at 389.227 kb on + strand, within GFF400at 389.235 kb on - strand, within GFF400at 389.235 kb on - strand, within GFF400at 389.269 kb on - strand, within GFF400at 389.271 kb on + strand, within GFF400at 389.272 kb on + strand, within GFF400at 389.272 kb on + strand, within GFF400at 389.273 kb on + strand, within GFF400at 389.273 kb on + strand, within GFF400at 389.274 kb on - strand, within GFF400at 389.279 kb on - strand, within GFF400at 389.279 kb on - strand, within GFF400at 389.280 kb on - strand, within GFF400at 389.280 kb on - strand, within GFF400at 389.281 kb on - strand, within GFF400at 389.281 kb on - strand, within GFF400at 389.289 kb on + strand, within GFF400at 389.289 kb on + strand, within GFF400at 389.294 kb on + strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.302 kb on - strand, within GFF400at 389.303 kb on + strand, within GFF400at 389.306 kb on + strand, within GFF400at 389.310 kb on - strand, within GFF400at 389.318 kb on - strand, within GFF400at 389.319 kb on - strand, within GFF400at 389.325 kb on + strand, within GFF400at 389.372 kb on + strand, within GFF400at 389.396 kb on + strand, within GFF400at 389.404 kb on + strand, within GFF400at 389.444 kb on + strand, within GFF400at 389.452 kb on - strand, within GFF400at 389.462 kb on + strand, within GFF400at 389.463 kb on - strand, within GFF400at 389.470 kb on - strand, within GFF400at 389.471 kb on - strand, within GFF400at 389.477 kb on + strand, within GFF400at 389.477 kb on - strand, within GFF400at 389.524 kb on - strand, within GFF400at 389.530 kb on + strand, within GFF400at 389.553 kb on - strand, within GFF400at 389.558 kb on - strand, within GFF400at 389.576 kb on - strand, within GFF400at 389.614 kb on - strand, within GFF400

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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387,976 + -0.6
387,976 + +0.5
387,976 + +1.2
387,976 + -0.4
387,976 + +0.3
387,976 + -1.4
387,982 - -2.3
387,984 - +1.7
388,017 + -0.9
388,712 + -0.5
388,748 + +0.8
388,748 + +2.0
388,748 + +0.5
388,748 + -0.9
388,748 + +0.9
388,756 - +0.2
388,756 - -0.8
388,756 - +0.6
388,779 - -0.3
388,784 - -1.2
388,785 - -0.4
388,802 - -0.2
388,820 + GFF400 0.11 +1.0
388,860 - GFF400 0.14 -2.1
388,921 + GFF400 0.20 -0.3
388,921 + GFF400 0.20 -0.8
388,929 - GFF400 0.21 -0.7
388,956 - GFF400 0.23 +0.4
388,970 + GFF400 0.24 +0.4
388,970 + GFF400 0.24 +0.4
388,971 + GFF400 0.24 -0.7
388,971 + GFF400 0.24 -0.5
388,971 + GFF400 0.24 +0.3
388,971 + GFF400 0.24 -0.6
388,979 - GFF400 0.25 -1.3
388,981 + GFF400 0.25 -1.2
388,981 + GFF400 0.25 +0.5
388,981 + GFF400 0.25 +0.1
388,989 - GFF400 0.26 -1.8
388,989 - GFF400 0.26 -0.0
389,005 - GFF400 0.27 -1.3
389,006 + GFF400 0.27 -1.8
389,006 + GFF400 0.27 -0.4
389,006 + GFF400 0.27 +0.7
389,014 - GFF400 0.28 -0.0
389,014 - GFF400 0.28 +0.5
389,025 + GFF400 0.29 -0.4
389,025 + GFF400 0.29 -0.2
389,030 - GFF400 0.30 -0.7
389,033 + GFF400 0.30 +0.5
389,033 - GFF400 0.30 +0.6
389,035 + GFF400 0.30 +0.3
389,043 - GFF400 0.31 -0.1
389,156 + GFF400 0.41 -0.9
389,156 + GFF400 0.41 -0.6
389,156 + GFF400 0.41 +1.2
389,156 + GFF400 0.41 -0.5
389,156 + GFF400 0.41 -0.6
389,156 + GFF400 0.41 +1.2
389,156 + GFF400 0.41 -0.3
389,156 + GFF400 0.41 -0.3
389,156 + GFF400 0.41 -1.3
389,164 - GFF400 0.42 -0.6
389,164 - GFF400 0.42 +0.8
389,164 - GFF400 0.42 -1.2
389,173 + GFF400 0.42 +1.1
389,173 + GFF400 0.42 +0.3
389,173 + GFF400 0.42 -0.2
389,181 - GFF400 0.43 +0.7
389,190 + GFF400 0.44 -0.7
389,200 + GFF400 0.45 -0.1
389,200 + GFF400 0.45 +0.9
389,217 + GFF400 0.46 +0.3
389,217 + GFF400 0.46 -0.5
389,217 + GFF400 0.46 -1.2
389,217 + GFF400 0.46 -0.8
389,217 + GFF400 0.46 +0.9
389,225 - GFF400 0.47 -1.4
389,225 - GFF400 0.47 +1.0
389,227 + GFF400 0.47 -1.4
389,227 + GFF400 0.47 -1.9
389,235 - GFF400 0.48 +0.3
389,235 - GFF400 0.48 -0.5
389,269 - GFF400 0.51 -1.2
389,271 + GFF400 0.51 +0.7
389,272 + GFF400 0.51 +0.0
389,272 + GFF400 0.51 -0.5
389,273 + GFF400 0.51 -1.3
389,273 + GFF400 0.51 -2.4
389,274 - GFF400 0.52 -2.3
389,279 - GFF400 0.52 -0.1
389,279 - GFF400 0.52 -0.5
389,280 - GFF400 0.52 -2.1
389,280 - GFF400 0.52 +0.3
389,281 - GFF400 0.52 +0.7
389,281 - GFF400 0.52 -0.3
389,289 + GFF400 0.53 -1.2
389,289 + GFF400 0.53 -1.1
389,294 + GFF400 0.53 -0.4
389,297 - GFF400 0.54 -1.4
389,297 - GFF400 0.54 -1.2
389,297 - GFF400 0.54 +1.5
389,297 - GFF400 0.54 -0.1
389,297 - GFF400 0.54 +0.8
389,297 - GFF400 0.54 -2.1
389,297 - GFF400 0.54 -0.6
389,297 - GFF400 0.54 -0.7
389,302 - GFF400 0.54 +0.0
389,303 + GFF400 0.54 +0.7
389,306 + GFF400 0.54 -1.4
389,310 - GFF400 0.55 -0.3
389,318 - GFF400 0.56 -0.6
389,319 - GFF400 0.56 -0.7
389,325 + GFF400 0.56 +0.7
389,372 + GFF400 0.60 +0.9
389,396 + GFF400 0.63 -0.4
389,404 + GFF400 0.63 +0.9
389,444 + GFF400 0.67 +0.4
389,452 - GFF400 0.68 +0.5
389,462 + GFF400 0.68 -1.6
389,463 - GFF400 0.69 -1.3
389,470 - GFF400 0.69 -2.5
389,471 - GFF400 0.69 +0.7
389,477 + GFF400 0.70 -0.2
389,477 - GFF400 0.70 -1.7
389,524 - GFF400 0.74 -1.3
389,530 + GFF400 0.75 -0.3
389,553 - GFF400 0.77 -0.2
389,558 - GFF400 0.77 +0.4
389,576 - GFF400 0.79 -0.5
389,614 - GFF400 0.82 +0.1

Or see this region's nucleotide sequence