Strain Fitness in Sphingobium sp. HT1-2 around GFF397

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF395 and GFF396 are separated by 94 nucleotidesGFF396 and GFF397 overlap by 10 nucleotidesGFF397 and GFF398 are separated by 27 nucleotides GFF395 - hypothetical protein, at 384,679 to 385,266 GFF395 GFF396 - Biopolymer transport protein ExbD/TolR, at 385,361 to 385,798 GFF396 GFF397 - hypothetical protein, at 385,789 to 385,941 GFF397 GFF398 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 385,969 to 387,966 GFF398 Position (kb) 385 386Strain fitness (log2 ratio) -2 -1 0 1at 384.794 kb on - strand, within GFF395at 384.795 kb on - strand, within GFF395at 384.796 kb on - strand, within GFF395at 384.796 kb on - strand, within GFF395at 384.800 kb on + strand, within GFF395at 384.807 kb on - strand, within GFF395at 384.808 kb on - strand, within GFF395at 384.810 kb on + strand, within GFF395at 384.810 kb on + strand, within GFF395at 384.818 kb on - strand, within GFF395at 384.818 kb on - strand, within GFF395at 384.818 kb on - strand, within GFF395at 384.829 kb on - strand, within GFF395at 384.831 kb on + strand, within GFF395at 384.841 kb on + strand, within GFF395at 384.841 kb on + strand, within GFF395at 384.849 kb on - strand, within GFF395at 384.849 kb on - strand, within GFF395at 384.849 kb on - strand, within GFF395at 384.883 kb on - strand, within GFF395at 384.901 kb on + strand, within GFF395at 384.904 kb on - strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.947 kb on + strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.955 kb on - strand, within GFF395at 384.978 kb on + strand, within GFF395at 384.978 kb on + strand, within GFF395at 384.978 kb on + strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 384.986 kb on - strand, within GFF395at 385.008 kb on - strand, within GFF395at 385.018 kb on + strand, within GFF395at 385.100 kb on + strand, within GFF395at 385.108 kb on - strand, within GFF395at 385.153 kb on - strand, within GFF395at 385.159 kb on + strand, within GFF395at 385.160 kb on + strand, within GFF395at 385.168 kb on - strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.192 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.199 kb on + strand, within GFF395at 385.200 kb on + strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.200 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.207 kb on - strand, within GFF395at 385.220 kb on + strandat 385.220 kb on + strandat 385.220 kb on + strandat 385.228 kb on - strandat 385.228 kb on - strandat 385.235 kb on + strandat 385.240 kb on + strandat 385.249 kb on - strandat 385.251 kb on + strandat 385.261 kb on + strandat 385.262 kb on + strandat 385.269 kb on - strandat 385.269 kb on - strandat 385.281 kb on + strandat 385.299 kb on - strandat 385.299 kb on - strandat 385.400 kb on - strandat 385.400 kb on - strandat 385.406 kb on - strand, within GFF396at 385.408 kb on + strand, within GFF396at 385.432 kb on + strand, within GFF396at 385.440 kb on - strand, within GFF396at 385.440 kb on - strand, within GFF396at 385.444 kb on + strand, within GFF396at 385.497 kb on + strand, within GFF396at 385.505 kb on - strand, within GFF396at 385.505 kb on - strand, within GFF396at 385.515 kb on - strand, within GFF396at 385.531 kb on + strand, within GFF396at 385.531 kb on + strand, within GFF396at 385.534 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.539 kb on - strand, within GFF396at 385.548 kb on + strand, within GFF396at 385.557 kb on + strand, within GFF396at 385.565 kb on + strand, within GFF396at 385.570 kb on + strand, within GFF396at 385.573 kb on - strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.611 kb on + strand, within GFF396at 385.614 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.619 kb on - strand, within GFF396at 385.621 kb on + strand, within GFF396at 385.621 kb on + strand, within GFF396at 385.629 kb on - strand, within GFF396at 385.633 kb on - strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.648 kb on + strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.656 kb on - strand, within GFF396at 385.660 kb on + strand, within GFF396at 385.662 kb on + strand, within GFF396at 385.667 kb on + strand, within GFF396at 385.672 kb on + strand, within GFF396at 385.692 kb on + strand, within GFF396at 385.700 kb on - strand, within GFF396at 385.713 kb on - strand, within GFF396at 385.724 kb on - strand, within GFF396at 385.734 kb on + strand, within GFF396at 385.760 kb on + strandat 385.760 kb on + strandat 385.768 kb on - strandat 385.768 kb on - strandat 385.776 kb on - strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.787 kb on + strandat 385.795 kb on + strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.795 kb on - strandat 385.802 kb on - strandat 385.845 kb on + strand, within GFF397at 385.851 kb on + strand, within GFF397at 385.851 kb on + strand, within GFF397

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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384,794 - GFF395 0.20 +0.2
384,795 - GFF395 0.20 +1.2
384,796 - GFF395 0.20 -0.6
384,796 - GFF395 0.20 +0.4
384,800 + GFF395 0.21 -2.0
384,807 - GFF395 0.22 -0.0
384,808 - GFF395 0.22 -0.3
384,810 + GFF395 0.22 -0.1
384,810 + GFF395 0.22 -1.4
384,818 - GFF395 0.24 +0.0
384,818 - GFF395 0.24 -0.8
384,818 - GFF395 0.24 -2.4
384,829 - GFF395 0.26 -1.1
384,831 + GFF395 0.26 -0.7
384,841 + GFF395 0.28 -1.9
384,841 + GFF395 0.28 +0.2
384,849 - GFF395 0.29 -1.4
384,849 - GFF395 0.29 -0.8
384,849 - GFF395 0.29 +0.2
384,883 - GFF395 0.35 +0.5
384,901 + GFF395 0.38 +0.0
384,904 - GFF395 0.38 +0.5
384,947 + GFF395 0.46 -1.6
384,947 + GFF395 0.46 +0.1
384,947 + GFF395 0.46 -0.0
384,947 + GFF395 0.46 +0.5
384,947 + GFF395 0.46 +0.4
384,947 + GFF395 0.46 -1.6
384,947 + GFF395 0.46 -1.3
384,947 + GFF395 0.46 -1.7
384,955 - GFF395 0.47 +0.0
384,955 - GFF395 0.47 +0.2
384,955 - GFF395 0.47 +0.3
384,955 - GFF395 0.47 +0.4
384,955 - GFF395 0.47 -1.0
384,955 - GFF395 0.47 -0.6
384,955 - GFF395 0.47 -0.5
384,955 - GFF395 0.47 -1.1
384,955 - GFF395 0.47 -1.0
384,978 + GFF395 0.51 +0.3
384,978 + GFF395 0.51 -0.8
384,978 + GFF395 0.51 -0.1
384,986 - GFF395 0.52 -1.7
384,986 - GFF395 0.52 -0.8
384,986 - GFF395 0.52 -0.6
384,986 - GFF395 0.52 +0.3
385,008 - GFF395 0.56 -0.1
385,018 + GFF395 0.58 +0.2
385,100 + GFF395 0.72 +0.9
385,108 - GFF395 0.73 -1.2
385,153 - GFF395 0.81 +0.5
385,159 + GFF395 0.82 +0.5
385,160 + GFF395 0.82 -0.0
385,168 - GFF395 0.83 +0.6
385,192 + GFF395 0.87 -1.3
385,192 + GFF395 0.87 -0.8
385,192 + GFF395 0.87 -0.3
385,192 + GFF395 0.87 -1.8
385,199 + GFF395 0.88 -0.2
385,199 + GFF395 0.88 -0.5
385,199 + GFF395 0.88 -2.6
385,199 + GFF395 0.88 -0.1
385,199 + GFF395 0.88 -1.1
385,199 + GFF395 0.88 -0.2
385,199 + GFF395 0.88 +1.0
385,200 + GFF395 0.89 -0.6
385,200 - GFF395 0.89 -0.9
385,200 - GFF395 0.89 +0.9
385,200 - GFF395 0.89 +0.9
385,207 - GFF395 0.90 +1.0
385,207 - GFF395 0.90 +0.4
385,207 - GFF395 0.90 +0.0
385,207 - GFF395 0.90 -0.3
385,207 - GFF395 0.90 +1.0
385,220 + +0.4
385,220 + -0.1
385,220 + +0.6
385,228 - -0.1
385,228 - +0.0
385,235 + -0.3
385,240 + +0.1
385,249 - -0.6
385,251 + +0.8
385,261 + +0.3
385,262 + -1.2
385,269 - -1.3
385,269 - -2.4
385,281 + +0.4
385,299 - -1.2
385,299 - -0.5
385,400 - +0.4
385,400 - +0.7
385,406 - GFF396 0.10 +0.0
385,408 + GFF396 0.11 +0.6
385,432 + GFF396 0.16 -1.0
385,440 - GFF396 0.18 -1.0
385,440 - GFF396 0.18 +1.5
385,444 + GFF396 0.19 +0.8
385,497 + GFF396 0.31 +0.0
385,505 - GFF396 0.33 -2.5
385,505 - GFF396 0.33 +0.3
385,515 - GFF396 0.35 -1.8
385,531 + GFF396 0.39 +0.4
385,531 + GFF396 0.39 -2.2
385,534 - GFF396 0.39 -1.5
385,539 - GFF396 0.41 -1.4
385,539 - GFF396 0.41 +0.1
385,539 - GFF396 0.41 -1.0
385,539 - GFF396 0.41 +0.0
385,548 + GFF396 0.43 -0.5
385,557 + GFF396 0.45 -0.2
385,565 + GFF396 0.47 -1.8
385,570 + GFF396 0.48 +0.2
385,573 - GFF396 0.48 +0.9
385,611 + GFF396 0.57 +0.4
385,611 + GFF396 0.57 -1.6
385,611 + GFF396 0.57 -0.2
385,611 + GFF396 0.57 -0.2
385,611 + GFF396 0.57 -0.2
385,611 + GFF396 0.57 -0.1
385,611 + GFF396 0.57 +1.1
385,611 + GFF396 0.57 +0.3
385,614 - GFF396 0.58 +0.1
385,619 - GFF396 0.59 -1.0
385,619 - GFF396 0.59 +0.1
385,619 - GFF396 0.59 -1.2
385,619 - GFF396 0.59 -0.8
385,619 - GFF396 0.59 -0.3
385,619 - GFF396 0.59 +0.1
385,619 - GFF396 0.59 -1.0
385,619 - GFF396 0.59 -0.6
385,619 - GFF396 0.59 -1.4
385,619 - GFF396 0.59 +0.2
385,621 + GFF396 0.59 +0.6
385,621 + GFF396 0.59 -0.8
385,629 - GFF396 0.61 -1.9
385,633 - GFF396 0.62 +0.5
385,648 + GFF396 0.66 +1.3
385,648 + GFF396 0.66 +0.8
385,648 + GFF396 0.66 +0.1
385,648 + GFF396 0.66 +0.3
385,648 + GFF396 0.66 -1.1
385,648 + GFF396 0.66 -0.4
385,648 + GFF396 0.66 -0.8
385,648 + GFF396 0.66 -2.4
385,656 - GFF396 0.67 -0.1
385,656 - GFF396 0.67 -0.8
385,656 - GFF396 0.67 -0.2
385,656 - GFF396 0.67 -1.5
385,656 - GFF396 0.67 -1.2
385,656 - GFF396 0.67 -1.3
385,660 + GFF396 0.68 +0.8
385,662 + GFF396 0.69 -1.6
385,667 + GFF396 0.70 +0.0
385,672 + GFF396 0.71 -0.7
385,692 + GFF396 0.76 -2.6
385,700 - GFF396 0.77 +0.5
385,713 - GFF396 0.80 +0.0
385,724 - GFF396 0.83 -0.3
385,734 + GFF396 0.85 -1.0
385,760 + +0.1
385,760 + -1.2
385,768 - -0.5
385,768 - -1.2
385,776 - -0.9
385,787 + -0.7
385,787 + -0.3
385,787 + -0.9
385,787 + -1.2
385,795 + +0.2
385,795 - -2.0
385,795 - -1.5
385,795 - -0.2
385,795 - +0.2
385,795 - -0.1
385,802 - -0.3
385,845 + GFF397 0.37 +0.9
385,851 + GFF397 0.41 +0.4
385,851 + GFF397 0.41 +0.0

Or see this region's nucleotide sequence