Strain Fitness in Sphingobium sp. HT1-2 around GFF3935

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,973,407	+				+0.4
3,973,432	-				-1.4
3,973,438	-				-0.3
3,973,462	+				-0.0
3,973,462	+				-0.0
3,973,477	-				+0.3
3,973,481	+				-0.4
3,973,523	-		GFF3934	0.14	-1.9
3,973,523	-		GFF3934	0.14	+0.5
3,973,544	-		GFF3934	0.17	-0.7
3,973,549	-		GFF3934	0.17	-1.3
3,973,551	-		GFF3934	0.17	+0.7
3,973,569	-		GFF3934	0.19	-0.4
3,973,605	+		GFF3934	0.23	-1.2
3,973,623	-		GFF3934	0.25	-0.1
3,973,658	+		GFF3934	0.29	-1.3
3,973,658	+		GFF3934	0.29	-0.2
3,973,680	-		GFF3934	0.31	-1.9
3,973,692	-		GFF3934	0.32	-0.1
3,973,697	+		GFF3934	0.33	+0.0
3,973,699	-		GFF3934	0.33	-0.0
3,973,705	-		GFF3934	0.34	-0.5
3,973,705	-		GFF3934	0.34	-0.4
3,973,705	-		GFF3934	0.34	-1.4
3,973,705	-		GFF3934	0.34	+0.2
3,973,736	+		GFF3934	0.37	-1.1
3,973,738	+		GFF3934	0.37	-1.5
3,973,738	+		GFF3934	0.37	-0.0
3,973,746	+		GFF3934	0.38	-0.1
3,973,746	+		GFF3934	0.38	+0.6
3,973,746	-		GFF3934	0.38	+0.9
3,973,746	-		GFF3934	0.38	-0.3
3,973,746	-		GFF3934	0.38	-0.4
3,973,773	+		GFF3934	0.41	+0.5
3,973,780	+		GFF3934	0.41	-0.9
3,973,788	-		GFF3934	0.42	-0.8
3,973,789	+		GFF3934	0.42	-2.0
3,973,826	-		GFF3934	0.46	-0.1
3,973,826	-		GFF3934	0.46	-0.2
3,973,854	-		GFF3934	0.49	-1.0
3,973,877	+		GFF3934	0.52	+0.3
3,973,909	+		GFF3934	0.55	-0.3
3,973,924	+		GFF3934	0.57	+0.3
3,973,924	+		GFF3934	0.57	-1.6
3,973,924	+		GFF3934	0.57	-0.9
3,973,932	-		GFF3934	0.57	-1.1
3,973,932	-		GFF3934	0.57	-0.7
3,973,932	-		GFF3934	0.57	-1.6
3,973,932	-		GFF3934	0.57	-1.2
3,973,955	-		GFF3934	0.60	+0.3
3,973,993	+		GFF3934	0.64	-0.2
3,973,999	+		GFF3934	0.65	-0.4
3,974,010	+		GFF3934	0.66	-1.2
3,974,010	+		GFF3934	0.66	+0.3
3,974,018	-		GFF3934	0.67	-1.2
3,974,018	-		GFF3934	0.67	+0.5
3,974,018	-		GFF3934	0.67	-1.9
3,974,018	-		GFF3934	0.67	-1.0
3,974,039	+		GFF3934	0.69	-0.9
3,974,051	+		GFF3934	0.70	+0.6
3,974,056	+		GFF3934	0.71	-2.0
3,974,056	+		GFF3934	0.71	-0.9
3,974,056	+		GFF3934	0.71	+0.2
3,974,056	+		GFF3934	0.71	-1.3
3,974,059	-		GFF3934	0.71	-0.7
3,974,059	-		GFF3934	0.71	-1.0
3,974,064	-		GFF3934	0.71	-1.3
3,974,064	-		GFF3934	0.71	-0.5
3,974,064	-		GFF3934	0.71	-0.4
3,974,064	-		GFF3934	0.71	-0.5
3,974,064	-		GFF3934	0.71	-0.9
3,974,101	+		GFF3934	0.75	-1.0
3,974,109	-		GFF3934	0.76	-0.5
3,974,131	-		GFF3934	0.78	+0.0
3,974,140	-		GFF3934	0.79	-0.2
3,974,163	+		GFF3934	0.82	-0.7
3,974,169	-		GFF3934	0.82	-0.2
3,974,171	-		GFF3934	0.83	-0.8
3,974,171	-		GFF3934	0.83	-0.6
3,974,172	-		GFF3934	0.83	+0.1
3,974,207	+		GFF3934	0.86	+0.1
3,974,217	+		GFF3934	0.88	-2.2
3,974,217	+		GFF3934	0.88	+0.2
3,974,217	+		GFF3934	0.88	-0.9
3,974,217	+		GFF3934	0.88	-1.3
3,974,225	-		GFF3934	0.88	+0.5
3,974,225	-		GFF3934	0.88	+0.5
3,974,239	+		GFF3934	0.90	-2.0
3,974,239	+		GFF3934	0.90	+1.0
3,974,258	-				+0.2
3,974,277	+				-1.4
3,974,277	+				-0.4
3,974,277	+				+0.0
3,974,277	+				-0.7
3,974,285	-				-0.4
3,974,285	-				-1.9
3,974,285	-				-1.8
3,974,285	-				+0.8
3,974,285	-				+0.6
3,974,285	-				-1.1
3,974,287	+				-1.7
3,974,306	+				-0.4
3,974,306	+				-1.3
3,974,309	+				-1.5
3,974,313	+				+1.2
3,974,314	-				-0.4
3,974,314	-				-1.9
3,974,314	-				-3.0
3,974,323	+				+0.3
3,974,323	+				+0.5
3,974,331	-				+0.2
3,974,331	-				+1.4
3,974,351	-				+1.0
3,974,354	+				+0.3
3,974,362	-				-0.6
3,974,380	-				-0.6
3,974,416	-				-1.2
3,974,421	-				-0.4
3,974,429	-				-1.2
3,974,954	+				-1.4
3,974,954	+				-1.5
3,974,959	+				-0.4
3,974,959	+				-1.7
3,974,959	+				+0.5
3,974,967	-				-0.6
3,974,967	-				-0.5
3,974,967	-				+0.3
3,974,979	+				-1.9
3,974,989	+				-1.8
3,975,008	-				-1.1
3,975,018	+				+0.9
3,975,035	+				-0.6
3,975,036	-				-1.0
3,975,036	-				-0.5
3,975,107	-		GFF3936	0.17	-1.2
3,975,110	+		GFF3936	0.17	+0.2
3,975,118	-		GFF3936	0.18	+0.2
3,975,118	-		GFF3936	0.18	-0.3
3,975,120	-		GFF3936	0.18	-0.5
3,975,163	-		GFF3936	0.22	-0.5
3,975,163	-		GFF3936	0.22	+1.3
3,975,173	-		GFF3936	0.23	+0.4
3,975,181	-		GFF3936	0.24	+0.2
3,975,198	-		GFF3936	0.26	+0.6
3,975,198	-		GFF3936	0.26	+0.6
3,975,206	+		GFF3936	0.27	-1.1
3,975,213	-		GFF3936	0.27	-2.2
3,975,214	-		GFF3936	0.28	-0.1
3,975,214	-		GFF3936	0.28	+0.3
3,975,216	+		GFF3936	0.28	-0.5
3,975,216	+		GFF3936	0.28	-1.9
3,975,216	+		GFF3936	0.28	-1.7
3,975,224	-		GFF3936	0.29	-0.6
3,975,224	-		GFF3936	0.29	-0.6
3,975,224	-		GFF3936	0.29	-0.2
3,975,224	-		GFF3936	0.29	-0.2
3,975,224	-		GFF3936	0.29	-1.0
3,975,224	-		GFF3936	0.29	-1.1
3,975,224	-		GFF3936	0.29	+0.9
3,975,224	-		GFF3936	0.29	+0.3
3,975,224	-		GFF3936	0.29	-0.3
3,975,224	-		GFF3936	0.29	+0.2
3,975,224	-		GFF3936	0.29	-0.1
3,975,224	-		GFF3936	0.29	+0.3
3,975,224	-		GFF3936	0.29	+0.1
3,975,228	+		GFF3936	0.29	+0.5
3,975,241	-		GFF3936	0.30	+0.2
3,975,248	+		GFF3936	0.31	-1.5
3,975,275	+		GFF3936	0.34	+0.7
3,975,291	-		GFF3936	0.35	-1.2
3,975,299	+		GFF3936	0.36	-0.9
3,975,307	-		GFF3936	0.37	+0.8
3,975,312	-		GFF3936	0.37	+0.8
3,975,330	+		GFF3936	0.39	-2.3
3,975,349	-		GFF3936	0.41	+0.2
3,975,370	+		GFF3936	0.43	+0.5
3,975,378	-		GFF3936	0.44	-0.7
3,975,385	+		GFF3936	0.45	-1.3
3,975,385	+		GFF3936	0.45	+0.4
3,975,406	-		GFF3936	0.47	+0.8
3,975,408	+		GFF3936	0.47	+0.1
3,975,411	-		GFF3936	0.47	-0.6
3,975,417	+		GFF3936	0.48	-1.6
3,975,417	-		GFF3936	0.48	-1.0
3,975,431	+		GFF3936	0.49	-1.2
3,975,449	-		GFF3936	0.51	+0.0
3,975,536	-		GFF3936	0.60	-0.6
3,975,551	-		GFF3936	0.61	-0.3
3,975,583	+		GFF3936	0.64	-2.2
3,975,591	-		GFF3936	0.65	+0.8
3,975,591	-		GFF3936	0.65	+0.5
3,975,591	-		GFF3936	0.65	-0.6
3,975,623	+		GFF3936	0.68	-0.2
3,975,636	-		GFF3936	0.70	+1.5
3,975,646	-		GFF3936	0.71	+0.7
3,975,684	-		GFF3936	0.74	-0.5
3,975,706	+		GFF3936	0.77	-0.3
3,975,754	-		GFF3936	0.81	-2.2
3,975,758	+		GFF3936	0.82	+0.4
3,975,764	+		GFF3936	0.82	-0.2
3,975,796	-		GFF3936	0.86	-2.1
3,975,801	-		GFF3936	0.86	-0.9
3,975,870	+				+0.4
3,975,906	+				-1.4
3,975,908	-				-1.1