Strain Fitness in Sphingobium sp. HT1-2 around GFF3925

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,963,662	-		GFF3924	0.35	-0.3
3,963,664	-		GFF3924	0.35	-0.6
3,963,697	+		GFF3924	0.38	-0.3
3,963,707	-		GFF3924	0.38	+0.3
3,963,736	-		GFF3924	0.40	-0.3
3,963,745	+		GFF3924	0.41	-0.4
3,963,752	+		GFF3924	0.41	-0.2
3,963,753	-		GFF3924	0.41	+0.9
3,963,753	-		GFF3924	0.41	-1.1
3,963,753	-		GFF3924	0.41	-0.6
3,963,753	-		GFF3924	0.41	-1.9
3,963,760	-		GFF3924	0.42	-1.0
3,963,778	-		GFF3924	0.43	-0.6
3,963,790	+		GFF3924	0.44	+0.1
3,963,816	+		GFF3924	0.46	-0.7
3,963,824	+		GFF3924	0.46	+0.3
3,963,824	-		GFF3924	0.46	-2.2
3,963,824	-		GFF3924	0.46	-2.3
3,963,869	+		GFF3924	0.49	-3.2
3,963,877	-		GFF3924	0.50	+1.3
3,963,900	+		GFF3924	0.51	+0.1
3,963,900	+		GFF3924	0.51	-0.5
3,963,916	-		GFF3924	0.53	-0.1
3,963,921	+		GFF3924	0.53	-0.1
3,963,921	+		GFF3924	0.53	+0.3
3,963,929	-		GFF3924	0.53	+0.6
3,963,938	+		GFF3924	0.54	-1.0
3,963,946	-		GFF3924	0.55	-0.0
3,964,013	-		GFF3924	0.59	-0.0
3,964,025	-		GFF3924	0.60	-0.5
3,964,025	-		GFF3924	0.60	+0.5
3,964,041	+		GFF3924	0.61	+0.7
3,964,042	-		GFF3924	0.61	+0.4
3,964,050	+		GFF3924	0.62	+0.3
3,964,058	-		GFF3924	0.62	-2.8
3,964,095	-		GFF3924	0.65	-0.1
3,964,099	+		GFF3924	0.65	+0.6
3,964,099	+		GFF3924	0.65	-0.1
3,964,107	-		GFF3924	0.66	-1.1
3,964,107	-		GFF3924	0.66	-0.2
3,964,109	+		GFF3924	0.66	+0.2
3,964,120	+		GFF3924	0.66	+1.4
3,964,160	+		GFF3924	0.69	+0.8
3,964,170	+		GFF3924	0.70	-0.4
3,964,175	+		GFF3924	0.70	-0.3
3,964,175	+		GFF3924	0.70	-0.6
3,964,176	+		GFF3924	0.70	-0.9
3,964,176	+		GFF3924	0.70	-0.0
3,964,176	+		GFF3924	0.70	-0.3
3,964,183	-		GFF3924	0.71	+1.4
3,964,183	-		GFF3924	0.71	-0.9
3,964,185	+		GFF3924	0.71	-2.2
3,964,186	+		GFF3924	0.71	+0.8
3,964,224	+		GFF3924	0.74	-1.1
3,964,224	+		GFF3924	0.74	-1.6
3,964,224	+		GFF3924	0.74	+0.9
3,964,225	+		GFF3924	0.74	-1.5
3,964,225	+		GFF3924	0.74	-0.3
3,964,226	-		GFF3924	0.74	-1.3
3,964,234	-		GFF3924	0.74	+1.5
3,964,239	+		GFF3924	0.75	+1.1
3,964,247	-		GFF3924	0.75	-1.6
3,964,254	+		GFF3924	0.76	-1.1
3,964,254	-		GFF3924	0.76	-0.0
3,964,277	-		GFF3924	0.77	+0.5
3,964,318	-		GFF3924	0.80	+0.4
3,964,318	-		GFF3924	0.80	-1.3
3,964,333	+		GFF3924	0.81	-0.9
3,964,361	+		GFF3924	0.83	+1.1
3,964,361	+		GFF3924	0.83	-0.5
3,964,361	+		GFF3924	0.83	-0.1
3,964,390	-		GFF3924	0.85	-0.3
3,964,390	-		GFF3924	0.85	-0.2
3,964,390	-		GFF3924	0.85	-0.6
3,964,390	-		GFF3924	0.85	-2.3
3,964,390	-		GFF3924	0.85	+0.9
3,964,412	+		GFF3924	0.86	-0.0
3,964,424	+		GFF3924	0.87	+0.2
3,964,424	+		GFF3924	0.87	-1.4
3,964,424	+		GFF3924	0.87	-0.1
3,964,424	+		GFF3924	0.87	-0.0
3,964,424	+		GFF3924	0.87	-0.7
3,964,424	+		GFF3924	0.87	-1.5
3,964,424	+		GFF3924	0.87	+0.4
3,964,427	-		GFF3924	0.87	-1.3
3,964,427	-		GFF3924	0.87	-2.3
3,964,432	-		GFF3924	0.88	+0.9
3,964,432	-		GFF3924	0.88	+0.2
3,964,432	-		GFF3924	0.88	-0.9
3,964,442	-		GFF3924	0.88	-0.4
3,964,444	+		GFF3924	0.89	-1.0
3,964,449	+		GFF3924	0.89	+0.2
3,964,465	+				+0.9
3,964,473	-				+0.2
3,964,475	+				-1.8
3,964,499	-				-0.7
3,964,528	-				-0.1
3,964,528	-				+1.6
3,964,535	-				-0.4
3,964,548	+				-0.6
3,964,561	-				-0.1
3,964,593	+				+0.6
3,964,593	+				+0.4
3,964,598	+				-0.3
3,964,602	-				+0.7
3,964,606	+				+1.0
3,964,614	-				+0.9
3,964,626	+				-0.3
3,964,629	-				+0.3
3,964,639	-				-0.2
3,964,684	+				+0.1
3,964,684	+				-1.2
3,964,698	-				-0.6
3,964,703	-				-2.5
3,964,707	+				-0.0
3,964,707	+				+0.3
3,964,715	-				-1.7
3,964,719	+				+1.1
3,964,719	+				-0.0
3,964,727	-				-0.8
3,964,727	-				-1.1
3,964,727	-				-1.5
3,964,778	+		GFF3925	0.12	-0.1
3,964,790	+		GFF3925	0.13	-1.3
3,964,793	-		GFF3925	0.13	-1.9
3,964,805	+		GFF3925	0.14	-0.2
3,964,805	+		GFF3925	0.14	+0.5
3,964,813	-		GFF3925	0.15	+0.1
3,964,813	-		GFF3925	0.15	-2.2
3,964,821	+		GFF3925	0.16	-1.3
3,964,823	-		GFF3925	0.16	-0.4
3,964,829	-		GFF3925	0.16	-1.1
3,964,858	-		GFF3925	0.19	-1.2
3,964,870	+		GFF3925	0.20	-0.3
3,964,871	-		GFF3925	0.20	-0.3
3,964,871	-		GFF3925	0.20	+0.6
3,964,874	+		GFF3925	0.20	+0.1
3,964,880	+		GFF3925	0.21	-0.1
3,964,914	+		GFF3925	0.23	+0.1
3,964,920	+		GFF3925	0.24	-1.7
3,964,940	+		GFF3925	0.26	-1.3
3,964,940	+		GFF3925	0.26	-1.6
3,964,940	+		GFF3925	0.26	-2.1
3,964,940	+		GFF3925	0.26	+0.4
3,964,948	-		GFF3925	0.26	+0.3
3,964,948	-		GFF3925	0.26	+0.3
3,964,971	+		GFF3925	0.28	-0.2
3,964,978	+		GFF3925	0.29	-1.0
3,964,979	-		GFF3925	0.29	-1.3
3,964,985	+		GFF3925	0.29	+0.1
3,964,993	-		GFF3925	0.30	+0.9
3,965,002	-		GFF3925	0.31	-1.3
3,965,005	-		GFF3925	0.31	+0.1
3,965,017	-		GFF3925	0.32	-0.1
3,965,020	+		GFF3925	0.32	+1.2
3,965,051	-		GFF3925	0.35	-0.7
3,965,056	-		GFF3925	0.35	+1.2
3,965,062	-		GFF3925	0.36	-0.6
3,965,084	+		GFF3925	0.38	-0.4
3,965,084	+		GFF3925	0.38	-1.0
3,965,087	-		GFF3925	0.38	+0.3
3,965,102	+		GFF3925	0.39	-1.4
3,965,109	+		GFF3925	0.40	-0.1
3,965,117	-		GFF3925	0.41	+0.6
3,965,117	-		GFF3925	0.41	+0.5
3,965,117	-		GFF3925	0.41	+0.3
3,965,124	+		GFF3925	0.41	+0.2
3,965,124	+		GFF3925	0.41	+0.1
3,965,124	+		GFF3925	0.41	-1.9
3,965,124	+		GFF3925	0.41	-0.3
3,965,132	-		GFF3925	0.42	-1.1
3,965,132	-		GFF3925	0.42	-0.3
3,965,132	-		GFF3925	0.42	-0.3
3,965,132	-		GFF3925	0.42	-0.5
3,965,132	-		GFF3925	0.42	+1.1
3,965,134	+		GFF3925	0.42	-1.2
3,965,142	-		GFF3925	0.43	+0.3
3,965,142	-		GFF3925	0.43	+0.1
3,965,174	+		GFF3925	0.45	-1.1
3,965,216	-		GFF3925	0.49	-0.6
3,965,257	-		GFF3925	0.52	+0.5
3,965,269	+		GFF3925	0.53	+0.4
3,965,300	-		GFF3925	0.56	-1.5
3,965,301	-		GFF3925	0.56	-2.2
3,965,308	-		GFF3925	0.57	-1.1
3,965,333	+		GFF3925	0.59	-1.6
3,965,333	+		GFF3925	0.59	-0.1
3,965,333	+		GFF3925	0.59	-0.1
3,965,333	+		GFF3925	0.59	-2.5
3,965,333	+		GFF3925	0.59	-1.5
3,965,333	+		GFF3925	0.59	-1.2
3,965,333	+		GFF3925	0.59	-1.6
3,965,337	-		GFF3925	0.59	+0.8
3,965,338	+		GFF3925	0.59	-0.0
3,965,341	-		GFF3925	0.59	-0.1
3,965,341	-		GFF3925	0.59	-0.9
3,965,341	-		GFF3925	0.59	-2.0
3,965,341	-		GFF3925	0.59	-0.9
3,965,346	-		GFF3925	0.60	-1.2
3,965,346	-		GFF3925	0.60	-1.9
3,965,371	-		GFF3925	0.62	-0.6
3,965,385	+		GFF3925	0.63	-1.6
3,965,392	+		GFF3925	0.64	-0.8
3,965,392	+		GFF3925	0.64	-0.7
3,965,392	+		GFF3925	0.64	-0.9
3,965,392	+		GFF3925	0.64	-1.0
3,965,393	-		GFF3925	0.64	+0.7
3,965,393	-		GFF3925	0.64	-1.1
3,965,395	-		GFF3925	0.64	+0.6
3,965,400	-		GFF3925	0.64	-1.5
3,965,400	-		GFF3925	0.64	+0.6
3,965,402	+		GFF3925	0.65	+0.3
3,965,402	+		GFF3925	0.65	-0.1
3,965,402	+		GFF3925	0.65	-0.7
3,965,410	-		GFF3925	0.65	-0.3
3,965,410	-		GFF3925	0.65	+1.7
3,965,410	-		GFF3925	0.65	-2.7
3,965,410	-		GFF3925	0.65	-0.4
3,965,421	-		GFF3925	0.66	+0.7
3,965,424	+		GFF3925	0.66	-1.6
3,965,424	+		GFF3925	0.66	-1.9
3,965,425	+		GFF3925	0.66	-2.8
3,965,430	+		GFF3925	0.67	-0.2
3,965,433	-		GFF3925	0.67	-1.7
3,965,433	-		GFF3925	0.67	-0.1
3,965,433	-		GFF3925	0.67	-0.4
3,965,433	-		GFF3925	0.67	-2.0
3,965,433	-		GFF3925	0.67	+0.3
3,965,435	+		GFF3925	0.67	-0.3
3,965,435	+		GFF3925	0.67	-0.5
3,965,435	+		GFF3925	0.67	-0.5
3,965,438	-		GFF3925	0.68	-1.1
3,965,443	-		GFF3925	0.68	-0.5
3,965,443	-		GFF3925	0.68	-0.4
3,965,443	-		GFF3925	0.68	+0.1
3,965,457	-		GFF3925	0.69	-0.4
3,965,497	+		GFF3925	0.73	-1.7
3,965,520	+		GFF3925	0.74	+0.9
3,965,526	-		GFF3925	0.75	+0.0
3,965,534	-		GFF3925	0.76	-0.1
3,965,566	+		GFF3925	0.78	+1.9
3,965,566	-		GFF3925	0.78	-0.2
3,965,566	-		GFF3925	0.78	-0.5
3,965,574	-		GFF3925	0.79	-2.4
3,965,585	-		GFF3925	0.80	-1.5
3,965,597	+		GFF3925	0.81	-1.8
3,965,614	-		GFF3925	0.82	-0.8
3,965,619	+		GFF3925	0.83	-0.5
3,965,619	+		GFF3925	0.83	-0.1
3,965,619	+		GFF3925	0.83	+0.3
3,965,619	+		GFF3925	0.83	-0.3
3,965,619	+		GFF3925	0.83	+0.8
3,965,619	+		GFF3925	0.83	+0.6
3,965,624	+		GFF3925	0.83	-0.0
3,965,627	-		GFF3925	0.84	-0.1
3,965,627	-		GFF3925	0.84	-0.4
3,965,627	-		GFF3925	0.84	-0.1
3,965,627	-		GFF3925	0.84	-0.7
3,965,627	-		GFF3925	0.84	-0.5
3,965,629	+		GFF3925	0.84	-0.6
3,965,633	+		GFF3925	0.84	+0.7
3,965,633	+		GFF3925	0.84	-1.8
3,965,638	+		GFF3925	0.84	-0.4
3,965,638	+		GFF3925	0.84	+1.5
3,965,641	-		GFF3925	0.85	+0.1
3,965,641	-		GFF3925	0.85	-1.1
3,965,641	-		GFF3925	0.85	-1.0
3,965,643	+		GFF3925	0.85	+0.6
3,965,646	-		GFF3925	0.85	-0.2
3,965,646	-		GFF3925	0.85	-1.0
3,965,646	-		GFF3925	0.85	+0.6
3,965,651	-		GFF3925	0.86	-2.0
3,965,664	-		GFF3925	0.87	+0.9
3,965,665	+		GFF3925	0.87	+0.4
3,965,665	+		GFF3925	0.87	-1.0
3,965,665	+		GFF3925	0.87	+0.4
3,965,673	-		GFF3925	0.87	-0.9
3,965,673	-		GFF3925	0.87	-0.6
3,965,673	-		GFF3925	0.87	-1.0
3,965,673	-		GFF3925	0.87	+1.3
3,965,678	-		GFF3925	0.88	+0.9
3,965,679	+		GFF3925	0.88	-0.4
3,965,683	-		GFF3925	0.88	+0.5
3,965,684	+		GFF3925	0.88	-0.2
3,965,684	+		GFF3925	0.88	-1.9
3,965,687	-		GFF3925	0.89	+0.6
3,965,687	-		GFF3925	0.89	-1.7
3,965,692	-		GFF3925	0.89	-0.1
3,965,692	-		GFF3925	0.89	-0.2
3,965,692	-		GFF3925	0.89	+0.9
3,965,692	-		GFF3925	0.89	+0.7
3,965,692	-		GFF3925	0.89	-0.9
3,965,711	-				+0.2
3,965,717	+				-1.1
3,965,717	+				-0.3
3,965,725	-				-0.5
3,965,755	+				-0.1
3,965,755	+				-0.5
3,965,763	-				-0.3
3,965,772	+				-1.8
3,965,772	+				+1.0
3,965,780	-				+1.4
3,965,817	+				-1.4
3,965,817	+				-1.2
3,965,817	+				-0.6
3,965,817	+				+0.7
3,965,817	+				+0.1
3,965,817	+				+0.6
3,965,817	+				-0.1
3,965,817	+				-2.3
3,965,817	+				+0.2
3,965,817	+				-1.1
3,965,825	-				+0.6
3,965,825	-				-0.2
3,965,825	-				-0.4
3,965,825	-				+0.3
3,965,832	+				-0.3
3,965,832	+				+0.1
3,965,834	+				-0.9
3,965,835	-				-0.8
3,965,835	-				-2.2
3,965,840	-				+0.6
3,965,875	+				-1.3
3,965,882	-				-0.1
3,965,883	-				-0.5
3,965,883	-				+0.3
3,965,885	+				+0.7
3,965,904	+		GFF3926	0.10	+0.5
3,965,908	+		GFF3926	0.11	-0.0
3,965,934	-		GFF3926	0.14	+0.3
3,965,943	+		GFF3926	0.15	-0.9
3,965,943	+		GFF3926	0.15	-2.3
3,965,951	-		GFF3926	0.16	+0.4
3,965,951	-		GFF3926	0.16	-0.9
3,965,956	-		GFF3926	0.16	-0.6
3,965,976	-		GFF3926	0.19	+0.5
3,965,976	-		GFF3926	0.19	-1.7
3,965,987	-		GFF3926	0.20	+0.5
3,966,004	-		GFF3926	0.22	-0.4
3,966,009	-		GFF3926	0.23	+0.8
3,966,012	+		GFF3926	0.23	+0.3
3,966,015	-		GFF3926	0.23	+0.5
3,966,017	+		GFF3926	0.24	-0.2
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