Strain Fitness in Sphingobium sp. HT1-2 around GFF3908

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,944,056	+		GFF3907	0.28	-0.3
3,944,058	-		GFF3907	0.28	-0.8
3,944,078	+		GFF3907	0.29	-2.3
3,944,078	-		GFF3907	0.29	-2.1
3,944,086	-		GFF3907	0.30	-0.0
3,944,092	-		GFF3907	0.31	+1.0
3,944,139	-		GFF3907	0.35	-0.6
3,944,142	+		GFF3907	0.35	+0.3
3,944,142	-		GFF3907	0.35	-0.6
3,944,171	+		GFF3907	0.37	-0.8
3,944,183	+		GFF3907	0.38	-1.0
3,944,205	+		GFF3907	0.40	+0.0
3,944,257	+		GFF3907	0.45	+0.9
3,944,265	-		GFF3907	0.45	+0.4
3,944,281	+		GFF3907	0.47	-0.3
3,944,289	-		GFF3907	0.47	-2.2
3,944,292	+		GFF3907	0.48	+0.7
3,944,311	-		GFF3907	0.49	-1.7
3,944,311	-		GFF3907	0.49	-2.3
3,944,323	-		GFF3907	0.50	-0.3
3,944,328	-		GFF3907	0.51	+0.2
3,944,348	+		GFF3907	0.53	+0.4
3,944,363	+		GFF3907	0.54	-0.4
3,944,382	-		GFF3907	0.55	-0.3
3,944,384	+		GFF3907	0.56	-0.8
3,944,384	+		GFF3907	0.56	-1.3
3,944,384	+		GFF3907	0.56	+0.5
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	-1.6
3,944,384	+		GFF3907	0.56	-1.8
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	+1.6
3,944,384	+		GFF3907	0.56	+0.6
3,944,384	+		GFF3907	0.56	+0.1
3,944,384	+		GFF3907	0.56	-0.4
3,944,384	+		GFF3907	0.56	-0.6
3,944,384	+		GFF3907	0.56	-0.9
3,944,384	+		GFF3907	0.56	-0.9
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-1.3
3,944,384	+		GFF3907	0.56	-0.2
3,944,384	+		GFF3907	0.56	-0.8
3,944,384	+		GFF3907	0.56	-0.9
3,944,384	+		GFF3907	0.56	+0.6
3,944,384	+		GFF3907	0.56	+1.6
3,944,384	+		GFF3907	0.56	-0.4
3,944,384	+		GFF3907	0.56	-2.4
3,944,384	+		GFF3907	0.56	+0.0
3,944,384	+		GFF3907	0.56	+0.5
3,944,384	+		GFF3907	0.56	+0.1
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	-1.8
3,944,384	+		GFF3907	0.56	-0.9
3,944,384	+		GFF3907	0.56	+0.7
3,944,392	-		GFF3907	0.56	-2.1
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	+0.6
3,944,392	-		GFF3907	0.56	+1.2
3,944,392	-		GFF3907	0.56	-0.2
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-0.4
3,944,392	-		GFF3907	0.56	+0.6
3,944,392	-		GFF3907	0.56	+0.5
3,944,392	-		GFF3907	0.56	-0.7
3,944,392	-		GFF3907	0.56	+0.3
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	-1.1
3,944,392	-		GFF3907	0.56	-0.7
3,944,392	-		GFF3907	0.56	-0.7
3,944,392	-		GFF3907	0.56	+0.7
3,944,392	-		GFF3907	0.56	+0.6
3,944,392	-		GFF3907	0.56	-1.4
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	-1.2
3,944,392	-		GFF3907	0.56	+0.5
3,944,392	-		GFF3907	0.56	-1.9
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	-0.7
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	+0.1
3,944,392	-		GFF3907	0.56	-1.1
3,944,392	-		GFF3907	0.56	-2.8
3,944,392	-		GFF3907	0.56	-1.6
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	-0.2
3,944,392	-		GFF3907	0.56	+0.0
3,944,392	-		GFF3907	0.56	-0.4
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-1.5
3,944,392	-		GFF3907	0.56	+0.8
3,944,397	-		GFF3907	0.57	+0.2
3,944,411	+		GFF3907	0.58	+0.5
3,944,411	-		GFF3907	0.58	+0.3
3,944,416	-		GFF3907	0.58	+0.4
3,944,421	+		GFF3907	0.59	+0.2
3,944,430	+		GFF3907	0.60	-0.5
3,944,438	-		GFF3907	0.60	+0.5
3,944,443	-		GFF3907	0.61	-1.3
3,944,443	-		GFF3907	0.61	-0.7
3,944,453	-		GFF3907	0.61	+0.7
3,944,453	-		GFF3907	0.61	-1.0
3,944,453	-		GFF3907	0.61	+0.5
3,944,459	+		GFF3907	0.62	+0.8
3,944,459	+		GFF3907	0.62	-1.5
3,944,485	+		GFF3907	0.64	-0.4
3,944,511	-		GFF3907	0.66	-0.4
3,944,553	+		GFF3907	0.70	+0.6
3,944,553	+		GFF3907	0.70	-1.7
3,944,560	-		GFF3907	0.71	-1.7
3,944,560	-		GFF3907	0.71	-1.7
3,944,560	-		GFF3907	0.71	-1.3
3,944,561	-		GFF3907	0.71	-0.2
3,944,616	+		GFF3907	0.75	+0.5
3,944,621	+		GFF3907	0.76	+0.9
3,944,621	-		GFF3907	0.76	-0.7
3,944,637	+		GFF3907	0.77	-0.8
3,944,645	-		GFF3907	0.78	-1.0
3,944,645	-		GFF3907	0.78	+0.6
3,944,671	+		GFF3907	0.80	-1.7
3,944,679	-		GFF3907	0.81	+0.8
3,944,679	-		GFF3907	0.81	-0.2
3,944,679	-		GFF3907	0.81	-2.4
3,944,693	+		GFF3907	0.82	-0.5
3,944,693	+		GFF3907	0.82	-1.5
3,944,693	+		GFF3907	0.82	+0.7
3,944,696	-		GFF3907	0.82	+0.7
3,944,703	+		GFF3907	0.83	-1.8
3,944,703	+		GFF3907	0.83	+0.6
3,944,703	+		GFF3907	0.83	-1.3
3,944,706	-		GFF3907	0.83	+0.7
3,944,711	-		GFF3907	0.83	-0.8
3,944,719	-		GFF3907	0.84	+0.9
3,944,726	-		GFF3907	0.85	-1.3
3,944,769	-		GFF3907	0.88	-0.8
3,944,777	+		GFF3907	0.89	+1.0
3,944,777	+		GFF3907	0.89	+0.7
3,944,785	-		GFF3907	0.90	+1.7
3,944,785	-		GFF3907	0.90	+0.7
3,944,786	-		GFF3907	0.90	-0.1
3,944,810	-				+0.7
3,944,835	+				-1.0
3,944,849	+				-0.8
3,944,854	+				+1.0
3,944,944	+				+1.2
3,944,944	+				-1.1
3,944,944	+				-0.3
3,944,944	+				-0.8
3,944,944	+				+0.1
3,944,944	+				-1.8
3,944,952	-				-1.0
3,944,952	-				+0.5
3,944,952	-				+1.2
3,944,967	+				-2.3
3,944,967	-				-0.8
3,944,975	+				-0.0
3,944,978	+				+0.5
3,944,985	+				-0.8
3,944,993	-				-0.6
3,944,993	-				-1.3
3,944,995	+				+0.9
3,944,996	+				-1.1
3,945,003	-				-1.3
3,945,008	-				+0.4
3,945,008	-				+1.1
3,948,627	+				-0.0
3,948,627	+				-2.6
3,948,628	+				-1.3
3,948,638	+				-0.7
3,948,646	-				+0.1
3,948,668	+		GFF3909	0.13	-0.3
3,948,711	-		GFF3909	0.23	-1.2
3,948,718	+		GFF3909	0.25	+1.0
3,948,718	+		GFF3909	0.25	+0.3
3,948,730	-		GFF3909	0.28	+0.2
3,948,775	+		GFF3909	0.39	+0.6
3,948,835	-		GFF3909	0.54	+0.2
3,948,839	-		GFF3909	0.55	-1.1
3,948,861	-		GFF3909	0.60	+0.4
3,948,876	+		GFF3909	0.64	+0.4
3,948,877	+		GFF3909	0.64	-0.2
3,948,891	+		GFF3909	0.67	-0.3
3,948,914	+		GFF3909	0.73	+0.1
3,948,916	+		GFF3909	0.73	-0.5
3,948,916	+		GFF3909	0.73	+0.3
3,948,917	-		GFF3909	0.73	-0.5
3,948,924	-		GFF3909	0.75	-1.1
3,948,939	+		GFF3909	0.79	-1.0
3,948,947	-		GFF3909	0.81	-0.1
3,948,947	-		GFF3909	0.81	+0.6
3,948,949	+		GFF3909	0.81	-2.3
3,948,964	-		GFF3909	0.85	-0.0
3,948,982	+		GFF3909	0.89	-0.7
3,949,000	+				-0.3
3,949,010	+				+0.4
3,949,010	+				-1.2
3,949,010	+				+0.1
3,949,010	+				+0.9
3,949,018	-				+1.1
3,949,018	-				-1.0
3,949,018	-				-0.3
3,949,021	+				+0.3
3,949,053	+				+1.2
3,949,053	+				-0.2
3,949,053	+				-0.6
3,949,053	+				+0.5
3,949,053	+				-0.6
3,949,053	+				-0.3
3,949,061	-				-2.0
3,949,061	-				-0.3
3,949,061	-				+0.1
3,949,065	+				+0.4
3,949,072	-				-2.0
3,949,112	+				-0.1
3,949,112	+				+0.4
3,949,112	+				-2.8
3,949,112	+				-0.4
3,949,119	-				-0.6
3,949,119	-				+0.8
3,949,120	-				+0.1
3,949,120	-				-0.3
3,949,120	-				-1.4
3,949,120	-				-0.6
3,949,120	-				+0.1
3,949,120	-				-1.1
3,949,120	-				-2.4
3,949,127	-				-0.2
3,949,141	+				+0.2
3,949,152	+				-0.9
3,949,155	-				-1.8
3,949,157	-				+0.7
3,949,174	+		GFF3910	0.11	+0.6
3,949,219	+		GFF3910	0.16	+0.4
3,949,219	+		GFF3910	0.16	+1.1
3,949,227	-		GFF3910	0.16	+0.1
3,949,227	-		GFF3910	0.16	+0.3
3,949,277	-		GFF3910	0.22	+0.9
3,949,289	+		GFF3910	0.23	-1.5
3,949,289	+		GFF3910	0.23	+0.4
3,949,289	+		GFF3910	0.23	-0.8
3,949,289	+		GFF3910	0.23	+0.2
3,949,289	+		GFF3910	0.23	+0.3
3,949,289	+		GFF3910	0.23	-0.6
3,949,289	+		GFF3910	0.23	+0.4
3,949,289	+		GFF3910	0.23	-0.0
3,949,289	+		GFF3910	0.23	-1.1
3,949,289	+		GFF3910	0.23	-0.1
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	-0.9
3,949,289	+		GFF3910	0.23	-0.4
3,949,289	+		GFF3910	0.23	-2.7
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	+0.8
3,949,289	+		GFF3910	0.23	-1.1
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	-0.9
3,949,297	-		GFF3910	0.24	-1.1
3,949,297	-		GFF3910	0.24	-0.3
3,949,297	-		GFF3910	0.24	-1.4
3,949,297	-		GFF3910	0.24	-2.2
3,949,297	-		GFF3910	0.24	+0.9
3,949,297	-		GFF3910	0.24	-0.7
3,949,297	-		GFF3910	0.24	+0.8
3,949,297	-		GFF3910	0.24	-0.3
3,949,297	-		GFF3910	0.24	-1.8
3,949,330	+		GFF3910	0.27	-0.1
3,949,332	+		GFF3910	0.27	-1.7
3,949,366	-		GFF3910	0.31	-0.8
3,949,368	+		GFF3910	0.31	-2.4
3,949,394	+		GFF3910	0.34	-1.8
3,949,399	+		GFF3910	0.34	-0.0
3,949,399	+		GFF3910	0.34	-0.6
3,949,399	+		GFF3910	0.34	+0.4
3,949,411	+		GFF3910	0.35	+0.7
3,949,412	-		GFF3910	0.35	-1.3
3,949,417	-		GFF3910	0.36	-2.2
3,949,421	-		GFF3910	0.36	+1.2
3,949,458	-		GFF3910	0.40	-0.4
3,949,469	+		GFF3910	0.41	-0.3
3,949,488	+		GFF3910	0.43	+0.6
3,949,488	+		GFF3910	0.43	-0.4
3,949,488	+		GFF3910	0.43	-0.4
3,949,497	-		GFF3910	0.44	-0.9
3,949,498	+		GFF3910	0.44	-0.8
3,949,502	-		GFF3910	0.45	-0.1
3,949,502	-		GFF3910	0.45	+0.3
3,949,502	-		GFF3910	0.45	-0.3
3,949,506	-		GFF3910	0.45	-0.9
3,949,506	-		GFF3910	0.45	+0.5
3,949,517	-		GFF3910	0.46	-0.1
3,949,518	-		GFF3910	0.46	-0.3
3,949,531	+		GFF3910	0.48	-0.1
3,949,536	-		GFF3910	0.48	-0.6
3,949,567	+		GFF3910	0.51	+0.4
3,949,575	-		GFF3910	0.52	+1.5
3,949,579	+		GFF3910	0.53	+0.2
3,949,581	-		GFF3910	0.53	+0.5