Strain Fitness in Sphingobium sp. HT1-2 around GFF3896

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,932,942	+		GFF3895	0.49	-1.6
3,932,942	+		GFF3895	0.49	-1.1
3,932,944	+		GFF3895	0.49	+0.7
3,932,944	+		GFF3895	0.49	-2.1
3,932,950	-		GFF3895	0.50	-1.7
3,932,950	-		GFF3895	0.50	-1.3
3,932,950	-		GFF3895	0.50	-0.7
3,932,950	-		GFF3895	0.50	-1.6
3,932,950	-		GFF3895	0.50	-1.0
3,932,951	+		GFF3895	0.50	+0.7
3,932,952	-		GFF3895	0.50	-0.8
3,932,979	-		GFF3895	0.51	-1.4
3,932,986	+		GFF3895	0.52	-2.3
3,932,987	-		GFF3895	0.52	+0.5
3,933,017	+		GFF3895	0.54	+1.7
3,933,030	+		GFF3895	0.54	-1.4
3,933,047	+		GFF3895	0.55	+0.1
3,933,088	+		GFF3895	0.58	+1.8
3,933,105	-		GFF3895	0.59	-1.4
3,933,106	-		GFF3895	0.59	-1.1
3,933,138	+		GFF3895	0.61	-0.8
3,933,146	-		GFF3895	0.61	+0.2
3,933,172	+		GFF3895	0.63	+1.2
3,933,196	+		GFF3895	0.64	-1.0
3,933,197	-		GFF3895	0.64	-0.3
3,933,242	+		GFF3895	0.67	-2.2
3,933,252	+		GFF3895	0.68	-1.4
3,933,260	-		GFF3895	0.68	-0.2
3,933,260	-		GFF3895	0.68	-0.6
3,933,260	-		GFF3895	0.68	-0.9
3,933,286	+		GFF3895	0.70	-0.5
3,933,286	+		GFF3895	0.70	-1.1
3,933,291	+		GFF3895	0.70	+1.3
3,933,294	-		GFF3895	0.70	+0.7
3,933,294	-		GFF3895	0.70	-1.1
3,933,294	-		GFF3895	0.70	+1.2
3,933,295	+		GFF3895	0.70	-2.8
3,933,296	+		GFF3895	0.70	+0.0
3,933,296	+		GFF3895	0.70	-0.1
3,933,304	-		GFF3895	0.71	+0.6
3,933,315	+		GFF3895	0.71	+0.9
3,933,323	-		GFF3895	0.72	-2.3
3,933,337	-		GFF3895	0.73	+1.4
3,933,375	-		GFF3895	0.75	+0.4
3,933,377	+		GFF3895	0.75	-1.8
3,933,380	-		GFF3895	0.75	-1.4
3,933,380	-		GFF3895	0.75	+0.5
3,933,385	-		GFF3895	0.76	+0.7
3,933,390	+		GFF3895	0.76	-1.5
3,933,390	-		GFF3895	0.76	+1.1
3,933,390	-		GFF3895	0.76	-0.7
3,933,392	-		GFF3895	0.76	+0.2
3,933,400	+		GFF3895	0.77	-0.6
3,933,403	-		GFF3895	0.77	-0.4
3,933,403	-		GFF3895	0.77	-0.3
3,933,403	-		GFF3895	0.77	-1.1
3,933,413	-		GFF3895	0.77	+0.1
3,933,419	+		GFF3895	0.78	-0.7
3,933,424	+		GFF3895	0.78	+0.5
3,933,452	-		GFF3895	0.80	-0.3
3,933,454	+		GFF3895	0.80	-1.2
3,933,454	+		GFF3895	0.80	-1.1
3,933,454	+		GFF3895	0.80	+0.0
3,933,454	+		GFF3895	0.80	+0.2
3,933,478	+		GFF3895	0.81	-0.8
3,933,478	+		GFF3895	0.81	+0.2
3,933,484	+		GFF3895	0.82	+1.3
3,933,485	+		GFF3895	0.82	-1.4
3,933,486	-		GFF3895	0.82	+0.2
3,933,486	-		GFF3895	0.82	-2.1
3,933,493	-		GFF3895	0.82	+0.6
3,933,533	+		GFF3895	0.84	+0.5
3,933,541	-		GFF3895	0.85	-1.5
3,933,544	-		GFF3895	0.85	+0.9
3,933,578	+		GFF3895	0.87	-0.6
3,933,578	+		GFF3895	0.87	+0.2
3,933,578	+		GFF3895	0.87	+0.2
3,933,614	-		GFF3895	0.89	+0.6
3,933,628	+				+1.1
3,933,636	-				-0.4
3,933,636	-				+1.5
3,933,660	-				-1.7
3,933,666	+				-0.2
3,933,734	+				+0.1
3,933,802	-				+0.5
3,933,802	-				-0.1
3,933,810	+				+0.0
3,933,815	+				-0.5
3,933,815	+				+0.0
3,933,823	-				-1.6
3,933,823	-				-2.7
3,933,830	-				-0.3
3,933,851	-				-1.3
3,933,866	-				-1.2
3,933,905	-				+1.2
3,933,913	-				-1.7
3,933,913	-				+1.9
3,933,943	-				-1.5
3,934,639	-				+0.9
3,934,745	+				+0.3
3,934,750	+				-1.3
3,934,750	+				+0.4
3,934,752	+				-2.0
3,934,758	-				-0.1
3,934,773	+				-0.7
3,934,773	+				+0.3
3,934,773	+				+0.7
3,934,773	+				+0.4
3,934,773	+				+0.1
3,934,773	+				+0.9
3,934,781	-				+0.5
3,934,781	-				+0.1
3,934,781	-				-0.4
3,934,781	-				-0.8
3,934,781	-				-0.5
3,934,797	+				-0.8
3,934,797	+				+0.8
3,934,805	-				-0.7
3,934,805	-				-0.3
3,934,805	-				-1.6
3,934,805	-				+0.3
3,934,810	+				-1.0
3,934,825	+				-2.5
3,934,825	+				-1.8
3,934,825	+				+0.3
3,934,825	+				-0.8
3,934,825	+				-0.5
3,934,829	+				-1.8
3,934,833	-				-0.1
3,934,833	-				-1.3
3,934,833	-				-0.1
3,934,833	-				-0.8
3,934,833	-				-0.4
3,934,833	-				-1.8
3,934,833	-				+0.4
3,934,833	-				+1.1
3,934,835	-				+1.2
3,934,837	-				+0.4
3,934,837	-				+0.7
3,934,838	+				-0.3
3,934,858	+		GFF3897	0.15	-0.8
3,934,878	+		GFF3897	0.22	-2.0
3,934,889	+		GFF3897	0.26	-0.8
3,934,890	+		GFF3897	0.26	+0.0
3,934,906	+		GFF3897	0.31	-0.6
3,934,919	+		GFF3897	0.36	+0.8
3,934,929	+		GFF3897	0.39	+0.3
3,934,937	-		GFF3897	0.42	+0.6
3,934,937	-		GFF3897	0.42	+0.2
3,934,949	-		GFF3897	0.46	-1.3
3,934,949	-		GFF3897	0.46	-3.2
3,934,955	+		GFF3897	0.48	-0.3
3,934,978	-		GFF3897	0.56	-1.0
3,934,978	-		GFF3897	0.56	+0.8
3,934,997	-		GFF3897	0.62	-0.6
3,935,013	+		GFF3897	0.67	-0.4
3,935,033	+		GFF3897	0.74	-0.1
3,935,048	-		GFF3897	0.79	-0.3
3,935,048	-		GFF3897	0.79	-0.1
3,935,053	-		GFF3897	0.81	-1.9
3,935,056	+		GFF3897	0.82	-2.6
3,935,094	-				-2.6
3,935,094	-				-2.1
3,935,094	-				+0.3
3,935,096	-				-1.3
3,935,096	-				-0.1
3,935,103	+				+1.1
3,935,103	+				-1.5
3,935,103	+				+1.2
3,935,111	-				-1.4
3,935,111	-				-1.1
3,935,111	-				+1.0
3,935,122	+				+0.3
3,935,122	+				-0.1
3,935,124	+				-0.1
3,935,124	+				-3.0
3,935,124	+				-0.7
3,935,128	+				-1.8
3,935,133	+				-0.7
3,935,136	-				-1.8
3,935,141	-				-2.9
3,935,150	-				-0.3
3,935,159	+				+1.2
3,935,159	+				-2.0
3,935,159	+				+0.3
3,935,159	+				-1.3
3,935,159	+				+0.6
3,935,159	+				-0.3
3,935,159	+				-1.0
3,935,159	+				-0.4
3,935,159	+				+0.2
3,935,159	+				+0.0
3,935,159	+				-0.8
3,935,159	+				+0.2
3,935,159	+				-0.1
3,935,167	-				+0.7
3,935,167	-				+0.2
3,935,167	-				-0.6
3,935,167	-				-0.2
3,935,167	-				-1.3
3,935,167	-				-1.0
3,935,167	-				-0.2
3,935,167	-				-0.7
3,935,167	-				+0.9
3,935,167	-				-0.5
3,935,167	-				-1.7
3,935,167	-				-1.9
3,935,169	+				-1.8
3,935,177	-				+1.3
3,935,177	-				+0.4
3,935,184	+				-2.1
3,935,191	+				-0.8
3,935,192	-				+0.2
3,935,192	-				-0.5
3,935,192	-				-0.0
3,935,192	-				+0.6
3,935,199	-				+0.2
3,935,201	+				+1.4
3,935,201	+				-2.0
3,935,209	-				-0.1
3,935,215	-		GFF3898	0.10	+0.3
3,935,256	-		GFF3898	0.14	+0.6
3,935,259	-		GFF3898	0.14	-1.4
3,935,263	+		GFF3898	0.14	-0.5
3,935,263	+		GFF3898	0.14	+0.7
3,935,271	-		GFF3898	0.15	+0.1
3,935,271	-		GFF3898	0.15	-2.0
3,935,271	-		GFF3898	0.15	-1.3
3,935,278	+		GFF3898	0.16	-1.0
3,935,284	-		GFF3898	0.16	+0.1
3,935,286	-		GFF3898	0.17	-2.1
3,935,286	-		GFF3898	0.17	+0.2
3,935,290	+		GFF3898	0.17	+0.2
3,935,308	+		GFF3898	0.19	-2.1
3,935,320	-		GFF3898	0.20	-0.1
3,935,326	-		GFF3898	0.20	-1.3
3,935,349	-		GFF3898	0.22	-0.1
3,935,351	+		GFF3898	0.22	+1.2
3,935,351	+		GFF3898	0.22	+0.2
3,935,351	+		GFF3898	0.22	-0.7
3,935,351	+		GFF3898	0.22	-0.8
3,935,354	-		GFF3898	0.23	-1.2
3,935,359	-		GFF3898	0.23	-0.3
3,935,359	-		GFF3898	0.23	+0.1
3,935,359	-		GFF3898	0.23	+1.4
3,935,359	-		GFF3898	0.23	+0.4
3,935,360	+		GFF3898	0.23	+0.3
3,935,368	-		GFF3898	0.24	-0.8
3,935,368	-		GFF3898	0.24	-0.8
3,935,368	-		GFF3898	0.24	+1.2
3,935,371	+		GFF3898	0.24	-1.3
3,935,383	-		GFF3898	0.25	+0.1
3,935,391	-		GFF3898	0.26	+0.7
3,935,401	-		GFF3898	0.27	-1.9
3,935,428	+		GFF3898	0.30	-1.6
3,935,436	-		GFF3898	0.30	-0.7
3,935,436	-		GFF3898	0.30	+0.6
3,935,447	+		GFF3898	0.31	-0.9
3,935,463	+		GFF3898	0.33	-1.0
3,935,463	+		GFF3898	0.33	-1.9
3,935,463	+		GFF3898	0.33	-0.1
3,935,468	+		GFF3898	0.33	+0.2
3,935,469	-		GFF3898	0.33	-0.7
3,935,469	-		GFF3898	0.33	-0.9
3,935,471	-		GFF3898	0.34	-0.3
3,935,471	-		GFF3898	0.34	-0.6
3,935,471	-		GFF3898	0.34	-0.5
3,935,476	-		GFF3898	0.34	-0.3
3,935,477	+		GFF3898	0.34	+0.1
3,935,477	+		GFF3898	0.34	-0.2
3,935,482	+		GFF3898	0.35	-2.0
3,935,482	+		GFF3898	0.35	-0.3
3,935,485	-		GFF3898	0.35	-2.4
3,935,485	-		GFF3898	0.35	+1.0
3,935,485	-		GFF3898	0.35	+0.7
3,935,487	+		GFF3898	0.35	-2.1
3,935,500	+		GFF3898	0.36	-1.4
3,935,500	+		GFF3898	0.36	-0.9
3,935,500	-		GFF3898	0.36	-0.6
3,935,500	-		GFF3898	0.36	-0.5
3,935,500	-		GFF3898	0.36	-0.0
3,935,520	+		GFF3898	0.38	-1.6
3,935,537	+		GFF3898	0.40	-2.0
3,935,537	+		GFF3898	0.40	+0.0
3,935,537	+		GFF3898	0.40	+0.5
3,935,537	+		GFF3898	0.40	-1.1
3,935,537	+		GFF3898	0.40	-1.0
3,935,545	-		GFF3898	0.40	+0.4