Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF388 and GFF389 are separated by 49 nucleotides GFF389 and GFF390 are separated by 10 nucleotides GFF390 and GFF391 are separated by 4 nucleotides GFF391 and GFF392 overlap by 4 nucleotides
GFF388 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 379,073 to 380,614
GFF388
GFF389 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 380,664 to 381,908
GFF389
GFF390 - 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11, at 381,919 to 382,338
GFF390
GFF391 - hypothetical protein, at 382,343 to 382,747
GFF391
GFF392 - Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80), at 382,744 to 383,511
GFF392
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.451 kb on - strand, within GFF388 at 380.508 kb on + strand at 380.558 kb on + strand at 380.560 kb on + strand at 380.603 kb on + strand at 380.626 kb on + strand at 380.630 kb on + strand at 380.630 kb on + strand at 380.630 kb on + strand at 380.635 kb on + strand at 380.644 kb on - strand at 380.650 kb on + strand at 382.341 kb on - strand at 382.341 kb on - strand at 382.350 kb on - strand at 382.407 kb on + strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.417 kb on + strand, within GFF391 at 382.417 kb on + strand, within GFF391 at 382.419 kb on + strand, within GFF391 at 382.424 kb on + strand, within GFF391 at 382.424 kb on + strand, within GFF391 at 382.428 kb on + strand, within GFF391 at 382.432 kb on + strand, within GFF391 at 382.433 kb on + strand, within GFF391 at 382.448 kb on - strand, within GFF391 at 382.449 kb on + strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.481 kb on + strand, within GFF391 at 382.481 kb on + strand, within GFF391 at 382.489 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.515 kb on + strand, within GFF391 at 382.547 kb on + strand, within GFF391 at 382.556 kb on + strand, within GFF391 at 382.569 kb on - strand, within GFF391 at 382.569 kb on - strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.587 kb on - strand, within GFF391 at 382.625 kb on + strand, within GFF391 at 382.625 kb on + strand, within GFF391 at 382.625 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.661 kb on + strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.675 kb on + strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.686 kb on + strand, within GFF391 at 382.689 kb on - strand, within GFF391 at 382.690 kb on + strand, within GFF391 at 382.697 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.708 kb on - strand at 382.723 kb on - strand at 382.731 kb on + strand at 382.739 kb on - strand at 382.740 kb on + strand at 382.750 kb on - strand at 382.762 kb on + strand at 382.765 kb on + strand at 382.775 kb on - strand at 382.787 kb on - strand at 382.792 kb on - strand at 382.817 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.826 kb on - strand, within GFF392 at 382.826 kb on - strand, within GFF392 at 382.826 kb on - strand, within GFF392 at 382.832 kb on + strand, within GFF392 at 382.835 kb on - strand, within GFF392 at 382.861 kb on - strand, within GFF392 at 382.869 kb on - strand, within GFF392 at 382.875 kb on + strand, within GFF392 at 382.878 kb on - strand, within GFF392 at 382.881 kb on + strand, within GFF392 at 382.884 kb on - strand, within GFF392
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 380,451 - GFF388 0.89 -1.5 380,508 + -1.1 380,558 + +1.5 380,560 + -0.1 380,603 + -0.6 380,626 + -0.4 380,630 + -1.0 380,630 + -1.0 380,630 + -1.2 380,635 + -1.2 380,644 - -0.1 380,650 + +0.8 382,341 - +0.0 382,341 - -1.6 382,350 - +0.2 382,407 + GFF391 0.16 -1.2 382,415 - GFF391 0.18 -1.8 382,415 - GFF391 0.18 -1.7 382,415 - GFF391 0.18 +0.4 382,417 + GFF391 0.18 +0.3 382,417 + GFF391 0.18 -1.7 382,419 + GFF391 0.19 +0.1 382,424 + GFF391 0.20 +0.6 382,424 + GFF391 0.20 +1.7 382,428 + GFF391 0.21 -0.8 382,432 + GFF391 0.22 -1.8 382,433 + GFF391 0.22 -2.1 382,448 - GFF391 0.26 -1.1 382,449 + GFF391 0.26 -0.4 382,457 - GFF391 0.28 -1.1 382,457 - GFF391 0.28 +0.0 382,457 - GFF391 0.28 -1.1 382,481 + GFF391 0.34 -0.7 382,481 + GFF391 0.34 -0.1 382,489 - GFF391 0.36 -0.6 382,510 - GFF391 0.41 -2.5 382,510 - GFF391 0.41 -0.6 382,510 - GFF391 0.41 -0.9 382,515 + GFF391 0.42 -1.5 382,547 + GFF391 0.50 +1.2 382,556 + GFF391 0.53 +1.3 382,569 - GFF391 0.56 +0.0 382,569 - GFF391 0.56 -0.1 382,574 + GFF391 0.57 +0.4 382,574 + GFF391 0.57 +0.7 382,574 + GFF391 0.57 -1.1 382,574 + GFF391 0.57 +1.0 382,574 + GFF391 0.57 -0.3 382,582 - GFF391 0.59 -1.6 382,582 - GFF391 0.59 -1.4 382,582 - GFF391 0.59 +0.9 382,587 - GFF391 0.60 -1.9 382,625 + GFF391 0.70 -0.4 382,625 + GFF391 0.70 -1.2 382,625 - GFF391 0.70 -0.6 382,633 - GFF391 0.72 +0.3 382,633 - GFF391 0.72 -0.1 382,633 - GFF391 0.72 -1.6 382,633 - GFF391 0.72 +0.1 382,661 + GFF391 0.79 -0.8 382,669 - GFF391 0.80 -0.5 382,669 - GFF391 0.80 -0.1 382,669 - GFF391 0.80 -1.3 382,669 - GFF391 0.80 +0.6 382,669 - GFF391 0.80 +1.7 382,675 + GFF391 0.82 -0.7 382,683 - GFF391 0.84 +0.0 382,683 - GFF391 0.84 -0.8 382,683 - GFF391 0.84 -0.6 382,683 - GFF391 0.84 +0.4 382,683 - GFF391 0.84 -0.2 382,686 + GFF391 0.85 +0.0 382,689 - GFF391 0.85 +0.3 382,690 + GFF391 0.86 -1.5 382,697 + GFF391 0.87 +0.1 382,700 + GFF391 0.88 +0.7 382,700 + GFF391 0.88 +0.1 382,700 + GFF391 0.88 +0.4 382,700 + GFF391 0.88 +0.7 382,700 + GFF391 0.88 +0.9 382,700 + GFF391 0.88 -0.8 382,708 - -1.4 382,723 - -1.3 382,731 + -0.7 382,739 - -0.6 382,740 + -0.7 382,750 - -0.0 382,762 + -1.2 382,765 + +0.2 382,775 - -0.8 382,787 - +1.1 382,792 - -1.8 382,817 + -0.9 382,818 + +1.0 382,818 + -2.1 382,818 + +0.3 382,818 + +0.9 382,818 + -1.1 382,818 + -1.1 382,826 - GFF392 0.11 +2.0 382,826 - GFF392 0.11 -1.3 382,826 - GFF392 0.11 +0.0 382,832 + GFF392 0.11 +0.6 382,835 - GFF392 0.12 -0.6 382,861 - GFF392 0.15 -1.2 382,869 - GFF392 0.16 +0.0 382,875 + GFF392 0.17 +0.4 382,878 - GFF392 0.17 +0.8 382,881 + GFF392 0.18 -1.1 382,884 - GFF392 0.18 -2.5
Or see this region's nucleotide sequence