Strain Fitness in Sphingobium sp. HT1-2 around GFF3888

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,926,074	+		GFF3886	0.22	-1.9
3,926,088	+		GFF3886	0.24	-0.9
3,926,123	+		GFF3886	0.29	-1.0
3,926,128	+		GFF3886	0.30	+1.0
3,926,136	-		GFF3886	0.31	+1.2
3,926,153	+		GFF3886	0.34	-0.3
3,926,163	+		GFF3886	0.35	+0.0
3,926,166	-		GFF3886	0.36	+0.4
3,926,192	-		GFF3886	0.40	+1.2
3,926,194	+		GFF3886	0.40	-0.1
3,926,194	+		GFF3886	0.40	+0.5
3,926,194	+		GFF3886	0.40	-0.9
3,926,194	+		GFF3886	0.40	-0.5
3,926,194	+		GFF3886	0.40	+0.9
3,926,199	+		GFF3886	0.41	+0.6
3,926,202	-		GFF3886	0.41	-1.0
3,926,202	-		GFF3886	0.41	-1.0
3,926,202	-		GFF3886	0.41	-1.5
3,926,202	-		GFF3886	0.41	+1.1
3,926,202	-		GFF3886	0.41	+0.7
3,926,202	-		GFF3886	0.41	+1.6
3,926,207	-		GFF3886	0.42	-1.1
3,926,212	+		GFF3886	0.43	-0.2
3,926,223	+		GFF3886	0.44	-0.1
3,926,223	+		GFF3886	0.44	-0.9
3,926,223	+		GFF3886	0.44	+0.0
3,926,223	+		GFF3886	0.44	-1.1
3,926,223	+		GFF3886	0.44	+0.4
3,926,223	+		GFF3886	0.44	-1.8
3,926,223	+		GFF3886	0.44	-0.9
3,926,223	+		GFF3886	0.44	-0.3
3,926,231	-		GFF3886	0.45	+0.8
3,926,231	-		GFF3886	0.45	+1.3
3,926,231	-		GFF3886	0.45	-0.3
3,926,231	-		GFF3886	0.45	+1.4
3,926,231	-		GFF3886	0.45	-1.0
3,926,231	-		GFF3886	0.45	-0.6
3,926,231	-		GFF3886	0.45	-2.3
3,926,231	-		GFF3886	0.45	-0.2
3,926,231	-		GFF3886	0.45	-0.3
3,926,231	-		GFF3886	0.45	-1.1
3,926,231	-		GFF3886	0.45	-1.1
3,926,231	-		GFF3886	0.45	-0.5
3,926,236	-		GFF3886	0.46	+0.8
3,926,236	-		GFF3886	0.46	+0.1
3,926,273	+		GFF3886	0.52	+0.4
3,926,273	+		GFF3886	0.52	+1.0
3,926,278	+		GFF3886	0.53	-1.5
3,926,283	+		GFF3886	0.53	+0.2
3,926,286	-		GFF3886	0.54	+1.3
3,926,288	+		GFF3886	0.54	+0.2
3,926,307	-		GFF3886	0.57	-0.4
3,926,308	-		GFF3886	0.57	+0.1
3,926,366	-		GFF3886	0.66	-1.0
3,926,371	+		GFF3886	0.67	+1.1
3,926,371	+		GFF3886	0.67	-0.4
3,926,371	+		GFF3886	0.67	+0.9
3,926,379	-		GFF3886	0.68	-1.6
3,926,379	-		GFF3886	0.68	-0.2
3,926,379	-		GFF3886	0.68	-1.1
3,926,419	+		GFF3886	0.74	+0.6
3,926,438	-		GFF3886	0.77	-1.1
3,926,447	+		GFF3886	0.78	+1.1
3,926,450	-		GFF3886	0.78	+0.4
3,926,466	+		GFF3886	0.81	-1.0
3,926,474	-		GFF3886	0.82	-0.4
3,926,484	+		GFF3886	0.83	-0.8
3,926,493	-		GFF3886	0.85	-0.8
3,926,536	+				+0.1
3,926,546	+				-1.1
3,926,567	-				-2.4
3,926,569	+				+1.0
3,926,581	-				-0.5
3,926,581	-				-0.7
3,926,583	-				-0.9
3,926,588	+				-0.3
3,926,588	+				+0.2
3,926,596	-				-1.0
3,926,604	+				-0.3
3,926,639	-				+0.1
3,926,662	-				-1.1
3,926,662	-				-0.8
3,926,662	-				-0.3
3,926,662	-				-1.8
3,926,672	-				-0.3
3,926,672	-				-0.6
3,926,682	-				+0.5
3,926,687	-				-0.8
3,926,691	-				-1.4
3,926,707	+				-1.1
3,926,710	-				+1.0
3,926,712	+				-0.1
3,926,718	+				-1.8
3,926,747	+		GFF3887	0.12	-0.9
3,926,751	-		GFF3887	0.13	-1.4
3,926,774	+		GFF3887	0.20	-1.6
3,926,796	+		GFF3887	0.27	-1.7
3,926,797	+		GFF3887	0.27	-2.4
3,926,797	+		GFF3887	0.27	+1.1
3,926,805	-		GFF3887	0.29	+0.6
3,926,805	-		GFF3887	0.29	-0.3
3,926,807	+		GFF3887	0.30	-0.2
3,926,812	+		GFF3887	0.31	-1.4
3,926,815	-		GFF3887	0.32	+1.1
3,926,817	+		GFF3887	0.33	-0.7
3,926,817	+		GFF3887	0.33	-1.1
3,926,817	+		GFF3887	0.33	+0.1
3,926,817	+		GFF3887	0.33	+0.2
3,926,817	+		GFF3887	0.33	-0.7
3,926,817	+		GFF3887	0.33	+0.6
3,926,817	+		GFF3887	0.33	-0.7
3,926,817	+		GFF3887	0.33	+0.5
3,926,817	+		GFF3887	0.33	-1.0
3,926,817	+		GFF3887	0.33	+0.7
3,926,820	-		GFF3887	0.34	+0.6
3,926,825	-		GFF3887	0.35	-0.4
3,926,825	-		GFF3887	0.35	+0.3
3,926,825	-		GFF3887	0.35	-2.0
3,926,825	-		GFF3887	0.35	+0.5
3,926,825	-		GFF3887	0.35	+0.2
3,926,825	-		GFF3887	0.35	-0.9
3,926,825	-		GFF3887	0.35	-0.4
3,926,830	-		GFF3887	0.37	-1.1
3,926,832	+		GFF3887	0.38	-0.5
3,926,832	+		GFF3887	0.38	-2.3
3,926,840	-		GFF3887	0.40	-0.4
3,926,840	-		GFF3887	0.40	-2.6
3,926,840	-		GFF3887	0.40	-1.4
3,926,845	+		GFF3887	0.42	+1.1
3,926,849	+		GFF3887	0.43	-0.3
3,926,852	-		GFF3887	0.44	+2.0
3,926,852	-		GFF3887	0.44	+0.4
3,926,854	+		GFF3887	0.44	-1.3
3,926,886	-		GFF3887	0.54	+0.6
3,926,886	-		GFF3887	0.54	+0.4
3,926,886	-		GFF3887	0.54	-0.5
3,926,895	-		GFF3887	0.57	+1.1
3,926,897	-		GFF3887	0.57	-3.0
3,926,897	-		GFF3887	0.57	-0.6
3,926,902	+		GFF3887	0.59	-0.1
3,926,902	+		GFF3887	0.59	+0.9
3,926,907	+		GFF3887	0.61	+0.6
3,926,918	+		GFF3887	0.64	-0.9
3,926,919	+		GFF3887	0.64	-0.4
3,926,942	+		GFF3887	0.71	-1.7
3,926,942	+		GFF3887	0.71	-0.4
3,926,942	+		GFF3887	0.71	+0.7
3,926,969	+		GFF3887	0.80	-0.6
3,926,977	+		GFF3887	0.82	-2.4
3,927,000	-		GFF3887	0.89	+0.4
3,927,010	-				+0.4
3,927,012	+				+0.7
3,927,013	+				-1.4
3,927,013	+				+0.2
3,927,013	+				+0.2
3,927,021	-				-1.1
3,927,023	+				+0.9
3,927,046	+				+0.7
3,927,051	+				-1.0
3,927,059	-				-1.5
3,927,059	-				+0.3
3,927,059	-				-1.5
3,927,073	+				-0.3
3,927,930	-				+0.4
3,927,972	+				+0.9
3,927,972	+				-1.1
3,927,990	-				+0.2
3,928,004	+				-0.3
3,928,013	+				-1.4
3,928,013	+				-1.7
3,928,013	-				+0.2
3,928,021	-		GFF3889	0.11	+0.2
3,928,021	-		GFF3889	0.11	-0.2
3,928,021	-		GFF3889	0.11	-1.0
3,928,023	+		GFF3889	0.12	-1.1
3,928,023	+		GFF3889	0.12	-0.2
3,928,023	+		GFF3889	0.12	-2.0
3,928,023	+		GFF3889	0.12	-0.7
3,928,024	+		GFF3889	0.12	-2.9
3,928,031	-		GFF3889	0.14	+1.2
3,928,031	-		GFF3889	0.14	-0.8
3,928,032	-		GFF3889	0.14	-1.0
3,928,036	+		GFF3889	0.16	+0.8
3,928,042	+		GFF3889	0.17	+0.9
3,928,042	+		GFF3889	0.17	-0.5
3,928,077	+		GFF3889	0.28	-1.7
3,928,100	-		GFF3889	0.35	-0.8
3,928,114	+		GFF3889	0.39	+0.1
3,928,122	-		GFF3889	0.41	-1.2
3,928,157	-		GFF3889	0.52	+0.4
3,928,157	-		GFF3889	0.52	-0.3
3,928,157	-		GFF3889	0.52	-0.3
3,928,167	-		GFF3889	0.55	-0.4
3,928,206	-		GFF3889	0.67	+0.6
3,928,211	-		GFF3889	0.68	-0.2
3,928,241	-		GFF3889	0.77	-0.8
3,928,245	-		GFF3889	0.78	-0.6
3,928,261	+		GFF3889	0.83	-0.3
3,928,265	-		GFF3889	0.84	+0.5
3,928,342	-				-1.4
3,928,345	-				+0.9
3,928,350	-				+0.2
3,928,350	-				-1.8
3,928,350	-				-1.4
3,928,355	-				+0.7
3,928,360	-				+0.2
3,928,381	+				-2.3
3,928,396	+				-0.3
3,928,396	+				+0.4
3,928,397	+				-0.5
3,928,403	+				-1.4
3,928,404	+				-0.5
3,928,404	+				-1.1
3,928,404	+				-0.4
3,928,405	-				-0.1
3,928,411	-				+0.4
3,928,411	-				-0.3
3,928,411	-				+0.1
3,928,411	-				+0.6
3,928,411	-				+1.3
3,928,411	-				-0.6
3,928,412	-				-1.7
3,928,412	-				-0.5
3,928,412	-				+0.4
3,928,412	-				-1.8
3,928,412	-				+1.6
3,928,412	-				+0.1
3,928,478	-				-0.2
3,928,822	+		GFF3890	0.42	+0.6
3,928,836	+		GFF3890	0.43	-0.7