Strain Fitness in Sphingobium sp. HT1-2 around GFF3883

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,923,688	-		GFF3882	0.30	+0.9
3,923,688	-		GFF3882	0.30	+0.9
3,923,688	-		GFF3882	0.30	-0.8
3,923,688	-		GFF3882	0.30	+0.3
3,923,688	-		GFF3882	0.30	-0.9
3,923,688	-		GFF3882	0.30	-0.9
3,923,688	-		GFF3882	0.30	+0.3
3,923,688	-		GFF3882	0.30	-1.2
3,923,688	-		GFF3882	0.30	+0.7
3,923,688	-		GFF3882	0.30	+0.6
3,923,688	-		GFF3882	0.30	-0.2
3,923,688	-		GFF3882	0.30	+0.4
3,923,715	-		GFF3882	0.32	+0.5
3,923,722	-		GFF3882	0.33	+0.5
3,923,727	+		GFF3882	0.33	-1.4
3,923,761	+		GFF3882	0.36	+0.2
3,923,769	+		GFF3882	0.37	-1.6
3,923,774	+		GFF3882	0.37	-0.2
3,923,776	+		GFF3882	0.37	-0.9
3,923,776	+		GFF3882	0.37	+0.3
3,923,777	-		GFF3882	0.38	+0.2
3,923,777	-		GFF3882	0.38	-1.6
3,923,779	+		GFF3882	0.38	-0.4
3,923,779	+		GFF3882	0.38	-0.4
3,923,779	+		GFF3882	0.38	-1.3
3,923,779	+		GFF3882	0.38	-0.3
3,923,779	+		GFF3882	0.38	-0.9
3,923,782	-		GFF3882	0.38	+1.5
3,923,784	-		GFF3882	0.38	-1.0
3,923,786	+		GFF3882	0.38	+1.2
3,923,787	-		GFF3882	0.38	+0.3
3,923,787	-		GFF3882	0.38	+1.5
3,923,787	-		GFF3882	0.38	+0.2
3,923,787	-		GFF3882	0.38	+0.4
3,923,787	-		GFF3882	0.38	+0.2
3,923,787	-		GFF3882	0.38	-0.4
3,923,787	-		GFF3882	0.38	-0.2
3,923,791	+		GFF3882	0.39	+0.1
3,923,807	+		GFF3882	0.40	+0.4
3,923,829	+		GFF3882	0.42	-0.1
3,923,829	+		GFF3882	0.42	-0.9
3,923,853	+		GFF3882	0.44	+1.5
3,923,858	+		GFF3882	0.44	-0.4
3,923,858	+		GFF3882	0.44	+0.0
3,923,866	-		GFF3882	0.45	-0.5
3,923,885	+		GFF3882	0.47	+1.0
3,923,885	+		GFF3882	0.47	-1.1
3,923,885	+		GFF3882	0.47	-1.6
3,923,885	+		GFF3882	0.47	-0.6
3,923,885	+		GFF3882	0.47	+0.7
3,923,885	+		GFF3882	0.47	+0.0
3,923,885	+		GFF3882	0.47	-0.1
3,923,893	-		GFF3882	0.47	-1.0
3,923,893	-		GFF3882	0.47	-1.1
3,923,914	+		GFF3882	0.49	-2.1
3,923,914	+		GFF3882	0.49	+0.2
3,923,919	+		GFF3882	0.50	-1.3
3,923,922	-		GFF3882	0.50	-2.8
3,923,922	-		GFF3882	0.50	-1.6
3,923,927	-		GFF3882	0.50	-0.3
3,923,927	-		GFF3882	0.50	+0.8
3,923,931	+		GFF3882	0.51	-0.7
3,923,931	+		GFF3882	0.51	-1.4
3,923,931	+		GFF3882	0.51	-0.3
3,923,931	+		GFF3882	0.51	-1.1
3,923,939	-		GFF3882	0.51	-1.8
3,923,941	+		GFF3882	0.52	-2.7
3,923,942	+		GFF3882	0.52	+1.4
3,923,959	+		GFF3882	0.53	+0.0
3,923,959	+		GFF3882	0.53	-1.6
3,923,967	+		GFF3882	0.54	-0.5
3,923,967	+		GFF3882	0.54	+0.5
3,923,967	-		GFF3882	0.54	+0.8
3,923,982	+		GFF3882	0.55	+1.0
3,923,982	+		GFF3882	0.55	-0.7
3,923,982	+		GFF3882	0.55	+0.4
3,923,990	-		GFF3882	0.56	-0.7
3,923,990	-		GFF3882	0.56	+0.6
3,923,990	-		GFF3882	0.56	+1.7
3,923,990	-		GFF3882	0.56	-1.4
3,923,995	+		GFF3882	0.56	-0.4
3,924,003	-		GFF3882	0.57	+1.2
3,924,017	+		GFF3882	0.58	-0.5
3,924,020	-		GFF3882	0.58	-0.1
3,924,020	-		GFF3882	0.58	-1.5
3,924,022	+		GFF3882	0.59	-1.6
3,924,022	+		GFF3882	0.59	-2.1
3,924,030	-		GFF3882	0.59	-2.2
3,924,030	-		GFF3882	0.59	+0.2
3,924,030	-		GFF3882	0.59	-1.6
3,924,035	+		GFF3882	0.60	+0.8
3,924,039	-		GFF3882	0.60	+0.2
3,924,043	-		GFF3882	0.60	-0.8
3,924,070	+		GFF3882	0.63	+0.7
3,924,120	-		GFF3882	0.67	-0.2
3,924,122	+		GFF3882	0.67	-0.3
3,924,130	-		GFF3882	0.68	+0.4
3,924,130	-		GFF3882	0.68	-0.3
3,924,137	+		GFF3882	0.68	+1.0
3,924,191	+		GFF3882	0.73	+1.1
3,924,200	+		GFF3882	0.74	-1.7
3,924,200	+		GFF3882	0.74	-0.8
3,924,201	+		GFF3882	0.74	+0.7
3,924,216	-		GFF3882	0.75	-0.1
3,924,223	-		GFF3882	0.76	+0.3
3,924,236	-		GFF3882	0.77	+0.6
3,924,266	+		GFF3882	0.79	+0.5
3,924,273	+		GFF3882	0.80	-0.6
3,924,273	-		GFF3882	0.80	+1.1
3,924,281	-		GFF3882	0.81	-1.5
3,924,304	+		GFF3882	0.83	-1.1
3,924,344	-		GFF3882	0.86	-2.3
3,924,363	+		GFF3882	0.88	-1.8
3,924,378	+		GFF3882	0.89	-1.6
3,924,387	-		GFF3882	0.90	+1.1
3,924,387	-		GFF3882	0.90	-0.1
3,924,387	-		GFF3882	0.90	-0.1
3,924,432	-				+0.0
3,924,446	+				-1.2
3,924,446	+				+0.2
3,924,447	-				-1.5
3,924,449	-				-1.4
3,924,454	-				-2.3
3,924,455	+				+1.2
3,924,460	+				-1.1
3,924,460	+				+0.4
3,924,460	+				+0.1
3,924,468	-				-0.7
3,924,468	-				-0.9
3,924,471	-				+0.0
3,924,508	-				-2.2
3,924,523	-				-2.4
3,924,537	+				+0.5
3,924,541	-				-0.4
3,924,566	-				+0.5
3,924,582	+				+0.3
3,924,582	+				-0.2
3,924,582	+				-0.9
3,924,582	+				-0.4
3,924,595	+				+0.4
3,924,611	-				-1.6
3,924,616	+				-2.0
3,924,616	+				-1.3
3,924,616	-				+1.1
3,924,632	+				+0.6
3,924,668	+				-0.6
3,924,668	+				-0.7
3,924,668	+				+0.2
3,924,668	+				+0.1
3,924,668	+				-0.3
3,924,668	+				-0.3
3,924,668	+				-1.1
3,924,668	+				-2.1
3,924,668	+				-0.2
3,924,668	+				+0.3
3,924,668	+				+0.6
3,924,668	+				-1.4
3,924,668	+				-0.7
3,924,676	-				+0.3
3,924,676	-				-0.6
3,924,676	-				-2.1
3,924,676	-				-1.1
3,924,676	-				+0.0
3,924,676	-				-0.5
3,924,676	-				-0.8
3,924,676	-				-2.1
3,924,676	-				-0.7
3,924,678	+				-0.4
3,924,683	+				-0.3
3,924,683	+				+0.5
3,924,683	+				+1.5
3,924,683	+				+0.0
3,924,683	+				+0.6
3,924,683	+				-0.0
3,924,683	+				+0.2
3,924,686	-				+0.8
3,924,686	-				+1.5
3,924,691	-				+1.0
3,924,691	-				-0.1
3,924,691	-				+0.7
3,924,749	-		GFF3883	0.30	+0.2
3,924,774	-		GFF3883	0.41	+0.0
3,924,808	-		GFF3883	0.57	-0.1
3,924,821	+		GFF3883	0.63	+0.2
3,924,863	+		GFF3883	0.83	-1.5
3,924,865	+		GFF3883	0.84	-1.3
3,924,870	+		GFF3883	0.86	-1.1
3,924,870	+		GFF3883	0.86	-0.1
3,924,878	-				+0.4
3,924,878	-				+1.3
3,924,878	-				-0.1
3,924,878	-				+0.7
3,924,878	-				-0.7
3,924,965	+				+0.6
3,924,965	+				+0.6
3,924,973	-				-1.3
3,924,977	-				-0.3
3,924,983	+				-0.5
3,924,990	-				-1.7
3,925,069	-				-0.9
3,925,074	+				+0.0
3,925,075	+				+0.0
3,925,108	-				+1.3
3,925,119	-				-1.3
3,925,121	-				+0.9
3,925,127	-				-1.6
3,925,131	-				+0.0
3,925,155	+				+0.4
3,925,155	+				-1.8
3,925,155	+				-0.1
3,925,155	+				+1.1
3,925,155	+				-0.3
3,925,155	+				-3.5
3,925,161	+				+0.0
3,925,162	+				-0.2
3,925,162	+				-0.3
3,925,163	-				+0.6
3,925,163	-				-0.8
3,925,163	-				+1.9
3,925,163	-				-1.4
3,925,163	-				-0.8
3,925,163	-				-1.4
3,925,163	-				+0.0
3,925,163	-				+0.5
3,925,163	-				-0.6
3,925,163	-				-1.0
3,925,168	-				-0.9
3,925,170	-				-0.1
3,925,170	-				-0.6
3,925,205	-				+0.1
3,925,207	-				+0.1
3,925,207	-				-0.6
3,925,210	+				-0.1
3,925,211	+				+0.7
3,925,218	-				+0.6
3,925,249	+				+0.3
3,925,364	-				-0.1
3,925,365	-				+1.3
3,925,374	-				-0.9
3,925,379	-				+0.2
3,925,401	-				+0.4
3,925,401	-				+0.1
3,925,876	+				+1.1
3,925,884	-				+0.6