Strain Fitness in Sphingobium sp. HT1-2 around GFF3874

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,912,721	+		GFF3872	0.37	-0.4
3,912,729	+		GFF3872	0.38	+0.4
3,912,758	+		GFF3872	0.42	+0.6
3,912,778	+		GFF3872	0.45	-1.1
3,912,789	+		GFF3872	0.46	-0.5
3,912,789	+		GFF3872	0.46	-1.6
3,912,789	+		GFF3872	0.46	-0.4
3,912,789	+		GFF3872	0.46	+0.7
3,912,789	+		GFF3872	0.46	-0.7
3,912,789	+		GFF3872	0.46	-0.9
3,912,789	+		GFF3872	0.46	+0.4
3,912,789	+		GFF3872	0.46	-0.4
3,912,795	-		GFF3872	0.47	-1.3
3,912,797	-		GFF3872	0.47	-2.6
3,912,797	-		GFF3872	0.47	-1.1
3,912,797	-		GFF3872	0.47	-0.7
3,912,797	-		GFF3872	0.47	-1.3
3,912,803	+		GFF3872	0.48	+0.0
3,912,806	-		GFF3872	0.48	+1.2
3,912,811	-		GFF3872	0.49	+0.2
3,912,848	-		GFF3872	0.53	-1.2
3,912,861	+		GFF3872	0.55	+0.2
3,912,868	-		GFF3872	0.56	-0.3
3,912,886	+		GFF3872	0.58	-1.4
3,912,886	+		GFF3872	0.58	-0.8
3,912,894	+		GFF3872	0.59	-2.9
3,912,894	+		GFF3872	0.59	-1.8
3,912,894	-		GFF3872	0.59	-2.5
3,912,894	-		GFF3872	0.59	-0.6
3,912,894	-		GFF3872	0.59	+0.2
3,912,894	-		GFF3872	0.59	-1.3
3,912,894	-		GFF3872	0.59	-0.7
3,912,894	-		GFF3872	0.59	-0.0
3,912,899	+		GFF3872	0.60	+0.2
3,912,902	-		GFF3872	0.60	-0.8
3,912,902	-		GFF3872	0.60	+0.6
3,912,907	-		GFF3872	0.61	-1.6
3,912,909	+		GFF3872	0.61	+1.7
3,912,909	+		GFF3872	0.61	-1.8
3,912,918	+		GFF3872	0.62	-1.6
3,912,918	+		GFF3872	0.62	+0.0
3,912,926	-		GFF3872	0.63	+0.0
3,912,946	-		GFF3872	0.66	+0.9
3,912,956	+		GFF3872	0.67	+0.0
3,912,959	-		GFF3872	0.67	-1.3
3,912,970	-		GFF3872	0.69	-0.8
3,912,988	+		GFF3872	0.71	-1.0
3,913,016	+		GFF3872	0.74	+1.1
3,913,042	-		GFF3872	0.78	+0.2
3,913,044	+		GFF3872	0.78	+0.5
3,913,056	+		GFF3872	0.79	-1.9
3,913,058	+		GFF3872	0.80	+0.8
3,913,059	-		GFF3872	0.80	-1.4
3,913,095	+		GFF3872	0.84	+0.1
3,913,095	+		GFF3872	0.84	+2.6
3,913,095	+		GFF3872	0.84	-2.7
3,913,095	+		GFF3872	0.84	+0.0
3,913,103	-		GFF3872	0.85	-0.1
3,913,103	-		GFF3872	0.85	+0.2
3,913,117	+		GFF3872	0.87	+0.3
3,913,117	+		GFF3872	0.87	-0.3
3,913,117	+		GFF3872	0.87	-0.3
3,913,117	+		GFF3872	0.87	-1.1
3,913,117	+		GFF3872	0.87	-1.4
3,913,117	+		GFF3872	0.87	+0.1
3,913,117	+		GFF3872	0.87	+0.3
3,913,117	+		GFF3872	0.87	-0.7
3,913,117	+		GFF3872	0.87	+0.5
3,913,117	+		GFF3872	0.87	-2.7
3,913,117	+		GFF3872	0.87	-0.3
3,913,117	+		GFF3872	0.87	+0.2
3,913,125	-		GFF3872	0.88	-0.2
3,913,125	-		GFF3872	0.88	+0.1
3,913,125	-		GFF3872	0.88	+0.3
3,913,125	-		GFF3872	0.88	+1.5
3,913,125	-		GFF3872	0.88	-1.4
3,913,125	-		GFF3872	0.88	+1.3
3,913,125	-		GFF3872	0.88	-0.7
3,913,125	-		GFF3872	0.88	-1.4
3,913,130	+		GFF3872	0.89	-0.1
3,913,148	-				-0.7
3,913,158	-				-0.2
3,913,159	+				+0.5
3,913,171	+				-1.0
3,913,197	+				-0.5
3,913,197	+				-0.2
3,913,197	+				-0.6
3,913,205	-				-0.3
3,913,205	-				+0.2
3,913,205	-				-0.4
3,913,210	+				-0.4
3,913,210	+				-0.3
3,913,210	+				+1.0
3,913,216	-				-0.2
3,913,228	+				-2.1
3,913,228	+				-0.7
3,913,259	+				+0.1
3,913,267	-				+0.4
3,913,298	-		GFF3873	0.16	-1.6
3,913,331	+		GFF3873	0.22	+0.8
3,913,337	+		GFF3873	0.24	-2.1
3,913,339	-		GFF3873	0.24	-0.5
3,913,339	-		GFF3873	0.24	-1.4
3,913,355	+		GFF3873	0.27	+0.2
3,913,381	+		GFF3873	0.33	-1.4
3,913,389	-		GFF3873	0.34	+0.1
3,913,389	-		GFF3873	0.34	-2.0
3,913,402	+		GFF3873	0.37	+0.1
3,913,403	-		GFF3873	0.37	-1.6
3,913,410	-		GFF3873	0.38	+0.9
3,913,410	-		GFF3873	0.38	+0.4
3,913,433	-		GFF3873	0.43	-0.1
3,913,435	+		GFF3873	0.43	-1.1
3,913,435	+		GFF3873	0.43	+0.2
3,913,435	+		GFF3873	0.43	+0.9
3,913,443	-		GFF3873	0.45	+0.2
3,913,457	+		GFF3873	0.48	+0.6
3,913,468	+		GFF3873	0.50	-1.1
3,913,476	-		GFF3873	0.52	+0.2
3,913,481	-		GFF3873	0.53	+0.1
3,913,481	-		GFF3873	0.53	-0.9
3,913,490	+		GFF3873	0.55	+0.6
3,913,494	+		GFF3873	0.55	+1.1
3,913,503	-		GFF3873	0.57	-0.2
3,913,505	+		GFF3873	0.58	+0.4
3,913,525	+		GFF3873	0.62	+0.3
3,913,560	+		GFF3873	0.69	-2.4
3,913,590	-		GFF3873	0.75	-0.3
3,913,629	+		GFF3873	0.83	+0.7
3,913,656	+		GFF3873	0.88	-0.7
3,913,667	+				-1.1
3,913,670	-				-0.2
3,913,675	-				+0.5
3,913,687	+				+0.2
3,913,694	+				-0.8
3,913,703	+				-0.6
3,913,711	-				-0.8
3,913,713	+				+0.3
3,913,716	+				-1.1
3,913,721	+				-0.7
3,913,722	+				-0.8
3,913,722	+				+0.0
3,913,730	-				-0.3
3,913,732	+				-1.1
3,913,732	+				-0.2
3,913,741	-				+0.5
3,913,770	+		GFF3874	0.13	-0.4
3,913,777	+		GFF3874	0.15	-0.5
3,913,777	+		GFF3874	0.15	-0.6
3,913,778	+		GFF3874	0.15	+0.5
3,913,782	+		GFF3874	0.16	+0.0
3,913,785	-		GFF3874	0.16	-1.3
3,913,785	-		GFF3874	0.16	+0.1
3,913,785	-		GFF3874	0.16	+0.8
3,913,785	-		GFF3874	0.16	+0.3
3,913,785	-		GFF3874	0.16	-1.1
3,913,785	-		GFF3874	0.16	-0.5
3,913,786	-		GFF3874	0.16	+0.7
3,913,789	+		GFF3874	0.17	-0.3
3,913,789	+		GFF3874	0.17	-0.2
3,913,789	+		GFF3874	0.17	-0.8
3,913,790	-		GFF3874	0.17	-1.4
3,913,804	+		GFF3874	0.20	-2.1
3,913,804	+		GFF3874	0.20	+0.0
3,913,807	-		GFF3874	0.21	-0.5
3,913,809	+		GFF3874	0.21	+0.2
3,913,809	+		GFF3874	0.21	-0.8
3,913,809	+		GFF3874	0.21	+0.2
3,913,809	+		GFF3874	0.21	-1.1
3,913,809	+		GFF3874	0.21	+0.2
3,913,809	+		GFF3874	0.21	+0.5
3,913,812	-		GFF3874	0.22	-0.2
3,913,812	-		GFF3874	0.22	-0.2
3,913,812	-		GFF3874	0.22	+0.3
3,913,816	+		GFF3874	0.23	-1.1
3,913,816	+		GFF3874	0.23	+0.4
3,913,817	-		GFF3874	0.23	-1.2
3,913,817	-		GFF3874	0.23	-2.3
3,913,824	+		GFF3874	0.25	-0.1
3,913,824	-		GFF3874	0.25	-0.8
3,913,832	-		GFF3874	0.26	-0.8
3,913,833	+		GFF3874	0.26	+1.0
3,913,835	+		GFF3874	0.27	-1.2
3,913,851	-		GFF3874	0.30	-0.3
3,913,871	+		GFF3874	0.35	-0.1
3,913,871	+		GFF3874	0.35	+0.1
3,913,871	+		GFF3874	0.35	+0.2
3,913,871	+		GFF3874	0.35	-0.6
3,913,871	+		GFF3874	0.35	-1.3
3,913,871	+		GFF3874	0.35	-1.4
3,913,871	+		GFF3874	0.35	+0.4
3,913,871	+		GFF3874	0.35	-0.3
3,913,871	+		GFF3874	0.35	+1.6
3,913,874	-		GFF3874	0.35	-0.5
3,913,879	-		GFF3874	0.36	+0.1
3,913,879	-		GFF3874	0.36	+0.3
3,913,879	-		GFF3874	0.36	-2.6
3,913,879	-		GFF3874	0.36	-0.5
3,913,879	-		GFF3874	0.36	+0.3
3,913,879	-		GFF3874	0.36	-0.4
3,913,879	-		GFF3874	0.36	-0.7
3,913,879	-		GFF3874	0.36	-2.4
3,913,879	-		GFF3874	0.36	-1.1
3,913,879	-		GFF3874	0.36	-2.5
3,913,879	-		GFF3874	0.36	-1.2
3,913,879	-		GFF3874	0.36	-2.7
3,913,917	+		GFF3874	0.44	+1.1
3,913,941	-		GFF3874	0.50	+1.2
3,913,951	+		GFF3874	0.52	-2.1
3,913,956	+		GFF3874	0.53	-0.8
3,913,958	+		GFF3874	0.53	-1.4
3,913,966	-		GFF3874	0.55	-2.3
3,913,985	-		GFF3874	0.59	+0.2
3,913,988	-		GFF3874	0.60	+0.0
3,914,003	+		GFF3874	0.63	-1.2
3,914,004	-		GFF3874	0.63	+0.2
3,914,004	-		GFF3874	0.63	-1.3
3,914,049	+		GFF3874	0.73	-0.6
3,914,057	-		GFF3874	0.74	-0.9
3,914,062	+		GFF3874	0.75	-0.6
3,914,062	+		GFF3874	0.75	+0.7
3,914,062	+		GFF3874	0.75	-0.5
3,914,065	-		GFF3874	0.76	+0.1
3,914,070	-		GFF3874	0.77	+0.1
3,914,070	-		GFF3874	0.77	-2.0
3,914,077	+		GFF3874	0.79	-1.4
3,914,102	+		GFF3874	0.84	-1.8
3,914,104	+		GFF3874	0.84	+0.8
3,914,132	+				-0.2
3,914,137	+				-0.6
3,914,137	+				-1.1
3,914,137	+				-2.6
3,914,137	+				-2.0
3,914,137	+				+0.1
3,914,137	+				-1.4
3,914,137	+				+1.8
3,914,137	+				+0.7
3,914,137	+				+1.9
3,914,137	+				-0.6
3,914,137	+				+0.3
3,914,137	+				-0.9
3,914,137	+				-0.7
3,914,137	+				-2.2
3,914,137	+				-0.6
3,914,137	+				-0.0
3,914,137	+				+1.7
3,914,137	+				-0.1
3,914,137	+				-0.9
3,914,137	+				+0.5
3,914,137	+				+0.2
3,914,144	+				-2.9
3,914,145	-				-0.5
3,914,145	-				-1.8
3,914,145	-				-1.8
3,914,145	-				-1.1
3,914,145	-				-0.3
3,914,145	-				-0.6
3,914,145	-				-2.4
3,914,145	-				-0.1
3,914,145	-				-0.5
3,914,145	-				+0.1
3,914,145	-				-1.2
3,914,145	-				-0.5
3,914,149	+				-1.0
3,914,149	+				+0.4
3,914,157	-				-0.1
3,914,157	-				-0.3
3,914,157	-				-0.1
3,914,157	-				-1.4
3,914,157	-				-0.4
3,914,157	-				+0.2
3,914,178	-				-0.3
3,914,195	+				-0.2
3,914,208	-				-0.1
3,914,250	+		GFF3875	0.11	+0.7
3,914,256	+		GFF3875	0.12	+0.6
3,914,258	-		GFF3875	0.12	-2.1
3,914,259	-		GFF3875	0.12	-0.9
3,914,259	-		GFF3875	0.12	+2.1
3,914,266	-		GFF3875	0.13	+0.5
3,914,269	-		GFF3875	0.13	-0.9
3,914,269	-		GFF3875	0.13	-0.3
3,914,284	-		GFF3875	0.15	-0.1
3,914,297	-		GFF3875	0.16	-0.2
3,914,314	+		GFF3875	0.18	+0.6
3,914,324	+		GFF3875	0.19	+0.0
3,914,324	+		GFF3875	0.19	-0.7
3,914,324	+		GFF3875	0.19	-0.5
3,914,324	-		GFF3875	0.19	+1.1
3,914,324	-		GFF3875	0.19	-1.6
3,914,332	-		GFF3875	0.20	+0.6
3,914,352	-		GFF3875	0.22	-0.1
3,914,356	-		GFF3875	0.22	+0.8
3,914,363	+		GFF3875	0.23	-0.9
3,914,369	+		GFF3875	0.24	-1.1
3,914,371	-		GFF3875	0.24	-1.1
3,914,389	+		GFF3875	0.26	-0.2
3,914,393	+		GFF3875	0.26	+0.7
3,914,397	-		GFF3875	0.26	+0.3
3,914,397	-		GFF3875	0.26	+0.4
3,914,397	-		GFF3875	0.26	-1.7
3,914,399	+		GFF3875	0.27	-1.4
3,914,408	+		GFF3875	0.28	-0.2
3,914,408	+		GFF3875	0.28	-1.5
3,914,408	+		GFF3875	0.28	+0.2
3,914,413	+		GFF3875	0.28	-0.6
3,914,417	+		GFF3875	0.29	-2.1
3,914,439	+		GFF3875	0.31	-1.0
3,914,447	-		GFF3875	0.32	+0.9
3,914,450	+		GFF3875	0.32	-1.8
3,914,464	+		GFF3875	0.33	-0.8
3,914,477	-		GFF3875	0.35	+0.3
3,914,491	+		GFF3875	0.36	-1.3
3,914,498	+		GFF3875	0.37	+1.8
3,914,498	+		GFF3875	0.37	+0.3
3,914,498	+		GFF3875	0.37	-0.3
3,914,498	+		GFF3875	0.37	-0.1
3,914,503	+		GFF3875	0.37	-2.5
3,914,506	-		GFF3875	0.38	-2.1
3,914,506	-		GFF3875	0.38	+0.2
3,914,506	-		GFF3875	0.38	-0.2
3,914,506	-		GFF3875	0.38	-1.5
3,914,511	-		GFF3875	0.38	-1.8
3,914,511	-		GFF3875	0.38	-0.7
3,914,521	+		GFF3875	0.39	-0.5
3,914,521	-		GFF3875	0.39	-2.7
3,914,522	-		GFF3875	0.39	+0.7
3,914,538	+		GFF3875	0.41	-1.6
3,914,538	+		GFF3875	0.41	+0.7
3,914,538	+		GFF3875	0.41	+0.5
3,914,538	+		GFF3875	0.41	+0.2
3,914,538	+		GFF3875	0.41	-0.2
3,914,538	+		GFF3875	0.41	-0.9
3,914,546	-		GFF3875	0.42	-0.3
3,914,549	+		GFF3875	0.42	+0.1
3,914,549	+		GFF3875	0.42	-0.5
3,914,557	-		GFF3875	0.43	+0.0
3,914,571	+		GFF3875	0.44	-0.8
3,914,613	-		GFF3875	0.49	+1.4
3,914,613	-		GFF3875	0.49	-2.9
3,914,613	-		GFF3875	0.49	-1.2
3,914,618	-		GFF3875	0.49	-0.4
3,914,628	+		GFF3875	0.50	-0.4
3,914,644	-		GFF3875	0.52	+0.2
3,914,670	-		GFF3875	0.54	-1.0
3,914,675	+		GFF3875	0.55	-0.3
3,914,681	-		GFF3875	0.56	-0.7
3,914,698	+		GFF3875	0.57	-1.1
3,914,724	+		GFF3875	0.60	+0.9
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3,914,735	+		GFF3875	0.61	-1.3
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3,914,750	+		GFF3875	0.63	-0.5
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3,914,750	+		GFF3875	0.63	-1.1
3,914,750	+		GFF3875	0.63	-1.0
3,914,750	+		GFF3875	0.63	-0.5
3,914,750	+		GFF3875	0.63	+0.6
3,914,750	+		GFF3875	0.63	-2.8
3,914,753	-		GFF3875	0.63	-0.5
3,914,755	+		GFF3875	0.63	-0.4
3,914,758	-		GFF3875	0.63	-0.4
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3,914,758	-		GFF3875	0.63	+1.2
3,914,758	-		GFF3875	0.63	+0.1
3,914,758	-		GFF3875	0.63	-0.6
3,914,758	-		GFF3875	0.63	+0.6
3,914,760	+		GFF3875	0.64	-0.4
3,914,760	+		GFF3875	0.64	-2.3
3,914,760	+		GFF3875	0.64	-1.5
3,914,763	-		GFF3875	0.64	-0.6
3,914,768	-		GFF3875	0.65	-0.8
3,914,768	-		GFF3875	0.65	-0.8
3,914,779	+		GFF3875	0.66	-2.1
3,914,779	+		GFF3875	0.66	-2.5
3,914,779	+		GFF3875	0.66	-1.1
3,914,783	+		GFF3875	0.66	-0.4
3,914,787	-		GFF3875	0.66	+0.2
3,914,787	-		GFF3875	0.66	+0.6
3,914,823	+		GFF3875	0.70	-0.6
3,914,827	+		GFF3875	0.71	-2.7
3,914,827	+		GFF3875	0.71	-0.1
3,914,827	+		GFF3875	0.71	-2.0
3,914,827	+		GFF3875	0.71	-1.1
3,914,827	+		GFF3875	0.71	-2.2
3,914,827	+		GFF3875	0.71	-0.7
3,914,827	+		GFF3875	0.71	-0.1
3,914,827	+		GFF3875	0.71	-0.1
3,914,827	+		GFF3875	0.71	-2.4
3,914,827	+		GFF3875	0.71	-0.6
3,914,827	+		GFF3875	0.71	-0.3
3,914,827	+		GFF3875	0.71	+0.7
3,914,829	+		GFF3875	0.71	+0.0
3,914,829	+		GFF3875	0.71	-1.1
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3,914,835	-		GFF3875	0.71	+0.2
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3,914,835	-		GFF3875	0.71	-1.8
3,914,835	-		GFF3875	0.71	+1.6
3,914,835	-		GFF3875	0.71	-0.8
3,914,837	+		GFF3875	0.72	+1.1
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3,914,845	-		GFF3875	0.72	-1.0
3,914,845	-		GFF3875	0.72	-1.1
3,914,845	-		GFF3875	0.72	-1.5
3,914,873	+		GFF3875	0.75	-0.6
3,914,875	+		GFF3875	0.75	-0.3
3,914,875	+		GFF3875	0.75	-0.2
3,914,875	+		GFF3875	0.75	+0.7
3,914,875	+		GFF3875	0.75	+1.1
3,914,875	+		GFF3875	0.75	-1.3
3,914,881	-		GFF3875	0.76	-1.3
3,914,881	-		GFF3875	0.76	-1.5
3,914,883	-		GFF3875	0.76	-1.3
3,914,883	-		GFF3875	0.76	-0.5
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3,914,883	-		GFF3875	0.76	-1.0
3,914,883	-		GFF3875	0.76	-1.7
3,914,889	-		GFF3875	0.77	+0.5
3,914,896	+		GFF3875	0.78	+1.2
3,914,904	-		GFF3875	0.78	-0.3
3,914,904	-		GFF3875	0.78	+0.3
3,914,915	+		GFF3875	0.80	+0.2
3,914,923	+		GFF3875	0.80	+0.0
3,914,949	+		GFF3875	0.83	+0.3
3,914,975	+		GFF3875	0.86	+1.3
3,915,025	+				-1.7
3,915,025	+				-1.7
3,915,033	-				+0.7
3,915,035	+				-0.7
3,915,056	+				+0.8
3,915,064	-				+1.3
3,915,067	-				-1.4
3,915,113	+				+0.2
3,915,113	+				-0.3
3,915,116	-				-1.2
3,915,119	+				-0.5
3,915,121	-				+0.2
3,915,127	-				-0.7
3,915,128	-				+0.1
3,915,130	+				+0.6
3,915,166	+				-0.3