Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF382 and GFF383 are separated by 10 nucleotides GFF383 and GFF384 are separated by 68 nucleotides GFF384 and GFF385 are separated by 431 nucleotides GFF385 and GFF386 are separated by 117 nucleotides
GFF382 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 372,719 to 374,413
GFF382
GFF383 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 374,424 to 375,041
GFF383
GFF384 - Chromosomal replication initiator protein DnaA, at 375,110 to 376,528
GFF384
GFF385 - SSU ribosomal protein S20p, at 376,960 to 377,223
GFF385
GFF386 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 377,341 to 378,153
GFF386
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.110 kb on + strand, within GFF382 at 374.111 kb on - strand, within GFF382 at 374.111 kb on - strand, within GFF382 at 374.111 kb on - strand, within GFF382 at 374.116 kb on - strand, within GFF382 at 374.143 kb on + strand, within GFF382 at 374.143 kb on + strand, within GFF382 at 374.143 kb on + strand, within GFF382 at 374.151 kb on - strand, within GFF382 at 374.151 kb on - strand, within GFF382 at 374.165 kb on + strand, within GFF382 at 374.174 kb on + strand, within GFF382 at 374.184 kb on + strand, within GFF382 at 374.187 kb on - strand, within GFF382 at 374.191 kb on + strand, within GFF382 at 374.192 kb on - strand, within GFF382 at 374.192 kb on - strand, within GFF382 at 374.225 kb on + strand, within GFF382 at 374.238 kb on + strand, within GFF382 at 374.268 kb on - strand at 374.276 kb on + strand at 374.282 kb on + strand at 374.286 kb on - strand at 374.296 kb on + strand at 374.301 kb on + strand at 374.309 kb on - strand at 374.309 kb on - strand at 374.311 kb on + strand at 374.311 kb on + strand at 374.311 kb on + strand at 374.311 kb on + strand at 374.319 kb on + strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.319 kb on - strand at 374.362 kb on - strand at 374.382 kb on + strand at 374.383 kb on + strand at 374.390 kb on - strand at 374.390 kb on - strand at 374.391 kb on + strand at 374.401 kb on + strand at 374.412 kb on + strand at 374.415 kb on - strand at 374.422 kb on + strand at 374.422 kb on + strand at 374.422 kb on + strand at 374.427 kb on + strand at 374.430 kb on - strand at 374.430 kb on - strand at 374.430 kb on - strand at 374.435 kb on - strand at 374.449 kb on + strand at 374.451 kb on - strand at 374.451 kb on - strand at 374.462 kb on + strand at 374.469 kb on + strand at 374.474 kb on + strand at 374.525 kb on - strand, within GFF383 at 374.525 kb on - strand, within GFF383 at 374.546 kb on - strand, within GFF383 at 374.559 kb on + strand, within GFF383 at 374.573 kb on + strand, within GFF383 at 374.574 kb on + strand, within GFF383 at 374.582 kb on - strand, within GFF383 at 374.582 kb on - strand, within GFF383 at 374.628 kb on - strand, within GFF383 at 374.628 kb on - strand, within GFF383 at 374.643 kb on - strand, within GFF383 at 374.645 kb on - strand, within GFF383 at 374.653 kb on - strand, within GFF383 at 374.658 kb on + strand, within GFF383 at 374.658 kb on + strand, within GFF383 at 374.658 kb on + strand, within GFF383 at 374.658 kb on + strand, within GFF383 at 374.661 kb on - strand, within GFF383 at 374.666 kb on - strand, within GFF383 at 374.666 kb on - strand, within GFF383 at 374.666 kb on - strand, within GFF383 at 374.679 kb on + strand, within GFF383 at 374.693 kb on + strand, within GFF383 at 374.693 kb on + strand, within GFF383 at 374.700 kb on + strand, within GFF383 at 374.700 kb on + strand, within GFF383 at 374.701 kb on - strand, within GFF383 at 374.701 kb on - strand, within GFF383 at 374.701 kb on - strand, within GFF383 at 374.701 kb on - strand, within GFF383 at 374.701 kb on - strand, within GFF383 at 374.705 kb on + strand, within GFF383 at 374.708 kb on - strand, within GFF383 at 374.755 kb on + strand, within GFF383 at 374.759 kb on - strand, within GFF383 at 374.767 kb on + strand, within GFF383 at 374.777 kb on + strand, within GFF383 at 374.790 kb on + strand, within GFF383 at 374.792 kb on - strand, within GFF383 at 374.792 kb on - strand, within GFF383 at 374.809 kb on + strand, within GFF383 at 374.811 kb on + strand, within GFF383 at 374.817 kb on - strand, within GFF383 at 374.817 kb on - strand, within GFF383 at 374.819 kb on - strand, within GFF383 at 374.819 kb on - strand, within GFF383 at 374.834 kb on - strand, within GFF383 at 374.845 kb on + strand, within GFF383 at 374.845 kb on + strand, within GFF383 at 374.848 kb on - strand, within GFF383 at 374.853 kb on - strand, within GFF383 at 374.887 kb on + strand, within GFF383 at 374.902 kb on - strand, within GFF383 at 374.969 kb on + strand, within GFF383 at 374.971 kb on + strand, within GFF383 at 374.971 kb on + strand, within GFF383 at 374.971 kb on + strand, within GFF383 at 374.977 kb on - strand, within GFF383 at 375.000 kb on + strand at 375.015 kb on + strand at 375.018 kb on + strand at 375.023 kb on + strand at 375.023 kb on + strand at 375.023 kb on + strand at 375.026 kb on - strand at 375.030 kb on + strand at 375.031 kb on - strand at 375.031 kb on - strand at 375.031 kb on - strand at 375.031 kb on - strand at 375.039 kb on - strand at 375.045 kb on + strand at 375.071 kb on - strand at 375.086 kb on - strand at 375.090 kb on + strand at 375.096 kb on + strand at 375.098 kb on - strand at 375.114 kb on - strand at 375.114 kb on - strand at 375.114 kb on - strand at 376.547 kb on - strand at 376.594 kb on - strand at 376.693 kb on - strand at 376.777 kb on + strand at 376.959 kb on - strand at 376.959 kb on - strand at 376.965 kb on - strand at 376.965 kb on - strand at 377.362 kb on + strand at 377.377 kb on + strand at 377.377 kb on + strand at 377.385 kb on - strand at 377.385 kb on - strand at 377.392 kb on + strand at 377.392 kb on + strand at 377.392 kb on + strand at 377.400 kb on - strand at 377.400 kb on - strand at 377.400 kb on - strand at 377.414 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.422 kb on - strand at 377.427 kb on - strand, within GFF386 at 377.427 kb on - strand, within GFF386 at 377.427 kb on - strand, within GFF386 at 377.434 kb on + strand, within GFF386 at 377.434 kb on + strand, within GFF386 at 377.442 kb on - strand, within GFF386 at 377.442 kb on - strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.517 kb on - strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 374,110 + GFF382 0.82 +0.4 374,111 - GFF382 0.82 +0.9 374,111 - GFF382 0.82 -1.3 374,111 - GFF382 0.82 -0.6 374,116 - GFF382 0.82 -0.5 374,143 + GFF382 0.84 -0.4 374,143 + GFF382 0.84 -1.4 374,143 + GFF382 0.84 -0.9 374,151 - GFF382 0.84 +0.7 374,151 - GFF382 0.84 -0.1 374,165 + GFF382 0.85 +0.6 374,174 + GFF382 0.86 -0.4 374,184 + GFF382 0.86 -2.2 374,187 - GFF382 0.87 +0.6 374,191 + GFF382 0.87 -1.3 374,192 - GFF382 0.87 -1.4 374,192 - GFF382 0.87 +0.7 374,225 + GFF382 0.89 -0.4 374,238 + GFF382 0.90 +0.6 374,268 - +0.4 374,276 + -0.8 374,282 + -1.7 374,286 - +0.5 374,296 + +0.1 374,301 + +1.5 374,309 - +0.8 374,309 - -1.9 374,311 + +0.6 374,311 + +1.1 374,311 + -0.1 374,311 + +0.3 374,319 + -0.4 374,319 - -1.5 374,319 - -0.3 374,319 - +0.9 374,319 - -1.4 374,319 - +0.3 374,362 - +0.7 374,382 + -0.1 374,383 + +0.8 374,390 - -1.8 374,390 - -1.8 374,391 + -1.9 374,401 + +0.1 374,412 + -0.9 374,415 - -0.1 374,422 + -0.7 374,422 + +0.7 374,422 + +0.1 374,427 + +0.4 374,430 - -0.1 374,430 - -0.3 374,430 - +0.1 374,435 - -2.2 374,449 + -2.4 374,451 - -0.2 374,451 - -1.5 374,462 + -0.5 374,469 + -0.2 374,474 + -1.1 374,525 - GFF383 0.16 +0.5 374,525 - GFF383 0.16 -1.6 374,546 - GFF383 0.20 -1.3 374,559 + GFF383 0.22 -0.3 374,573 + GFF383 0.24 +1.6 374,574 + GFF383 0.24 -0.9 374,582 - GFF383 0.26 +0.2 374,582 - GFF383 0.26 +1.0 374,628 - GFF383 0.33 -0.5 374,628 - GFF383 0.33 -2.2 374,643 - GFF383 0.35 -0.8 374,645 - GFF383 0.36 +0.9 374,653 - GFF383 0.37 -0.2 374,658 + GFF383 0.38 -0.5 374,658 + GFF383 0.38 -1.3 374,658 + GFF383 0.38 +0.2 374,658 + GFF383 0.38 -0.5 374,661 - GFF383 0.38 +0.5 374,666 - GFF383 0.39 -0.4 374,666 - GFF383 0.39 +0.9 374,666 - GFF383 0.39 -0.1 374,679 + GFF383 0.41 -1.4 374,693 + GFF383 0.44 -1.2 374,693 + GFF383 0.44 +1.0 374,700 + GFF383 0.45 -1.9 374,700 + GFF383 0.45 +0.4 374,701 - GFF383 0.45 +0.1 374,701 - GFF383 0.45 -0.9 374,701 - GFF383 0.45 +0.5 374,701 - GFF383 0.45 -1.8 374,701 - GFF383 0.45 -1.2 374,705 + GFF383 0.45 -1.4 374,708 - GFF383 0.46 -0.7 374,755 + GFF383 0.54 -0.4 374,759 - GFF383 0.54 -0.3 374,767 + GFF383 0.56 -1.7 374,777 + GFF383 0.57 +0.3 374,790 + GFF383 0.59 -0.6 374,792 - GFF383 0.60 -0.3 374,792 - GFF383 0.60 +0.7 374,809 + GFF383 0.62 -1.0 374,811 + GFF383 0.63 -1.1 374,817 - GFF383 0.64 -0.6 374,817 - GFF383 0.64 -0.9 374,819 - GFF383 0.64 +0.4 374,819 - GFF383 0.64 +0.3 374,834 - GFF383 0.66 +0.1 374,845 + GFF383 0.68 -0.0 374,845 + GFF383 0.68 +0.4 374,848 - GFF383 0.69 -0.6 374,853 - GFF383 0.69 -1.0 374,887 + GFF383 0.75 -1.7 374,902 - GFF383 0.77 -2.9 374,969 + GFF383 0.88 -0.2 374,971 + GFF383 0.89 +1.0 374,971 + GFF383 0.89 +0.1 374,971 + GFF383 0.89 -0.9 374,977 - GFF383 0.89 -2.7 375,000 + +0.6 375,015 + +1.4 375,018 + +0.3 375,023 + -0.2 375,023 + -0.1 375,023 + +0.1 375,026 - +1.1 375,030 + +1.6 375,031 - +0.3 375,031 - -0.3 375,031 - -0.9 375,031 - -0.2 375,039 - +0.3 375,045 + +0.7 375,071 - +1.5 375,086 - -1.1 375,090 + -0.6 375,096 + -1.2 375,098 - +1.2 375,114 - -2.2 375,114 - +0.5 375,114 - -1.3 376,547 - +0.2 376,594 - +1.0 376,693 - -0.3 376,777 + +0.6 376,959 - +0.3 376,959 - -0.9 376,965 - +0.1 376,965 - +0.1 377,362 + -1.1 377,377 + +0.1 377,377 + +0.1 377,385 - -0.9 377,385 - -0.3 377,392 + +0.4 377,392 + -0.2 377,392 + +0.7 377,400 - -0.0 377,400 - -0.6 377,400 - -2.2 377,414 + +0.1 377,419 + -0.2 377,419 + +0.7 377,419 + -0.4 377,422 - -1.0 377,427 - GFF386 0.11 +0.4 377,427 - GFF386 0.11 -0.5 377,427 - GFF386 0.11 +0.9 377,434 + GFF386 0.11 -0.7 377,434 + GFF386 0.11 +0.7 377,442 - GFF386 0.12 +0.3 377,442 - GFF386 0.12 -0.1 377,499 + GFF386 0.19 -0.3 377,499 + GFF386 0.19 -0.8 377,499 + GFF386 0.19 -2.0 377,499 + GFF386 0.19 -0.1 377,499 + GFF386 0.19 +1.0 377,499 + GFF386 0.19 -1.3 377,499 + GFF386 0.19 -0.9 377,499 + GFF386 0.19 +0.8 377,499 + GFF386 0.19 -1.9 377,499 + GFF386 0.19 -0.2 377,499 + GFF386 0.19 -0.3 377,499 + GFF386 0.19 +0.2 377,499 + GFF386 0.19 -0.5 377,499 + GFF386 0.19 -0.6 377,499 + GFF386 0.19 -1.3 377,499 + GFF386 0.19 -0.4 377,499 + GFF386 0.19 -0.2 377,507 - GFF386 0.20 -1.7 377,507 - GFF386 0.20 -2.2 377,507 - GFF386 0.20 +0.1 377,507 - GFF386 0.20 -0.4 377,507 - GFF386 0.20 +0.2 377,507 - GFF386 0.20 -1.2 377,507 - GFF386 0.20 -0.3 377,507 - GFF386 0.20 -0.2 377,507 - GFF386 0.20 -1.4 377,507 - GFF386 0.20 +0.4 377,507 - GFF386 0.20 +0.5 377,507 - GFF386 0.20 -0.5 377,507 - GFF386 0.20 -1.0 377,507 - GFF386 0.20 +0.6 377,507 - GFF386 0.20 +2.1 377,507 - GFF386 0.20 -1.3 377,507 - GFF386 0.20 -0.6 377,507 - GFF386 0.20 -0.1 377,507 - GFF386 0.20 -0.6 377,517 - GFF386 0.22 -0.1 377,527 + GFF386 0.23 +1.1 377,527 + GFF386 0.23 +0.8 377,527 + GFF386 0.23 +1.4 377,527 + GFF386 0.23 -1.5 377,527 + GFF386 0.23 -0.8 377,527 + GFF386 0.23 -0.2 377,527 + GFF386 0.23 -1.3 377,527 + GFF386 0.23 +0.1 377,527 + GFF386 0.23 +1.4 377,527 + GFF386 0.23 -0.3
Or see this region's nucleotide sequence