Strain Fitness in Sphingobium sp. HT1-2 around GFF3827

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,866,013	+		GFF3825	0.74	-1.5
3,866,013	+		GFF3825	0.74	+0.5
3,866,022	+		GFF3825	0.74	-0.6
3,866,032	-		GFF3825	0.75	+0.7
3,866,032	-		GFF3825	0.75	+0.7
3,866,049	-		GFF3825	0.76	-1.4
3,866,074	+		GFF3825	0.78	-0.4
3,866,077	-		GFF3825	0.78	-0.3
3,866,091	-		GFF3825	0.79	-0.5
3,866,104	+		GFF3825	0.80	+0.3
3,866,104	+		GFF3825	0.80	-0.8
3,866,112	-		GFF3825	0.80	-0.6
3,866,112	-		GFF3825	0.80	+1.1
3,866,132	-		GFF3825	0.81	+0.0
3,866,145	+		GFF3825	0.82	-1.0
3,866,154	-		GFF3825	0.83	+0.5
3,866,154	-		GFF3825	0.83	+0.2
3,866,154	-		GFF3825	0.83	-0.1
3,866,161	+		GFF3825	0.83	-0.5
3,866,169	-		GFF3825	0.84	+0.1
3,866,180	+		GFF3825	0.84	-0.9
3,866,182	+		GFF3825	0.84	-0.5
3,866,182	+		GFF3825	0.84	-0.4
3,866,182	+		GFF3825	0.84	-0.8
3,866,182	+		GFF3825	0.84	-0.2
3,866,182	+		GFF3825	0.84	-1.2
3,866,182	+		GFF3825	0.84	+0.1
3,866,182	+		GFF3825	0.84	-2.2
3,866,182	+		GFF3825	0.84	+0.6
3,866,182	+		GFF3825	0.84	-0.4
3,866,182	+		GFF3825	0.84	+0.8
3,866,182	+		GFF3825	0.84	-1.4
3,866,185	-		GFF3825	0.85	-1.4
3,866,188	-		GFF3825	0.85	-0.1
3,866,190	-		GFF3825	0.85	+0.5
3,866,190	-		GFF3825	0.85	+0.3
3,866,190	-		GFF3825	0.85	-1.1
3,866,190	-		GFF3825	0.85	-1.2
3,866,190	-		GFF3825	0.85	-1.5
3,866,190	-		GFF3825	0.85	+0.7
3,866,190	-		GFF3825	0.85	+0.3
3,866,190	-		GFF3825	0.85	-0.6
3,866,190	-		GFF3825	0.85	+0.1
3,866,190	-		GFF3825	0.85	-1.7
3,866,190	-		GFF3825	0.85	+0.7
3,866,203	-		GFF3825	0.86	-0.9
3,866,204	+		GFF3825	0.86	-0.4
3,866,204	+		GFF3825	0.86	-1.2
3,866,204	+		GFF3825	0.86	+0.6
3,866,204	+		GFF3825	0.86	+1.0
3,866,204	+		GFF3825	0.86	+1.3
3,866,204	+		GFF3825	0.86	-1.8
3,866,204	+		GFF3825	0.86	+1.4
3,866,204	+		GFF3825	0.86	+0.1
3,866,204	+		GFF3825	0.86	+0.3
3,866,204	+		GFF3825	0.86	-0.4
3,866,204	+		GFF3825	0.86	-0.1
3,866,204	+		GFF3825	0.86	-1.5
3,866,204	+		GFF3825	0.86	-0.5
3,866,204	+		GFF3825	0.86	-0.5
3,866,204	+		GFF3825	0.86	-1.7
3,866,212	-		GFF3825	0.86	+0.2
3,866,212	-		GFF3825	0.86	-2.4
3,866,212	-		GFF3825	0.86	+0.3
3,866,212	-		GFF3825	0.86	-0.8
3,866,212	-		GFF3825	0.86	-2.1
3,866,212	-		GFF3825	0.86	-0.5
3,866,212	-		GFF3825	0.86	-0.4
3,866,212	-		GFF3825	0.86	+0.0
3,866,212	-		GFF3825	0.86	+0.4
3,866,212	-		GFF3825	0.86	+0.4
3,866,214	+		GFF3825	0.86	+0.6
3,866,222	-		GFF3825	0.87	-0.2
3,866,263	+		GFF3825	0.89	-0.1
3,866,280	+				+0.9
3,866,286	+				+0.0
3,866,294	-				+0.6
3,866,320	+				-0.7
3,866,320	+				+0.3
3,866,330	-				-0.2
3,866,348	+				-2.4
3,866,355	-				+0.9
3,866,355	-				+0.5
3,866,356	-				-1.3
3,866,377	+				+0.1
3,866,390	+				-1.3
3,866,399	+				-0.1
3,866,407	-				-0.5
3,866,409	+				+0.4
3,866,423	-				+0.0
3,866,425	+				-0.9
3,866,434	-				+0.5
3,866,458	+				+0.1
3,866,459	-				+0.5
3,866,466	-				+0.0
3,866,466	-				-0.7
3,866,471	-				-1.3
3,866,518	+				-1.4
3,866,518	+				+0.2
3,866,518	+				+1.0
3,866,518	+				-0.2
3,866,518	+				-1.9
3,866,518	+				-1.0
3,866,526	-				+0.7
3,866,526	-				+0.2
3,866,526	-				-0.2
3,866,526	-				-0.2
3,866,526	-				-2.5
3,866,526	-				-0.7
3,866,526	-				-0.6
3,866,526	-				-0.8
3,866,526	-				+0.2
3,866,526	-				-0.8
3,866,526	-				+0.0
3,866,528	-				-0.9
3,866,528	-				-1.5
3,866,530	+				-1.2
3,866,535	+				+0.3
3,866,535	+				-0.2
3,866,536	+				+1.1
3,866,575	+				-0.1
3,866,594	+		GFF3826	0.12	-0.7
3,866,594	+		GFF3826	0.12	-1.1
3,866,594	+		GFF3826	0.12	-0.5
3,866,594	+		GFF3826	0.12	-2.0
3,866,602	-		GFF3826	0.14	+0.5
3,866,602	-		GFF3826	0.14	-1.5
3,866,602	-		GFF3826	0.14	-2.1
3,866,602	-		GFF3826	0.14	-1.6
3,866,621	+		GFF3826	0.20	-0.4
3,866,627	+		GFF3826	0.22	-0.4
3,866,635	-		GFF3826	0.25	-1.6
3,866,635	-		GFF3826	0.25	+0.8
3,866,638	+		GFF3826	0.25	-0.6
3,866,645	-		GFF3826	0.28	-1.7
3,866,680	+		GFF3826	0.39	-2.5
3,866,680	+		GFF3826	0.39	+0.5
3,866,688	-		GFF3826	0.41	-0.4
3,866,688	-		GFF3826	0.41	+0.3
3,866,701	-		GFF3826	0.45	-0.6
3,866,703	+		GFF3826	0.46	+1.2
3,866,703	+		GFF3826	0.46	-1.0
3,866,711	-		GFF3826	0.48	+0.4
3,866,716	+		GFF3826	0.50	-0.9
3,866,727	-		GFF3826	0.53	-1.5
3,866,743	+		GFF3826	0.58	-1.8
3,866,795	-		GFF3826	0.75	+0.4
3,866,826	-		GFF3826	0.85	+0.0
3,866,847	-				-0.7
3,866,849	-				-1.9
3,866,853	+				-0.2
3,866,853	+				-1.3
3,866,853	+				-0.2
3,866,853	+				+1.7
3,866,861	-				-0.5
3,866,861	-				+1.2
3,866,900	+				-0.2
3,866,916	+				-1.2
3,867,856	+				-0.4
3,867,856	+				-1.4
3,867,856	+				-0.5
3,867,864	-				-0.2
3,867,875	+				-0.1
3,867,876	-				-1.2
3,867,877	+				-0.5
3,867,893	-				-1.0
3,867,894	+				-2.0
3,867,894	-				-0.7
3,867,936	+				-1.1
3,867,944	-				-1.0
3,867,957	+				+0.3
3,867,965	-				-0.2
3,867,967	+				-0.8
3,867,967	+				+1.2
3,867,978	-				-0.1
3,867,995	+				-0.4
3,867,995	+				+0.3
3,868,001	+				-0.4
3,868,014	-				+0.3
3,868,017	-				+0.6
3,868,034	-				-0.2
3,868,034	-				-2.0
3,868,034	-				+0.0
3,868,034	-				+0.9
3,868,054	+				+0.2
3,868,054	+				+0.5
3,868,064	-				+0.8
3,868,082	+				-0.2
3,868,088	-				-1.2
3,868,113	+				-2.5
3,868,113	+				-1.4
3,868,113	+				-2.3
3,868,113	+				+0.1
3,868,113	+				+0.3
3,868,117	+				-2.2
3,868,118	+				-0.4
3,868,121	-				-0.1
3,868,121	-				+0.4
3,868,121	-				-0.3
3,868,121	-				-0.2
3,868,121	-				+1.2
3,868,121	-				-0.9
3,868,121	-				-1.2
3,868,121	-				-0.4
3,868,136	-				-0.5
3,868,141	-				+0.9
3,868,143	+				-0.1
3,868,143	+				-2.2
3,868,143	-				+0.2
3,868,151	-				+0.8
3,868,151	-				-0.2
3,868,170	+				-0.1
3,868,170	+				+0.5
3,868,176	+				-0.1
3,868,176	+				+0.5
3,868,176	+				-0.7
3,868,176	+				-0.5
3,868,176	+				-0.3
3,868,178	-				-0.1
3,868,184	-				-1.2
3,868,184	-				-0.4
3,868,184	-				-1.3
3,868,184	-				+0.2
3,868,184	-				+0.2
3,868,191	+				-1.3
3,868,199	-				+0.4
3,868,201	+				-0.5
3,868,201	+				-1.1
3,868,209	-				-0.7
3,868,234	+				+0.8
3,868,239	+				+0.3
3,868,242	-				+0.2
3,868,242	-				-1.1
3,868,281	+				-0.2
3,868,286	+				-2.1
3,868,286	+				-1.3
3,868,286	+				-1.2
3,868,286	+				-1.0
3,868,289	-				-1.7
3,868,289	-				+0.5
3,868,291	+		GFF3828	0.10	+0.4
3,868,291	+		GFF3828	0.10	-0.2
3,868,294	-		GFF3828	0.10	-0.4
3,868,294	-		GFF3828	0.10	-0.5
3,868,294	-		GFF3828	0.10	-0.6
3,868,305	+		GFF3828	0.11	-0.1
3,868,306	+		GFF3828	0.11	+0.8
3,868,317	+		GFF3828	0.11	-1.3
3,868,319	-		GFF3828	0.12	-0.7
3,868,322	+		GFF3828	0.12	+1.3
3,868,327	+		GFF3828	0.12	+1.3
3,868,327	+		GFF3828	0.12	+0.1
3,868,330	-		GFF3828	0.12	-1.5
3,868,330	-		GFF3828	0.12	-0.6
3,868,331	-		GFF3828	0.12	+0.5
3,868,335	-		GFF3828	0.12	-0.4
3,868,339	+		GFF3828	0.13	-1.1
3,868,340	-		GFF3828	0.13	+0.6
3,868,340	-		GFF3828	0.13	-2.0
3,868,364	+		GFF3828	0.14	-1.5
3,868,364	+		GFF3828	0.14	-0.2
3,868,364	+		GFF3828	0.14	-0.8
3,868,364	+		GFF3828	0.14	+0.1
3,868,372	-		GFF3828	0.14	-0.8
3,868,372	-		GFF3828	0.14	-0.6
3,868,372	-		GFF3828	0.14	+1.0
3,868,386	+		GFF3828	0.15	+0.4
3,868,386	+		GFF3828	0.15	-1.0
3,868,394	-		GFF3828	0.16	+0.7
3,868,404	-		GFF3828	0.16	-1.2
3,868,418	-		GFF3828	0.17	+1.3
3,868,447	+		GFF3828	0.19	+0.9
3,868,447	+		GFF3828	0.19	-0.8
3,868,455	-		GFF3828	0.19	-2.0
3,868,455	-		GFF3828	0.19	+0.0
3,868,458	-		GFF3828	0.19	-1.1
3,868,460	-		GFF3828	0.19	+0.5
3,868,500	+		GFF3828	0.21	-1.9
3,868,505	-		GFF3828	0.22	-1.0
3,868,510	+		GFF3828	0.22	-1.1
3,868,510	+		GFF3828	0.22	-1.4
3,868,510	+		GFF3828	0.22	+0.2
3,868,515	-		GFF3828	0.22	-1.3
3,868,524	+		GFF3828	0.23	-0.6
3,868,530	-		GFF3828	0.23	+0.8
3,868,531	+		GFF3828	0.23	-1.6
3,868,554	+		GFF3828	0.24	-0.7
3,868,558	-		GFF3828	0.25	-0.8
3,868,558	-		GFF3828	0.25	+0.3
3,868,568	-		GFF3828	0.25	+0.5
3,868,568	-		GFF3828	0.25	-0.2
3,868,570	+		GFF3828	0.25	-1.2
3,868,570	+		GFF3828	0.25	-2.4
3,868,573	-		GFF3828	0.25	-1.2
3,868,576	+		GFF3828	0.26	-1.5
3,868,584	-		GFF3828	0.26	-0.2
3,868,597	+		GFF3828	0.27	-0.5
3,868,605	-		GFF3828	0.27	-0.2
3,868,616	+		GFF3828	0.28	+0.0
3,868,621	+		GFF3828	0.28	+0.5
3,868,621	+		GFF3828	0.28	+0.3
3,868,623	+		GFF3828	0.28	-1.5
3,868,629	-		GFF3828	0.28	-0.5
3,868,632	+		GFF3828	0.29	+1.0
3,868,639	+		GFF3828	0.29	+0.7
3,868,703	+		GFF3828	0.33	+0.2
3,868,703	+		GFF3828	0.33	+0.2
3,868,711	-		GFF3828	0.33	+0.2
3,868,730	+		GFF3828	0.34	+0.4
3,868,731	+		GFF3828	0.34	-0.5
3,868,746	+		GFF3828	0.35	-0.1
3,868,754	-		GFF3828	0.35	-0.2
3,868,758	+		GFF3828	0.36	+0.4
3,868,774	+		GFF3828	0.36	-0.5
3,868,795	+		GFF3828	0.38	-0.9
3,868,805	+		GFF3828	0.38	-1.5
3,868,811	+		GFF3828	0.38	-2.9
3,868,814	-		GFF3828	0.39	+0.3
3,868,814	-		GFF3828	0.39	-0.9
3,868,819	-		GFF3828	0.39	-1.8
3,868,819	-		GFF3828	0.39	+0.1
3,868,819	-		GFF3828	0.39	-0.8
3,868,843	+		GFF3828	0.40	-0.4
3,868,854	-		GFF3828	0.41	-0.2
3,868,856	-		GFF3828	0.41	-0.7