Strain Fitness in Sphingobium sp. HT1-2 around GFF3792

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,833,458	-		GFF3791	0.71	+0.9
3,833,492	-		GFF3791	0.72	-0.5
3,833,506	-		GFF3791	0.73	+0.1
3,833,511	-		GFF3791	0.73	-0.7
3,833,575	+		GFF3791	0.76	-1.4
3,833,575	+		GFF3791	0.76	+0.9
3,833,581	+		GFF3791	0.76	-0.6
3,833,583	-		GFF3791	0.76	-0.5
3,833,583	-		GFF3791	0.76	-0.8
3,833,598	+		GFF3791	0.77	+1.2
3,833,598	+		GFF3791	0.77	-1.0
3,833,598	+		GFF3791	0.77	-0.2
3,833,598	+		GFF3791	0.77	-1.1
3,833,621	+		GFF3791	0.77	-1.4
3,833,629	-		GFF3791	0.78	-0.5
3,833,644	+		GFF3791	0.78	-0.1
3,833,652	-		GFF3791	0.79	+0.6
3,833,652	-		GFF3791	0.79	-1.3
3,833,681	+		GFF3791	0.80	+1.3
3,833,709	+		GFF3791	0.81	-1.9
3,833,711	+		GFF3791	0.81	-1.1
3,833,717	-		GFF3791	0.81	+0.9
3,833,732	+		GFF3791	0.82	-1.8
3,833,735	+		GFF3791	0.82	-2.6
3,833,740	-		GFF3791	0.82	-0.8
3,833,743	-		GFF3791	0.82	-0.4
3,833,761	-		GFF3791	0.83	+1.1
3,833,774	-		GFF3791	0.83	+0.1
3,833,776	+		GFF3791	0.83	+1.2
3,833,782	+		GFF3791	0.84	-0.6
3,833,784	-		GFF3791	0.84	+0.1
3,833,786	+		GFF3791	0.84	-0.1
3,833,793	+		GFF3791	0.84	-1.1
3,833,794	-		GFF3791	0.84	-0.8
3,833,799	+		GFF3791	0.84	+0.5
3,833,799	+		GFF3791	0.84	-1.3
3,833,799	+		GFF3791	0.84	-1.5
3,833,807	-		GFF3791	0.85	+0.3
3,833,807	-		GFF3791	0.85	+1.3
3,833,809	+		GFF3791	0.85	-0.7
3,833,814	+		GFF3791	0.85	-0.9
3,833,821	+		GFF3791	0.85	-0.8
3,833,821	+		GFF3791	0.85	+0.4
3,833,829	-		GFF3791	0.86	-1.2
3,833,855	-		GFF3791	0.87	-0.4
3,833,859	+		GFF3791	0.87	+1.4
3,833,881	+		GFF3791	0.88	-0.1
3,833,881	+		GFF3791	0.88	-0.2
3,833,904	-		GFF3791	0.88	+0.9
3,833,913	+		GFF3791	0.89	-0.6
3,833,930	+		GFF3791	0.89	-0.7
3,833,931	-		GFF3791	0.90	-0.2
3,833,936	+		GFF3791	0.90	-1.8
3,833,936	+		GFF3791	0.90	-0.6
3,833,938	-		GFF3791	0.90	+0.5
3,833,951	+				-1.8
3,833,959	+				+0.2
3,833,959	-				-1.1
3,833,959	-				-0.2
3,833,959	-				+0.6
3,833,961	+				-2.0
3,833,966	+				-1.0
3,833,966	+				+0.4
3,833,967	+				-0.1
3,833,969	-				-0.3
3,833,979	-				-0.1
3,833,982	+				-2.1
3,833,985	-				-0.1
3,833,997	+				+0.4
3,834,002	+				+0.8
3,834,002	+				-0.8
3,834,002	+				+0.6
3,834,015	-				+0.9
3,834,018	+				+1.6
3,834,018	+				-0.8
3,834,023	+				+0.9
3,834,026	-				+0.3
3,834,026	-				-0.5
3,834,031	-				+0.4
3,834,243	+				-2.6
3,834,459	+				-0.3
3,834,467	-				+1.9
3,834,492	+				+0.1
3,834,495	-				-2.1
3,834,495	-				+0.2
3,834,498	+				+0.2
3,834,511	-				+1.3
3,834,531	+		GFF3792	0.13	-0.2
3,834,532	-		GFF3792	0.13	-1.1
3,834,532	-		GFF3792	0.13	-0.8
3,834,539	-		GFF3792	0.14	-0.1
3,834,539	-		GFF3792	0.14	-1.0
3,834,539	-		GFF3792	0.14	-1.6
3,834,551	-		GFF3792	0.16	+1.3
3,834,553	+		GFF3792	0.16	-2.1
3,834,560	+		GFF3792	0.17	-0.9
3,834,560	+		GFF3792	0.17	-1.3
3,834,597	-		GFF3792	0.23	-2.2
3,834,599	+		GFF3792	0.23	+0.9
3,834,604	+		GFF3792	0.24	+0.5
3,834,611	+		GFF3792	0.25	+0.3
3,834,611	+		GFF3792	0.25	+0.4
3,834,618	+		GFF3792	0.26	-1.5
3,834,619	+		GFF3792	0.27	+0.3
3,834,634	+		GFF3792	0.29	-0.2
3,834,641	-		GFF3792	0.30	+0.2
3,834,653	-		GFF3792	0.32	+0.3
3,834,653	-		GFF3792	0.32	-1.7
3,834,666	+		GFF3792	0.34	-1.2
3,834,666	+		GFF3792	0.34	-0.9
3,834,666	+		GFF3792	0.34	-1.1
3,834,668	-		GFF3792	0.34	+0.9
3,834,671	+		GFF3792	0.35	-2.3
3,834,671	+		GFF3792	0.35	-0.4
3,834,671	+		GFF3792	0.35	-0.7
3,834,674	-		GFF3792	0.35	+0.9
3,834,679	-		GFF3792	0.36	-0.3
3,834,679	-		GFF3792	0.36	-0.5
3,834,679	-		GFF3792	0.36	+0.9
3,834,679	-		GFF3792	0.36	+0.8
3,834,701	+		GFF3792	0.40	-0.3
3,834,701	+		GFF3792	0.40	+0.7
3,834,718	-		GFF3792	0.42	-0.2
3,834,771	-		GFF3792	0.51	-1.9
3,834,798	-		GFF3792	0.55	-0.5
3,834,800	+		GFF3792	0.56	+0.7
3,834,803	-		GFF3792	0.56	-0.8
3,834,824	+		GFF3792	0.59	-0.3
3,834,824	+		GFF3792	0.59	-0.0
3,834,832	-		GFF3792	0.61	-0.1
3,834,832	-		GFF3792	0.61	-0.5
3,834,840	+		GFF3792	0.62	+1.9
3,834,848	-		GFF3792	0.63	+0.9
3,834,944	+		GFF3792	0.78	+0.7
3,834,964	+		GFF3792	0.82	-0.5
3,834,989	+		GFF3792	0.86	+0.2
3,834,989	+		GFF3792	0.86	+0.3
3,835,007	+		GFF3792	0.89	-0.8
3,835,029	+				+0.7
3,835,051	+				+1.2
3,835,094	-				-1.4
3,835,094	-				+0.2
3,835,097	+				-1.9
3,835,105	-				+0.6
3,835,105	-				-1.6
3,835,105	-				-1.1
3,835,112	+				-0.4
3,835,112	+				+0.9
3,835,152	-				-1.8
3,835,161	-				+0.2
3,835,187	+				-3.3
3,835,207	-				-1.6
3,835,232	+				-0.5
3,835,232	+				-1.2
3,835,232	+				-0.5
3,835,259	+		GFF3793	0.12	-1.2
3,835,272	+		GFF3793	0.13	-1.4
3,835,280	-		GFF3793	0.13	+0.0
3,835,303	-		GFF3793	0.15	-0.5
3,835,321	+		GFF3793	0.16	-2.9
3,835,329	-		GFF3793	0.17	-2.4
3,835,355	-		GFF3793	0.19	-0.9
3,835,363	-		GFF3793	0.19	-1.2
3,835,392	+		GFF3793	0.21	-0.4
3,835,394	+		GFF3793	0.22	-1.1
3,835,394	+		GFF3793	0.22	-1.5
3,835,394	+		GFF3793	0.22	-0.4
3,835,394	+		GFF3793	0.22	-1.8
3,835,394	+		GFF3793	0.22	-1.3
3,835,394	+		GFF3793	0.22	+0.5
3,835,394	+		GFF3793	0.22	-2.3
3,835,394	+		GFF3793	0.22	-1.4
3,835,402	-		GFF3793	0.22	-1.6
3,835,410	-		GFF3793	0.23	-0.9
3,835,458	+		GFF3793	0.26	-1.5
3,835,489	+		GFF3793	0.29	-1.1
3,835,503	+		GFF3793	0.30	+0.2
3,835,513	+		GFF3793	0.30	-0.8
3,835,521	+		GFF3793	0.31	-3.2
3,835,564	-		GFF3793	0.34	-0.6
3,835,691	-		GFF3793	0.43	-0.6
3,835,696	-		GFF3793	0.44	-1.1
3,835,696	-		GFF3793	0.44	-0.6
3,835,731	+		GFF3793	0.46	+0.2
3,835,752	+		GFF3793	0.48	-2.1
3,835,760	-		GFF3793	0.48	-1.6
3,835,761	+		GFF3793	0.48	-1.9
3,835,761	+		GFF3793	0.48	-0.9
3,835,761	+		GFF3793	0.48	-0.3
3,835,761	+		GFF3793	0.48	-2.5
3,835,769	-		GFF3793	0.49	-1.3
3,835,773	+		GFF3793	0.49	-2.6
3,835,815	+		GFF3793	0.52	-2.2
3,835,820	+		GFF3793	0.53	-1.4
3,835,843	-		GFF3793	0.54	-0.7
3,835,869	+		GFF3793	0.56	-0.6
3,835,983	+		GFF3793	0.65	-0.5
3,835,988	-		GFF3793	0.65	-2.3
3,836,006	+		GFF3793	0.66	-3.1
3,836,014	-		GFF3793	0.67	-2.1
3,836,033	+		GFF3793	0.68	-1.9
3,836,038	+		GFF3793	0.69	-1.9
3,836,046	-		GFF3793	0.69	-0.9
3,836,048	+		GFF3793	0.69	-1.2