Strain Fitness in Sphingobium sp. HT1-2 around GFF3778

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,816,875	+		GFF3776	0.39	-1.0
3,816,875	+		GFF3776	0.39	-1.1
3,816,875	+		GFF3776	0.39	-1.9
3,816,883	-		GFF3776	0.40	+0.9
3,816,910	+		GFF3776	0.44	-0.6
3,816,915	+		GFF3776	0.44	+0.2
3,816,915	+		GFF3776	0.44	+0.9
3,816,923	-		GFF3776	0.46	-0.8
3,816,947	+		GFF3776	0.49	-2.0
3,816,955	-		GFF3776	0.50	-1.7
3,816,955	-		GFF3776	0.50	-1.2
3,816,955	-		GFF3776	0.50	-0.2
3,816,955	-		GFF3776	0.50	+0.5
3,816,955	-		GFF3776	0.50	-1.0
3,816,997	+		GFF3776	0.56	+0.0
3,816,997	+		GFF3776	0.56	-0.5
3,817,002	+		GFF3776	0.57	+1.0
3,817,002	+		GFF3776	0.57	-0.5
3,817,002	+		GFF3776	0.57	-1.0
3,817,002	+		GFF3776	0.57	-0.3
3,817,002	+		GFF3776	0.57	-0.0
3,817,002	+		GFF3776	0.57	-0.9
3,817,002	+		GFF3776	0.57	+0.6
3,817,002	+		GFF3776	0.57	-0.4
3,817,002	+		GFF3776	0.57	-0.1
3,817,002	+		GFF3776	0.57	-0.2
3,817,002	+		GFF3776	0.57	-0.4
3,817,002	+		GFF3776	0.57	+0.8
3,817,002	+		GFF3776	0.57	-0.0
3,817,002	+		GFF3776	0.57	-0.1
3,817,002	+		GFF3776	0.57	-0.2
3,817,006	+		GFF3776	0.57	+0.5
3,817,010	-		GFF3776	0.58	-0.2
3,817,010	-		GFF3776	0.58	+0.0
3,817,010	-		GFF3776	0.58	-1.1
3,817,010	-		GFF3776	0.58	-1.2
3,817,010	-		GFF3776	0.58	+0.4
3,817,010	-		GFF3776	0.58	+1.2
3,817,010	-		GFF3776	0.58	-0.8
3,817,010	-		GFF3776	0.58	+1.2
3,817,010	-		GFF3776	0.58	-0.7
3,817,010	-		GFF3776	0.58	-1.8
3,817,011	+		GFF3776	0.58	-0.5
3,817,011	+		GFF3776	0.58	+0.5
3,817,019	-		GFF3776	0.59	-1.8
3,817,064	+		GFF3776	0.65	+0.1
3,817,076	-		GFF3776	0.67	-1.3
3,817,086	-		GFF3776	0.68	+0.4
3,817,095	-		GFF3776	0.70	+0.7
3,817,131	+		GFF3776	0.75	+0.3
3,817,131	+		GFF3776	0.75	+0.3
3,817,138	+		GFF3776	0.76	+0.1
3,817,138	+		GFF3776	0.76	-0.2
3,817,139	+		GFF3776	0.76	-0.2
3,817,139	-		GFF3776	0.76	-0.5
3,817,143	+		GFF3776	0.77	-1.7
3,817,158	+		GFF3776	0.79	-0.1
3,817,166	-		GFF3776	0.80	-0.1
3,817,169	-		GFF3776	0.80	+0.8
3,817,171	-		GFF3776	0.80	+0.2
3,817,192	+		GFF3776	0.83	+0.7
3,817,203	+		GFF3776	0.85	-0.1
3,817,211	-		GFF3776	0.86	-1.6
3,817,211	-		GFF3776	0.86	-1.9
3,817,222	-		GFF3776	0.88	+0.1
3,817,228	+		GFF3776	0.88	-0.6
3,817,236	-		GFF3776	0.90	+0.4
3,817,241	+				+0.5
3,817,270	+				-0.5
3,817,278	-				-2.0
3,817,288	-				-0.3
3,817,317	+				+0.1
3,817,321	-				+0.2
3,817,326	-				-1.1
3,817,336	+				-0.6
3,817,336	+				+1.2
3,817,336	+				-0.3
3,817,336	+				-1.3
3,817,341	+		GFF3777	0.10	+0.6
3,817,344	-		GFF3777	0.11	-2.6
3,817,344	-		GFF3777	0.11	-0.6
3,817,344	-		GFF3777	0.11	-0.4
3,817,344	-		GFF3777	0.11	-0.9
3,817,344	-		GFF3777	0.11	+0.3
3,817,349	-		GFF3777	0.13	-2.1
3,817,349	-		GFF3777	0.13	-0.5
3,817,368	+		GFF3777	0.20	-1.5
3,817,368	-		GFF3777	0.20	-2.2
3,817,395	-		GFF3777	0.29	-0.5
3,817,395	-		GFF3777	0.29	-0.7
3,817,421	+		GFF3777	0.39	-0.2
3,817,423	-		GFF3777	0.39	+0.3
3,817,427	+		GFF3777	0.41	+0.3
3,817,435	-		GFF3777	0.44	+0.3
3,817,444	-		GFF3777	0.47	-1.2
3,817,461	-		GFF3777	0.53	-0.7
3,817,476	-		GFF3777	0.58	+0.4
3,817,477	+		GFF3777	0.59	-1.1
3,817,477	+		GFF3777	0.59	-0.5
3,817,480	-		GFF3777	0.60	-1.2
3,817,485	-		GFF3777	0.61	-2.5
3,817,485	-		GFF3777	0.61	+0.4
3,817,495	+		GFF3777	0.65	+0.1
3,817,495	+		GFF3777	0.65	-0.2
3,817,499	+		GFF3777	0.66	-0.3
3,817,506	-		GFF3777	0.69	-0.3
3,817,527	-		GFF3777	0.76	+0.2
3,817,566	-				+0.2
3,817,592	-				+0.5
3,817,613	-				-0.1
3,817,617	-				-0.4
3,817,630	-				-1.7
3,817,708	-				-0.5
3,817,716	-				+0.9
3,817,753	+				+0.1
3,817,771	-				+0.8
3,817,822	+				-0.6
3,817,822	+				-0.2
3,817,824	+				-1.5
3,817,830	-				-0.5
3,817,830	-				-1.3
3,817,830	-				+0.2
3,817,830	-				-0.1
3,817,830	-				+1.6
3,817,830	-				-1.5
3,817,832	-				+0.7
3,817,832	-				+0.6
3,817,832	-				-0.4
3,817,832	-				-1.0
3,817,832	-				+0.3
3,817,832	-				+0.4
3,817,840	-				-0.6
3,817,861	+				+0.5
3,817,869	-				-3.3
3,817,891	+				+0.8
3,817,891	+				-1.7
3,817,892	+				+0.9
3,817,892	+				+0.2
3,817,892	+				-0.4
3,817,892	+				-1.2
3,817,895	-				-0.7
3,817,900	-				+0.5
3,817,900	-				+1.1
3,817,900	-				-0.2
3,817,958	+				+0.5
3,817,972	+				-0.1
3,818,009	-				+0.1
3,818,057	+				-0.5
3,818,170	-		GFF3778	0.11	-1.7
3,818,296	+		GFF3778	0.15	-0.5
3,818,313	+		GFF3778	0.16	-0.8
3,818,313	+		GFF3778	0.16	-1.8
3,818,318	-		GFF3778	0.16	-0.1
3,818,354	+		GFF3778	0.17	-0.1
3,818,479	+		GFF3778	0.22	+0.1
3,818,482	-		GFF3778	0.22	-0.6
3,818,487	-		GFF3778	0.22	-1.4
3,818,490	+		GFF3778	0.22	-1.2
3,818,518	+		GFF3778	0.23	+0.6
3,818,531	-		GFF3778	0.23	+0.5
3,818,566	-		GFF3778	0.25	-0.2
3,818,638	-		GFF3778	0.27	+0.2
3,818,638	-		GFF3778	0.27	+1.5
3,818,638	-		GFF3778	0.27	+0.2
3,818,646	-		GFF3778	0.28	+0.9
3,818,657	-		GFF3778	0.28	-1.0
3,818,657	-		GFF3778	0.28	-1.6
3,818,694	+		GFF3778	0.29	-1.9
3,818,702	-		GFF3778	0.30	-1.9
3,818,702	-		GFF3778	0.30	+0.2
3,818,704	+		GFF3778	0.30	-0.9
3,818,723	-		GFF3778	0.30	+0.1
3,818,729	-		GFF3778	0.31	+0.6
3,818,759	-		GFF3778	0.32	-1.9
3,818,780	-		GFF3778	0.32	-0.6
3,818,829	+		GFF3778	0.34	+2.2
3,818,907	-		GFF3778	0.37	-0.6
3,818,920	-		GFF3778	0.37	+0.5
3,818,938	-		GFF3778	0.38	+0.7
3,818,944	-		GFF3778	0.38	-1.1
3,818,994	-		GFF3778	0.40	+0.6
3,819,042	-		GFF3778	0.42	-0.4
3,819,046	-		GFF3778	0.42	+0.2
3,819,092	+		GFF3778	0.44	-0.5
3,819,092	-		GFF3778	0.44	-1.4
3,819,162	-		GFF3778	0.46	-0.9
3,819,185	-		GFF3778	0.47	-0.4
3,819,265	-		GFF3778	0.50	+0.0
3,819,270	-		GFF3778	0.50	+0.9
3,819,286	+		GFF3778	0.50	+0.9
3,819,287	+		GFF3778	0.50	+0.5
3,819,340	-		GFF3778	0.52	-1.0
3,819,372	-		GFF3778	0.54	-2.0
3,819,417	+		GFF3778	0.55	-1.4
3,819,417	+		GFF3778	0.55	+1.6
3,819,417	+		GFF3778	0.55	-0.3
3,819,417	+		GFF3778	0.55	-0.5
3,819,417	+		GFF3778	0.55	+0.1
3,819,425	-		GFF3778	0.55	-1.4
3,819,425	-		GFF3778	0.55	+0.8
3,819,425	-		GFF3778	0.55	-0.5
3,819,447	+		GFF3778	0.56	+0.0
3,819,455	-		GFF3778	0.56	+0.4
3,819,565	+		GFF3778	0.60	+0.2
3,819,573	-		GFF3778	0.61	-0.5
3,819,573	-		GFF3778	0.61	+0.2
3,819,604	-		GFF3778	0.62	-1.8
3,819,604	-		GFF3778	0.62	+1.4
3,819,616	-		GFF3778	0.62	-0.5
3,819,625	+		GFF3778	0.63	-0.1
3,819,625	+		GFF3778	0.63	-1.5
3,819,652	-		GFF3778	0.64	+0.4
3,819,667	-		GFF3778	0.64	+1.9
3,819,677	-		GFF3778	0.64	+0.7
3,819,697	-		GFF3778	0.65	+1.3
3,819,705	-		GFF3778	0.65	+0.5
3,819,735	-		GFF3778	0.66	+0.1
3,819,785	-		GFF3778	0.68	+0.6
3,819,795	-		GFF3778	0.69	-1.7
3,820,668	+				+1.2
3,820,671	-				+0.8
3,820,682	-				-0.1
3,820,682	-				-0.2
3,820,682	-				+0.8
3,820,709	-				-1.0
3,820,728	-				+0.8
3,820,728	-				-1.5
3,820,730	-				-0.4
3,820,747	+				-2.1
3,820,755	-				-0.1
3,820,788	-				+1.7
3,820,793	-				-0.8
3,820,798	-				+0.4
3,820,838	+		GFF3779	0.11	-0.5
3,820,875	+		GFF3779	0.14	-0.0
3,820,875	+		GFF3779	0.14	+2.6
3,820,883	-		GFF3779	0.15	+0.0
3,820,908	-		GFF3779	0.17	-1.4
3,820,908	-		GFF3779	0.17	+1.3
3,820,923	+		GFF3779	0.18	+0.4
3,820,924	-		GFF3779	0.18	-2.5
3,820,969	+		GFF3779	0.23	-0.5
3,820,974	+		GFF3779	0.23	-0.1
3,821,014	+		GFF3779	0.27	-2.0
3,821,015	-		GFF3779	0.27	-0.6
3,821,042	+		GFF3779	0.29	-0.7
3,821,042	+		GFF3779	0.29	+0.2
3,821,042	+		GFF3779	0.29	-1.0
3,821,042	-		GFF3779	0.29	-0.2
3,821,043	-		GFF3779	0.29	-0.1
3,821,050	-		GFF3779	0.30	+0.1
3,821,077	+		GFF3779	0.32	-0.7
3,821,098	+		GFF3779	0.34	-3.1
3,821,103	+		GFF3779	0.35	+0.5
3,821,103	+		GFF3779	0.35	-2.1
3,821,103	+		GFF3779	0.35	-1.1
3,821,111	-		GFF3779	0.36	+0.9
3,821,111	-		GFF3779	0.36	-2.4
3,821,111	-		GFF3779	0.36	-1.5
3,821,111	-		GFF3779	0.36	-0.2
3,821,142	+		GFF3779	0.38	+0.9
3,821,168	+		GFF3779	0.41	+0.4
3,821,170	-		GFF3779	0.41	+0.5
3,821,176	-		GFF3779	0.41	+0.5
3,821,226	-		GFF3779	0.46	-0.1
3,821,228	+		GFF3779	0.46	+0.5
3,821,233	+		GFF3779	0.47	+0.4
3,821,233	+		GFF3779	0.47	+0.2
3,821,233	+		GFF3779	0.47	+0.5
3,821,233	+		GFF3779	0.47	+0.9
3,821,241	-		GFF3779	0.47	-0.6
3,821,241	-		GFF3779	0.47	+0.3
3,821,241	-		GFF3779	0.47	+0.9
3,821,251	-		GFF3779	0.48	-1.1
3,821,253	+		GFF3779	0.49	+0.8
3,821,253	+		GFF3779	0.49	-0.7
3,821,261	-		GFF3779	0.49	-1.7
3,821,261	-		GFF3779	0.49	+0.6
3,821,261	-		GFF3779	0.49	+0.1
3,821,263	+		GFF3779	0.49	-0.3
3,821,288	+		GFF3779	0.52	-0.1
3,821,288	+		GFF3779	0.52	-0.2
3,821,314	+		GFF3779	0.54	-2.1
3,821,319	+		GFF3779	0.55	-1.1
3,821,319	+		GFF3779	0.55	+0.7
3,821,319	+		GFF3779	0.55	-1.1
3,821,319	+		GFF3779	0.55	-1.5
3,821,319	+		GFF3779	0.55	-1.1
3,821,319	+		GFF3779	0.55	-1.6
3,821,319	+		GFF3779	0.55	+0.5
3,821,319	+		GFF3779	0.55	+0.4
3,821,320	+		GFF3779	0.55	-0.2
3,821,323	-		GFF3779	0.55	+0.2
3,821,325	+		GFF3779	0.55	-2.0
3,821,325	+		GFF3779	0.55	+0.2
3,821,325	+		GFF3779	0.55	-0.7
3,821,325	+		GFF3779	0.55	-1.8
3,821,325	+		GFF3779	0.55	-1.2
3,821,325	+		GFF3779	0.55	-0.9
3,821,327	-		GFF3779	0.55	-0.7
3,821,327	-		GFF3779	0.55	+0.6
3,821,327	-		GFF3779	0.55	-0.7
3,821,327	-		GFF3779	0.55	-0.9
3,821,331	+		GFF3779	0.56	-0.5
3,821,333	-		GFF3779	0.56	-2.0
3,821,333	-		GFF3779	0.56	-2.8
3,821,333	-		GFF3779	0.56	+0.3
3,821,333	-		GFF3779	0.56	-0.1
3,821,333	-		GFF3779	0.56	+0.9
3,821,333	-		GFF3779	0.56	+1.2
3,821,338	+		GFF3779	0.56	-0.3
3,821,343	+		GFF3779	0.57	-1.7
3,821,380	-		GFF3779	0.60	+0.5
3,821,386	+		GFF3779	0.61	+2.5
3,821,394	-		GFF3779	0.61	-1.0
3,821,394	-		GFF3779	0.61	-1.0
3,821,396	+		GFF3779	0.62	-0.9
3,821,396	+		GFF3779	0.62	-0.6
3,821,396	+		GFF3779	0.62	+1.1
3,821,447	+		GFF3779	0.66	+0.3
3,821,447	+		GFF3779	0.66	-0.8
3,821,452	+		GFF3779	0.67	+0.5
3,821,455	-		GFF3779	0.67	-0.6
3,821,455	-		GFF3779	0.67	-0.9
3,821,460	-		GFF3779	0.67	-0.8
3,821,460	-		GFF3779	0.67	-1.2
3,821,460	-		GFF3779	0.67	+1.2
3,821,460	-		GFF3779	0.67	-1.7
3,821,465	-		GFF3779	0.68	+0.8
3,821,465	-		GFF3779	0.68	-0.1
3,821,472	+		GFF3779	0.69	-1.7
3,821,472	+		GFF3779	0.69	-0.9
3,821,480	-		GFF3779	0.69	-1.5
3,821,480	-		GFF3779	0.69	-0.9
3,821,480	-		GFF3779	0.69	-1.1
3,821,512	+		GFF3779	0.72	-1.6
3,821,516	-		GFF3779	0.73	+0.2
3,821,524	-		GFF3779	0.73	-0.5
3,821,524	-		GFF3779	0.73	-0.9
3,821,571	+		GFF3779	0.78	-0.2
3,821,573	+		GFF3779	0.78	+0.9
3,821,573	+		GFF3779	0.78	+0.5
3,821,573	+		GFF3779	0.78	+0.3
3,821,581	-		GFF3779	0.79	+0.0
3,821,581	-		GFF3779	0.79	-1.8
3,821,581	-		GFF3779	0.79	+0.2
3,821,625	-		GFF3779	0.83	+0.0
3,821,625	-		GFF3779	0.83	-1.8
3,821,627	-		GFF3779	0.83	-0.7
3,821,664	+		GFF3779	0.86	-1.3
3,821,664	+		GFF3779	0.86	-1.6
3,821,669	-		GFF3779	0.87	+1.9
3,821,669	-		GFF3779	0.87	+2.2
3,821,669	-		GFF3779	0.87	+0.3
3,821,669	-		GFF3779	0.87	-0.8
3,821,672	-		GFF3779	0.87	-2.5