Strain Fitness in Sphingobium sp. HT1-2 around GFF3764

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,800,688	-		GFF3762	0.72	-1.0
3,800,688	-		GFF3762	0.72	-1.0
3,800,688	-		GFF3762	0.72	+0.3
3,800,688	-		GFF3762	0.72	+0.4
3,800,727	-		GFF3762	0.76	+0.9
3,800,733	-		GFF3762	0.77	-0.4
3,800,737	-		GFF3762	0.77	+0.3
3,800,746	-		GFF3762	0.78	-0.8
3,800,761	+		GFF3762	0.79	-1.2
3,800,767	-		GFF3762	0.80	+0.8
3,800,777	+		GFF3762	0.81	-0.2
3,800,785	-		GFF3762	0.81	-0.7
3,800,785	-		GFF3762	0.81	-0.0
3,800,843	+		GFF3762	0.87	+0.2
3,800,850	-		GFF3762	0.87	-0.3
3,800,886	+				-1.0
3,800,894	-				+0.8
3,800,896	+				+0.1
3,800,896	+				+0.1
3,800,896	+				+0.6
3,800,896	+				-0.2
3,800,896	+				-1.6
3,800,896	+				+0.5
3,800,896	+				-1.1
3,800,896	+				+0.4
3,800,896	+				+0.0
3,800,896	+				-1.7
3,800,896	+				+0.4
3,800,904	-				-1.2
3,800,904	-				+0.1
3,800,904	-				+0.4
3,800,904	-				-0.6
3,800,904	-				+0.8
3,800,904	-				+1.2
3,800,904	-				+0.1
3,800,904	-				-1.4
3,800,904	-				-0.0
3,800,904	-				-0.8
3,800,904	-				-2.3
3,800,904	-				+0.2
3,800,904	-				+0.3
3,800,921	-				-0.1
3,800,932	+				+0.3
3,800,932	+				-0.4
3,800,932	+				-1.5
3,800,932	+				+1.2
3,800,932	+				+0.4
3,800,932	+				-0.1
3,800,932	+				-2.3
3,800,932	+				-0.4
3,800,932	+				-1.0
3,800,932	+				-1.6
3,800,932	+				+0.6
3,800,937	+				-1.5
3,800,940	-				+0.7
3,800,940	-				-1.5
3,800,940	-				-1.2
3,800,940	-				+0.4
3,800,940	-				-1.6
3,800,940	-				-0.9
3,800,940	-				+0.1
3,800,940	-				-0.0
3,800,940	-				+0.2
3,800,940	-				+0.1
3,800,940	-				-0.1
3,800,942	+				-1.2
3,800,945	-				-0.2
3,800,947	+				+0.7
3,800,950	-				+0.6
3,801,038	+				+0.0
3,801,043	+		GFF3763	0.10	-1.1
3,801,046	-		GFF3763	0.11	-2.2
3,801,046	-		GFF3763	0.11	-0.2
3,801,062	+		GFF3763	0.13	-1.4
3,801,070	-		GFF3763	0.14	-0.5
3,801,114	+		GFF3763	0.22	+0.0
3,801,122	+		GFF3763	0.23	-2.8
3,801,197	+		GFF3763	0.35	-1.4
3,801,223	+		GFF3763	0.39	-1.4
3,801,223	+		GFF3763	0.39	-2.3
3,801,256	+		GFF3763	0.45	-0.4
3,801,264	-		GFF3763	0.46	+0.2
3,801,264	-		GFF3763	0.46	-0.2
3,801,264	-		GFF3763	0.46	-1.2
3,801,294	-		GFF3763	0.51	-0.9
3,801,305	+		GFF3763	0.53	-0.6
3,801,356	-		GFF3763	0.61	-0.3
3,801,360	+		GFF3763	0.62	+0.8
3,801,360	+		GFF3763	0.62	-0.0
3,801,369	-		GFF3763	0.63	-0.1
3,801,399	+		GFF3763	0.68	+1.5
3,801,420	+		GFF3763	0.71	+0.5
3,801,420	+		GFF3763	0.71	-0.2
3,801,420	+		GFF3763	0.71	-0.1
3,801,420	+		GFF3763	0.71	+0.4
3,801,420	+		GFF3763	0.71	+0.8
3,801,420	+		GFF3763	0.71	-0.1
3,801,420	+		GFF3763	0.71	-0.6
3,801,420	+		GFF3763	0.71	-1.7
3,801,420	+		GFF3763	0.71	-1.9
3,801,420	+		GFF3763	0.71	-0.5
3,801,420	+		GFF3763	0.71	-1.0
3,801,426	-		GFF3763	0.72	+0.8
3,801,428	-		GFF3763	0.73	+0.0
3,801,428	-		GFF3763	0.73	+0.6
3,801,428	-		GFF3763	0.73	-0.5
3,801,428	-		GFF3763	0.73	+0.1
3,801,428	-		GFF3763	0.73	-0.2
3,801,428	-		GFF3763	0.73	-0.4
3,801,428	-		GFF3763	0.73	+0.5
3,801,428	-		GFF3763	0.73	+0.2
3,801,453	+		GFF3763	0.77	-0.6
3,801,453	+		GFF3763	0.77	-1.2
3,801,453	+		GFF3763	0.77	-0.2
3,801,453	+		GFF3763	0.77	-0.2
3,801,458	+		GFF3763	0.78	-0.5
3,801,461	-		GFF3763	0.78	-0.6
3,801,461	-		GFF3763	0.78	+0.1
3,801,461	-		GFF3763	0.78	-1.9
3,801,461	-		GFF3763	0.78	+1.0
3,801,461	-		GFF3763	0.78	+1.2
3,801,461	-		GFF3763	0.78	-0.9
3,801,461	-		GFF3763	0.78	+0.2
3,801,461	-		GFF3763	0.78	-0.5
3,801,461	-		GFF3763	0.78	-2.6
3,801,463	+		GFF3763	0.78	+0.1
3,801,468	+		GFF3763	0.79	-0.5
3,801,468	+		GFF3763	0.79	-1.8
3,801,476	-		GFF3763	0.80	-0.6
3,801,480	-		GFF3763	0.81	-0.5
3,801,503	+		GFF3763	0.85	+0.0
3,801,511	-		GFF3763	0.86	-1.5
3,801,517	+		GFF3763	0.87	-0.1
3,801,535	-				+0.9
3,801,572	+				+0.4
3,801,577	+				+0.0
3,801,577	+				-0.6
3,801,614	-				+1.2
3,801,684	-				+0.5
3,801,804	+				-0.9
3,801,840	+				-0.4
3,801,840	+				+0.2
3,801,840	+				-0.3
3,801,845	+				-0.4
3,801,848	-				-1.2
3,801,848	-				-1.6
3,801,853	-				+1.1
3,801,853	-				+0.9
3,801,859	-				-0.2
3,801,859	-				-2.6
3,801,870	-				-1.5
3,801,870	-				-0.4
3,801,917	-				-1.2
3,802,005	+				-1.6
3,802,013	-				+0.1
3,802,038	+				+1.0
3,802,058	-		GFF3765	0.11	+0.0
3,802,071	+		GFF3765	0.12	-0.4
3,802,071	+		GFF3765	0.12	-0.5
3,802,077	+		GFF3765	0.13	+0.0
3,802,107	+		GFF3765	0.15	+0.6
3,802,168	+		GFF3765	0.20	+0.4
3,802,170	-		GFF3765	0.20	-1.7
3,802,176	-		GFF3765	0.20	-1.1
3,802,176	-		GFF3765	0.20	+0.5
3,802,180	+		GFF3765	0.20	-0.4
3,802,180	+		GFF3765	0.20	-1.4
3,802,190	+		GFF3765	0.21	+0.5
3,802,190	+		GFF3765	0.21	+0.5
3,802,198	-		GFF3765	0.22	-0.4
3,802,198	-		GFF3765	0.22	+0.8
3,802,198	-		GFF3765	0.22	-0.8
3,802,212	-		GFF3765	0.23	-0.3
3,802,224	+		GFF3765	0.24	-0.6
3,802,231	+		GFF3765	0.24	+0.8
3,802,231	+		GFF3765	0.24	-1.4
3,802,232	-		GFF3765	0.24	-3.1
3,802,234	+		GFF3765	0.24	+0.1
3,802,239	+		GFF3765	0.25	-0.9
3,802,239	+		GFF3765	0.25	+0.6
3,802,244	+		GFF3765	0.25	+0.1
3,802,247	-		GFF3765	0.25	+1.2
3,802,247	-		GFF3765	0.25	-0.2
3,802,249	+		GFF3765	0.26	-0.4
3,802,256	+		GFF3765	0.26	-1.0
3,802,271	+		GFF3765	0.27	-1.1
3,802,271	+		GFF3765	0.27	+0.4
3,802,279	-		GFF3765	0.28	-0.0
3,802,331	+		GFF3765	0.32	+1.4
3,802,344	-		GFF3765	0.33	-1.1
3,802,352	-		GFF3765	0.33	+0.4
3,802,357	+		GFF3765	0.34	-1.3
3,802,365	-		GFF3765	0.34	-1.2
3,802,366	-		GFF3765	0.34	-0.8
3,802,389	-		GFF3765	0.36	+1.4
3,802,392	-		GFF3765	0.36	+0.6
3,802,399	-		GFF3765	0.37	+0.4
3,802,436	+		GFF3765	0.39	-2.6
3,802,442	-		GFF3765	0.40	+0.7
3,802,495	-		GFF3765	0.44	+0.9
3,802,528	+		GFF3765	0.46	+0.0
3,802,532	+		GFF3765	0.47	-0.1
3,802,554	+		GFF3765	0.48	+0.4
3,802,554	+		GFF3765	0.48	-1.0
3,802,554	+		GFF3765	0.48	+0.1
3,802,554	+		GFF3765	0.48	-0.7
3,802,555	+		GFF3765	0.48	-2.2
3,802,555	+		GFF3765	0.48	-0.4
3,802,556	+		GFF3765	0.48	-0.2
3,802,556	+		GFF3765	0.48	+0.3
3,802,562	-		GFF3765	0.49	+0.3
3,802,596	-		GFF3765	0.51	-1.3
3,802,596	-		GFF3765	0.51	+0.9
3,802,608	+		GFF3765	0.52	-0.2
3,802,608	+		GFF3765	0.52	+0.8
3,802,616	-		GFF3765	0.53	+0.4
3,802,623	-		GFF3765	0.53	-1.9
3,802,656	+		GFF3765	0.56	-1.0
3,802,678	+		GFF3765	0.57	+0.9
3,802,686	-		GFF3765	0.58	-1.4
3,802,690	-		GFF3765	0.58	+0.6
3,802,734	+		GFF3765	0.62	-1.1
3,802,734	+		GFF3765	0.62	-1.0
3,802,734	+		GFF3765	0.62	-0.1
3,802,742	-		GFF3765	0.62	-1.3
3,802,742	-		GFF3765	0.62	-0.4
3,802,742	-		GFF3765	0.62	-0.2
3,802,742	-		GFF3765	0.62	-1.1
3,802,742	-		GFF3765	0.62	+0.1
3,802,753	-		GFF3765	0.63	-1.2
3,802,756	+		GFF3765	0.63	+0.7
3,802,756	+		GFF3765	0.63	-0.7
3,802,756	+		GFF3765	0.63	+0.1