Strain Fitness in Sphingobium sp. HT1-2 around GFF3753

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,791,820	+		GFF3751	0.24	-0.4
3,791,837	+		GFF3751	0.26	-0.5
3,791,837	+		GFF3751	0.26	-0.2
3,791,842	+		GFF3751	0.27	-0.4
3,791,842	+		GFF3751	0.27	-0.1
3,791,842	+		GFF3751	0.27	+0.5
3,791,850	-		GFF3751	0.28	-0.2
3,791,850	-		GFF3751	0.28	-1.7
3,791,850	-		GFF3751	0.28	-1.1
3,791,850	-		GFF3751	0.28	-0.0
3,791,850	-		GFF3751	0.28	-1.5
3,791,850	-		GFF3751	0.28	-0.5
3,791,873	+		GFF3751	0.31	+1.7
3,791,878	+		GFF3751	0.32	+0.3
3,791,908	-		GFF3751	0.36	-0.6
3,791,908	-		GFF3751	0.36	-0.3
3,791,924	+		GFF3751	0.39	+1.1
3,791,932	-		GFF3751	0.40	+0.3
3,791,980	+		GFF3751	0.47	-0.0
3,791,980	+		GFF3751	0.47	+0.7
3,791,980	+		GFF3751	0.47	-1.8
3,791,980	+		GFF3751	0.47	-0.4
3,791,986	+		GFF3751	0.48	-0.2
3,791,986	+		GFF3751	0.48	-0.6
3,791,986	+		GFF3751	0.48	-0.5
3,791,986	+		GFF3751	0.48	-0.7
3,791,986	+		GFF3751	0.48	-1.7
3,791,988	-		GFF3751	0.48	+0.4
3,791,988	-		GFF3751	0.48	-1.0
3,791,988	-		GFF3751	0.48	-0.3
3,791,993	-		GFF3751	0.49	+0.5
3,791,994	-		GFF3751	0.49	-1.6
3,791,994	-		GFF3751	0.49	-0.3
3,792,005	+		GFF3751	0.50	-1.9
3,792,010	+		GFF3751	0.51	-0.4
3,792,010	+		GFF3751	0.51	+1.0
3,792,010	+		GFF3751	0.51	-1.0
3,792,013	-		GFF3751	0.51	+0.7
3,792,013	-		GFF3751	0.51	+0.3
3,792,015	-		GFF3751	0.52	-1.7
3,792,032	-		GFF3751	0.54	+0.3
3,792,050	+		GFF3751	0.57	-0.2
3,792,058	-		GFF3751	0.58	-0.3
3,792,067	+		GFF3751	0.59	+1.0
3,792,114	-		GFF3751	0.66	-0.5
3,792,116	-		GFF3751	0.66	-0.5
3,792,143	+		GFF3751	0.70	-0.0
3,792,155	+		GFF3751	0.72	-1.5
3,792,158	-		GFF3751	0.72	-1.3
3,792,160	+		GFF3751	0.73	+1.6
3,792,160	+		GFF3751	0.73	+0.4
3,792,160	+		GFF3751	0.73	-0.0
3,792,160	+		GFF3751	0.73	-2.5
3,792,160	+		GFF3751	0.73	-0.4
3,792,163	-		GFF3751	0.73	-1.4
3,792,168	-		GFF3751	0.74	-2.2
3,792,168	-		GFF3751	0.74	-0.5
3,792,168	-		GFF3751	0.74	+1.3
3,792,168	-		GFF3751	0.74	+0.5
3,792,168	-		GFF3751	0.74	-0.5
3,792,168	-		GFF3751	0.74	+0.1
3,792,168	-		GFF3751	0.74	-2.0
3,792,186	+		GFF3751	0.76	+0.9
3,792,199	-		GFF3751	0.78	-1.2
3,792,214	+		GFF3751	0.80	-0.9
3,792,219	+		GFF3751	0.81	+0.1
3,792,225	+		GFF3751	0.82	-0.6
3,792,227	-		GFF3751	0.82	-0.6
3,792,227	-		GFF3751	0.82	+0.5
3,792,227	-		GFF3751	0.82	-0.7
3,792,232	-		GFF3751	0.83	-0.5
3,792,266	-		GFF3751	0.88	+0.8
3,792,321	+				-2.4
3,792,321	+				-0.4
3,792,324	-				-1.0
3,792,329	-				-0.2
3,792,329	-				-0.0
3,792,329	-				-0.1
3,792,329	-				-0.0
3,792,329	-				-2.5
3,792,329	-				-0.1
3,792,329	-				+0.0
3,792,340	-				-1.2
3,792,360	-				+1.8
3,792,372	+				+0.0
3,792,380	-				-0.4
3,792,399	+				-0.3
3,792,419	-				-0.5
3,792,421	-				+0.4
3,792,426	+				-0.1
3,792,449	+				+1.0
3,792,494	+		GFF3752	0.14	-2.0
3,792,502	-		GFF3752	0.17	-0.8
3,792,505	-		GFF3752	0.18	+0.7
3,792,511	+		GFF3752	0.20	+1.3
3,792,519	-		GFF3752	0.23	+0.3
3,792,519	-		GFF3752	0.23	-1.4
3,792,519	-		GFF3752	0.23	+0.4
3,792,519	-		GFF3752	0.23	-1.1
3,792,521	+		GFF3752	0.23	+0.3
3,792,524	+		GFF3752	0.24	-1.6
3,792,524	+		GFF3752	0.24	+0.5
3,792,537	-		GFF3752	0.29	+2.0
3,792,552	+		GFF3752	0.34	+0.8
3,792,560	-		GFF3752	0.37	-0.0
3,792,624	+		GFF3752	0.59	+0.9
3,792,632	+		GFF3752	0.62	+0.7
3,792,634	+		GFF3752	0.62	+1.0
3,792,634	-		GFF3752	0.62	-2.1
3,792,637	+		GFF3752	0.64	+0.3
3,792,640	-		GFF3752	0.65	-0.3
3,792,673	+		GFF3752	0.76	-0.9
3,792,708	+		GFF3752	0.88	-0.2
3,792,716	+				-0.4
3,792,716	-				+0.2
3,792,724	-				-2.2
3,792,724	-				+1.2
3,792,724	-				+0.6
3,792,736	-				-1.2
3,792,736	-				-0.2
3,792,750	+				+0.4
3,792,750	+				-1.7
3,792,750	+				+0.2
3,792,766	-				-0.4
3,792,814	+				-2.0
3,792,822	-				+0.2
3,792,824	+				-0.7
3,792,824	+				-1.0
3,792,832	-				-0.4
3,792,837	+				+1.2
3,792,838	-				-0.2
3,792,858	-				-0.1
3,793,498	+				-0.6
3,793,498	+				-1.1
3,793,499	-				+1.1
3,793,499	-				-1.0
3,793,499	-				+0.1
3,793,515	+				+0.5
3,793,515	+				-0.9
3,793,515	+				-0.6
3,793,515	+				+0.6
3,793,515	+				-1.2
3,793,520	+				-1.0
3,793,523	-				-0.1
3,793,523	-				-0.7
3,793,523	-				+0.3
3,793,523	-				-0.3
3,793,544	+				+1.1
3,793,559	+				-0.0
3,793,564	+				+0.5
3,793,564	+				+0.1
3,793,564	+				-1.6
3,793,564	+				-0.0
3,793,564	+				-1.2
3,793,564	+				+0.1
3,793,564	+				-1.8
3,793,564	+				-0.2
3,793,564	+				-0.1
3,793,564	+				-1.1
3,793,564	+				-1.7
3,793,564	+				+0.5
3,793,567	-				-0.2
3,793,569	+				+0.2
3,793,569	+				-3.0
3,793,569	+				+0.3
3,793,569	+				-1.5
3,793,570	+				-0.6
3,793,572	-				+0.5
3,793,572	-				+0.3
3,793,572	-				-1.5
3,793,572	-				+1.0
3,793,576	+				+0.2
3,793,576	+				-0.7
3,793,576	+				-1.6
3,793,577	-				+0.5
3,793,577	-				-1.4
3,793,577	-				+0.9
3,793,577	-				-1.0
3,793,577	-				-2.2
3,793,577	-				-2.6
3,793,584	-				-1.7
3,793,584	-				+0.0
3,793,584	-				-0.2
3,793,584	-				+1.3
3,793,584	-				-1.7
3,793,584	-				-0.7
3,793,616	-				-1.2
3,793,635	+				-0.7
3,793,656	+				-2.5
3,793,661	-				-0.5
3,793,661	-				-2.0
3,793,669	+		GFF3754	0.11	+0.2
3,793,674	+		GFF3754	0.11	-0.3
3,793,674	-		GFF3754	0.11	-1.1
3,793,691	+		GFF3754	0.13	-2.1
3,793,699	-		GFF3754	0.14	-1.5
3,793,725	+		GFF3754	0.18	+0.5
3,793,751	+		GFF3754	0.21	+1.1
3,793,759	-		GFF3754	0.22	+0.4
3,793,761	+		GFF3754	0.22	-1.9
3,793,761	+		GFF3754	0.22	-0.4
3,793,761	+		GFF3754	0.22	-0.5
3,793,761	+		GFF3754	0.22	-1.9
3,793,764	-		GFF3754	0.23	+0.1
3,793,769	-		GFF3754	0.23	-0.3
3,793,769	-		GFF3754	0.23	+0.1
3,793,769	-		GFF3754	0.23	+0.3
3,793,771	+		GFF3754	0.23	-1.6
3,793,790	+		GFF3754	0.26	+0.3
3,793,797	+		GFF3754	0.27	-0.6
3,793,805	-		GFF3754	0.28	-0.8
3,793,815	-		GFF3754	0.29	+1.1
3,793,844	-		GFF3754	0.33	+0.7
3,793,865	+		GFF3754	0.35	+0.6
3,793,865	+		GFF3754	0.35	-0.6
3,793,865	+		GFF3754	0.35	-0.4
3,793,865	+		GFF3754	0.35	-2.6
3,793,865	+		GFF3754	0.35	-2.0
3,793,865	+		GFF3754	0.35	+0.1
3,793,865	+		GFF3754	0.35	-0.2
3,793,868	-		GFF3754	0.36	-0.3
3,793,873	-		GFF3754	0.36	+0.8
3,793,882	+		GFF3754	0.37	+0.9
3,793,884	-		GFF3754	0.38	-0.9
3,793,887	+		GFF3754	0.38	+0.2
3,793,888	+		GFF3754	0.38	+0.3
3,793,911	+		GFF3754	0.41	-0.5
3,793,911	+		GFF3754	0.41	+2.2
3,793,914	-		GFF3754	0.41	-1.1
3,793,917	-		GFF3754	0.42	-2.1
3,793,919	-		GFF3754	0.42	+0.5
3,793,919	-		GFF3754	0.42	+0.0
3,793,921	+		GFF3754	0.42	-0.8
3,793,978	+		GFF3754	0.49	-1.3
3,793,978	+		GFF3754	0.49	-1.2
3,793,978	+		GFF3754	0.49	-0.7
3,793,986	-		GFF3754	0.50	-1.2
3,793,986	-		GFF3754	0.50	-0.2
3,793,986	-		GFF3754	0.50	-1.8
3,793,986	-		GFF3754	0.50	+1.1
3,793,986	-		GFF3754	0.50	+0.5
3,793,991	-		GFF3754	0.51	-2.4
3,793,993	+		GFF3754	0.51	-2.8
3,793,993	+		GFF3754	0.51	+0.2
3,793,993	+		GFF3754	0.51	+0.1
3,793,996	-		GFF3754	0.52	-1.1
3,794,001	-		GFF3754	0.52	-0.5
3,794,036	+		GFF3754	0.57	-0.0
3,794,047	+		GFF3754	0.58	+0.3
3,794,050	+		GFF3754	0.58	+0.2
3,794,056	+		GFF3754	0.59	-1.2
3,794,056	-		GFF3754	0.59	-0.3
3,794,058	-		GFF3754	0.59	+0.1
3,794,067	+		GFF3754	0.61	+0.5
3,794,072	+		GFF3754	0.61	-0.2
3,794,087	+		GFF3754	0.63	+0.9
3,794,090	-		GFF3754	0.64	-0.9
3,794,090	-		GFF3754	0.64	-2.7
3,794,090	-		GFF3754	0.64	+0.1
3,794,095	-		GFF3754	0.64	+0.3
3,794,108	+		GFF3754	0.66	-0.3
3,794,134	-		GFF3754	0.69	+0.8
3,794,156	-		GFF3754	0.72	+1.3
3,794,159	+		GFF3754	0.72	-0.1
3,794,167	-		GFF3754	0.73	+0.5
3,794,167	-		GFF3754	0.73	+0.2
3,794,180	+		GFF3754	0.75	-2.0
3,794,180	+		GFF3754	0.75	+0.8
3,794,183	-		GFF3754	0.75	+1.6
3,794,185	+		GFF3754	0.75	+1.0
3,794,188	-		GFF3754	0.76	-1.1
3,794,265	+		GFF3754	0.86	-0.7
3,794,265	+		GFF3754	0.86	-0.9
3,794,271	-		GFF3754	0.86	-0.9
3,794,273	-		GFF3754	0.87	-0.5
3,794,291	-		GFF3754	0.89	-0.4
3,794,319	+				+0.3
3,794,325	+				+0.0
3,794,327	-				+0.3
3,794,327	-				+0.4
3,794,364	+				+0.5
3,794,407	-				-0.0
3,794,410	+				+1.4
3,794,414	+				+0.1
3,794,430	+		GFF3755	0.12	-0.6
3,794,439	+		GFF3755	0.13	-0.6
3,794,445	+		GFF3755	0.14	-1.4
3,794,460	+		GFF3755	0.17	+0.1
3,794,460	+		GFF3755	0.17	+0.0
3,794,468	-		GFF3755	0.18	-0.6
3,794,468	-		GFF3755	0.18	+0.5
3,794,490	+		GFF3755	0.21	+0.4
3,794,501	+		GFF3755	0.23	+0.7
3,794,501	+		GFF3755	0.23	+0.6
3,794,501	+		GFF3755	0.23	-0.2
3,794,506	+		GFF3755	0.24	+1.2
3,794,506	+		GFF3755	0.24	+1.5