Strain Fitness in Sphingobium sp. HT1-2 around GFF3750

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,790,002	+		GFF3748	0.40	-1.5
3,790,026	+		GFF3748	0.46	+0.8
3,790,035	+		GFF3748	0.48	-1.7
3,790,035	+		GFF3748	0.48	-1.1
3,790,035	+		GFF3748	0.48	+1.3
3,790,035	+		GFF3748	0.48	+0.2
3,790,043	-		GFF3748	0.50	+0.2
3,790,043	-		GFF3748	0.50	+0.3
3,790,048	-		GFF3748	0.51	+0.4
3,790,130	+		GFF3748	0.72	-1.2
3,790,130	+		GFF3748	0.72	-2.6
3,790,170	-		GFF3748	0.81	+0.4
3,790,190	-		GFF3748	0.86	+0.3
3,790,239	+				-0.5
3,790,255	+				-1.1
3,790,255	+				+1.2
3,790,255	+				-0.2
3,790,255	+				+0.1
3,790,263	-				+1.7
3,790,278	+				+0.7
3,790,278	+				+1.0
3,790,278	+				-1.1
3,790,286	-				-1.2
3,790,286	-				-1.2
3,790,343	+				+0.4
3,790,408	+		GFF3749	0.16	-0.4
3,790,408	+		GFF3749	0.16	+0.8
3,790,434	-		GFF3749	0.20	+0.5
3,790,459	-		GFF3749	0.24	-1.8
3,790,492	+		GFF3749	0.28	-0.7
3,790,524	-		GFF3749	0.33	+0.2
3,790,524	-		GFF3749	0.33	-0.1
3,790,552	-		GFF3749	0.37	-1.8
3,790,587	-		GFF3749	0.42	-1.2
3,790,632	+		GFF3749	0.48	+0.1
3,790,638	+		GFF3749	0.49	-1.1
3,790,640	-		GFF3749	0.49	-0.7
3,790,690	+		GFF3749	0.57	-0.2
3,790,692	+		GFF3749	0.57	+0.3
3,790,698	-		GFF3749	0.58	+0.5
3,790,698	-		GFF3749	0.58	-0.2
3,790,722	+		GFF3749	0.61	-1.8
3,790,765	-		GFF3749	0.67	-0.5
3,790,766	-		GFF3749	0.67	-0.8
3,790,796	+		GFF3749	0.72	-1.5
3,790,796	-		GFF3749	0.72	-0.1
3,790,804	-		GFF3749	0.73	+0.5
3,790,804	-		GFF3749	0.73	-0.3
3,790,808	+		GFF3749	0.73	-0.6
3,790,816	-		GFF3749	0.75	+1.6
3,790,834	+		GFF3749	0.77	+0.5
3,790,904	+		GFF3749	0.87	+0.0
3,790,912	+		GFF3749	0.88	-0.4
3,790,912	+		GFF3749	0.88	-1.3
3,790,918	+		GFF3749	0.89	-0.7
3,790,933	+				-0.5
3,790,940	-				-0.2
3,790,942	+				+0.3
3,790,947	+				-0.5
3,790,947	+				+0.3
3,790,950	-				+0.1
3,790,963	+				+0.9
3,790,988	+				-0.9
3,790,988	+				-1.0
3,790,996	-				-0.2
3,790,996	-				+0.3
3,790,996	-				+0.1
3,790,996	-				-1.5
3,790,997	-				-2.0
3,791,003	-				-0.9
3,791,008	-				-0.5
3,791,010	-				+0.0
3,791,029	-				-0.5
3,791,041	-				+1.0
3,791,044	-				-0.9
3,791,044	-				-0.0
3,791,063	-		GFF3750	0.10	-1.6
3,791,067	+		GFF3750	0.11	-0.3
3,791,120	+		GFF3750	0.19	-1.6
3,791,149	-		GFF3750	0.23	+0.7
3,791,161	+		GFF3750	0.25	-1.2
3,791,186	+		GFF3750	0.29	+0.5
3,791,186	+		GFF3750	0.29	+1.1
3,791,244	+		GFF3750	0.38	-0.2
3,791,251	+		GFF3750	0.39	-2.3
3,791,254	-		GFF3750	0.40	+1.2
3,791,254	-		GFF3750	0.40	+0.1
3,791,259	-		GFF3750	0.40	-0.7
3,791,271	+		GFF3750	0.42	+1.3
3,791,300	+		GFF3750	0.47	-2.6
3,791,382	+		GFF3750	0.60	-2.8
3,791,382	+		GFF3750	0.60	-0.1
3,791,388	-		GFF3750	0.60	-1.2
3,791,390	-		GFF3750	0.61	+0.7
3,791,392	+		GFF3750	0.61	-0.3
3,791,392	+		GFF3750	0.61	+0.4
3,791,392	+		GFF3750	0.61	-0.6
3,791,392	+		GFF3750	0.61	-1.0
3,791,400	-		GFF3750	0.62	-0.1
3,791,400	-		GFF3750	0.62	+1.1
3,791,410	+		GFF3750	0.64	-1.2
3,791,415	+		GFF3750	0.65	+0.5
3,791,415	+		GFF3750	0.65	-0.8
3,791,428	-		GFF3750	0.67	-1.1
3,791,443	-		GFF3750	0.69	+0.6
3,791,444	+		GFF3750	0.69	+0.1
3,791,451	-		GFF3750	0.70	+0.3
3,791,452	-		GFF3750	0.70	-0.4
3,791,471	+		GFF3750	0.73	+0.8
3,791,491	-		GFF3750	0.76	-1.8
3,791,493	+		GFF3750	0.77	-0.4
3,791,493	+		GFF3750	0.77	-1.2
3,791,498	+		GFF3750	0.78	+1.1
3,791,513	-		GFF3750	0.80	+1.0
3,791,517	+		GFF3750	0.80	+0.1
3,791,517	+		GFF3750	0.80	+0.1
3,791,522	+		GFF3750	0.81	-1.0
3,791,540	+		GFF3750	0.84	+0.3
3,791,541	+		GFF3750	0.84	+0.9
3,791,561	-		GFF3750	0.87	-0.1
3,791,580	+				-0.1
3,791,610	+				-1.0
3,791,610	+				-1.1
3,791,626	+				+1.0
3,791,634	-				-1.1
3,791,636	+				-1.0
3,791,643	+				+0.7
3,791,643	+				-0.9
3,791,651	-				-0.4
3,791,653	+				-1.0
3,791,653	+				+1.1
3,791,653	+				-1.5
3,791,658	+				+0.0
3,791,658	+				-2.2
3,791,658	+				+0.8
3,791,658	+				-0.7
3,791,661	-				-1.1
3,791,661	-				+0.4
3,791,661	-				-0.8
3,791,666	-				-0.5
3,791,666	-				-0.8
3,791,695	-				-1.5
3,791,718	+				-0.4
3,791,742	+		GFF3751	0.12	+0.7
3,791,776	+		GFF3751	0.17	-2.1
3,791,784	-		GFF3751	0.19	-0.5
3,791,802	-		GFF3751	0.21	+0.5
3,791,820	+		GFF3751	0.24	-0.4
3,791,837	+		GFF3751	0.26	-0.5
3,791,837	+		GFF3751	0.26	-0.2
3,791,842	+		GFF3751	0.27	-0.4
3,791,842	+		GFF3751	0.27	-0.1
3,791,842	+		GFF3751	0.27	+0.5
3,791,850	-		GFF3751	0.28	-0.2
3,791,850	-		GFF3751	0.28	-1.7
3,791,850	-		GFF3751	0.28	-1.1
3,791,850	-		GFF3751	0.28	-0.0
3,791,850	-		GFF3751	0.28	-1.5
3,791,850	-		GFF3751	0.28	-0.5
3,791,873	+		GFF3751	0.31	+1.7
3,791,878	+		GFF3751	0.32	+0.3
3,791,908	-		GFF3751	0.36	-0.6
3,791,908	-		GFF3751	0.36	-0.3
3,791,924	+		GFF3751	0.39	+1.1
3,791,932	-		GFF3751	0.40	+0.3
3,791,980	+		GFF3751	0.47	-0.0
3,791,980	+		GFF3751	0.47	+0.7
3,791,980	+		GFF3751	0.47	-1.8
3,791,980	+		GFF3751	0.47	-0.4
3,791,986	+		GFF3751	0.48	-0.2
3,791,986	+		GFF3751	0.48	-0.6
3,791,986	+		GFF3751	0.48	-0.5
3,791,986	+		GFF3751	0.48	-0.7
3,791,986	+		GFF3751	0.48	-1.7
3,791,988	-		GFF3751	0.48	+0.4
3,791,988	-		GFF3751	0.48	-1.0
3,791,988	-		GFF3751	0.48	-0.3
3,791,993	-		GFF3751	0.49	+0.5
3,791,994	-		GFF3751	0.49	-1.6
3,791,994	-		GFF3751	0.49	-0.3
3,792,005	+		GFF3751	0.50	-1.9
3,792,010	+		GFF3751	0.51	-0.4
3,792,010	+		GFF3751	0.51	+1.0
3,792,010	+		GFF3751	0.51	-1.0
3,792,013	-		GFF3751	0.51	+0.7
3,792,013	-		GFF3751	0.51	+0.3
3,792,015	-		GFF3751	0.52	-1.7
3,792,032	-		GFF3751	0.54	+0.3
3,792,050	+		GFF3751	0.57	-0.2
3,792,058	-		GFF3751	0.58	-0.3
3,792,067	+		GFF3751	0.59	+1.0
3,792,114	-		GFF3751	0.66	-0.5
3,792,116	-		GFF3751	0.66	-0.5
3,792,143	+		GFF3751	0.70	-0.0
3,792,155	+		GFF3751	0.72	-1.5
3,792,158	-		GFF3751	0.72	-1.3
3,792,160	+		GFF3751	0.73	+1.6
3,792,160	+		GFF3751	0.73	+0.4
3,792,160	+		GFF3751	0.73	-0.0
3,792,160	+		GFF3751	0.73	-2.5
3,792,160	+		GFF3751	0.73	-0.4
3,792,163	-		GFF3751	0.73	-1.4
3,792,168	-		GFF3751	0.74	-2.2
3,792,168	-		GFF3751	0.74	-0.5
3,792,168	-		GFF3751	0.74	+1.3
3,792,168	-		GFF3751	0.74	+0.5
3,792,168	-		GFF3751	0.74	-0.5
3,792,168	-		GFF3751	0.74	+0.1
3,792,168	-		GFF3751	0.74	-2.0
3,792,186	+		GFF3751	0.76	+0.9
3,792,199	-		GFF3751	0.78	-1.2
3,792,214	+		GFF3751	0.80	-0.9
3,792,219	+		GFF3751	0.81	+0.1
3,792,225	+		GFF3751	0.82	-0.6
3,792,227	-		GFF3751	0.82	-0.6
3,792,227	-		GFF3751	0.82	+0.5
3,792,227	-		GFF3751	0.82	-0.7
3,792,232	-		GFF3751	0.83	-0.5
3,792,266	-		GFF3751	0.88	+0.8
3,792,321	+				-2.4
3,792,321	+				-0.4
3,792,324	-				-1.0
3,792,329	-				-0.2
3,792,329	-				-0.0
3,792,329	-				-0.1
3,792,329	-				-0.0
3,792,329	-				-2.5
3,792,329	-				-0.1
3,792,329	-				+0.0
3,792,340	-				-1.2
3,792,360	-				+1.8
3,792,372	+				+0.0
3,792,380	-				-0.4
3,792,399	+				-0.3
3,792,419	-				-0.5
3,792,421	-				+0.4
3,792,426	+				-0.1
3,792,449	+				+1.0
3,792,494	+		GFF3752	0.14	-2.0
3,792,502	-		GFF3752	0.17	-0.8
3,792,505	-		GFF3752	0.18	+0.7
3,792,511	+		GFF3752	0.20	+1.3
3,792,519	-		GFF3752	0.23	+0.3
3,792,519	-		GFF3752	0.23	-1.4
3,792,519	-		GFF3752	0.23	+0.4
3,792,519	-		GFF3752	0.23	-1.1
3,792,521	+		GFF3752	0.23	+0.3
3,792,524	+		GFF3752	0.24	-1.6
3,792,524	+		GFF3752	0.24	+0.5
3,792,537	-		GFF3752	0.29	+2.0
3,792,552	+		GFF3752	0.34	+0.8
3,792,560	-		GFF3752	0.37	-0.0
3,792,624	+		GFF3752	0.59	+0.9
3,792,632	+		GFF3752	0.62	+0.7
3,792,634	+		GFF3752	0.62	+1.0
3,792,634	-		GFF3752	0.62	-2.1
3,792,637	+		GFF3752	0.64	+0.3
3,792,640	-		GFF3752	0.65	-0.3