Strain Fitness in Sphingobium sp. HT1-2 around GFF3716

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,758,027	-		GFF3714	0.79	+0.3
3,758,033	+		GFF3714	0.81	+0.3
3,758,035	+		GFF3714	0.82	+0.0
3,758,110	-				+1.7
3,758,125	-				-0.9
3,758,131	+				+0.9
3,758,139	+				-0.7
3,758,139	+				+0.8
3,758,139	+				-1.7
3,758,147	-				+0.4
3,758,147	-				+0.5
3,758,173	-				-1.2
3,758,214	+				+1.1
3,758,238	+				+0.5
3,758,363	-				-0.3
3,758,379	+				-1.4
3,758,379	+				-1.7
3,758,387	-				-1.7
3,758,401	-				-0.7
3,758,401	-				-0.6
3,758,401	-				+0.8
3,758,404	+				-0.4
3,758,409	+				-0.3
3,758,411	+				-0.7
3,758,412	-				-0.3
3,758,412	-				+0.2
3,758,412	-				-0.3
3,758,412	-				-0.2
3,758,417	-				+0.4
3,758,422	-				-1.0
3,758,422	-				-0.3
3,758,452	-		GFF3715	0.14	-0.1
3,758,463	+		GFF3715	0.15	-1.2
3,758,468	+		GFF3715	0.16	+0.9
3,758,468	+		GFF3715	0.16	+0.4
3,758,473	-		GFF3715	0.17	+0.2
3,758,476	-		GFF3715	0.17	-0.2
3,758,480	+		GFF3715	0.18	+1.3
3,758,481	-		GFF3715	0.18	+0.3
3,758,497	+		GFF3715	0.20	-0.1
3,758,505	-		GFF3715	0.22	+1.2
3,758,515	+		GFF3715	0.23	-0.3
3,758,535	+		GFF3715	0.26	+1.1
3,758,535	+		GFF3715	0.26	+0.2
3,758,538	-		GFF3715	0.26	+0.4
3,758,540	+		GFF3715	0.27	-0.4
3,758,540	+		GFF3715	0.27	-1.7
3,758,540	+		GFF3715	0.27	-0.0
3,758,540	+		GFF3715	0.27	+0.4
3,758,540	+		GFF3715	0.27	-0.3
3,758,540	+		GFF3715	0.27	-0.5
3,758,540	+		GFF3715	0.27	-1.1
3,758,540	+		GFF3715	0.27	+0.6
3,758,541	-		GFF3715	0.27	-0.1
3,758,543	-		GFF3715	0.27	-0.3
3,758,543	-		GFF3715	0.27	-0.6
3,758,543	-		GFF3715	0.27	-1.3
3,758,548	-		GFF3715	0.28	+0.3
3,758,548	-		GFF3715	0.28	+0.6
3,758,548	-		GFF3715	0.28	+0.4
3,758,548	-		GFF3715	0.28	-0.6
3,758,559	+		GFF3715	0.30	-1.0
3,758,562	-		GFF3715	0.30	-1.2
3,758,576	+		GFF3715	0.32	-0.6
3,758,576	+		GFF3715	0.32	-1.1
3,758,584	-		GFF3715	0.33	-0.2
3,758,584	-		GFF3715	0.33	-2.7
3,758,584	-		GFF3715	0.33	-0.1
3,758,584	-		GFF3715	0.33	-2.2
3,758,584	-		GFF3715	0.33	-0.3
3,758,628	-		GFF3715	0.40	-0.0
3,758,660	+		GFF3715	0.45	-0.2
3,758,682	+		GFF3715	0.48	-0.6
3,758,689	-		GFF3715	0.49	-0.2
3,758,703	+		GFF3715	0.51	-1.2
3,758,722	+		GFF3715	0.54	-0.4
3,758,722	+		GFF3715	0.54	-1.4
3,758,724	+		GFF3715	0.54	-2.1
3,758,730	-		GFF3715	0.55	+0.1
3,758,732	-		GFF3715	0.55	-2.0
3,758,738	+		GFF3715	0.56	-1.2
3,758,748	+		GFF3715	0.58	+1.2
3,758,754	+		GFF3715	0.59	-1.6
3,758,754	+		GFF3715	0.59	-1.6
3,758,759	+		GFF3715	0.59	-0.1
3,758,759	+		GFF3715	0.59	+0.8
3,758,762	-		GFF3715	0.60	+0.7
3,758,765	+		GFF3715	0.60	+0.4
3,758,767	-		GFF3715	0.61	-1.9
3,758,767	-		GFF3715	0.61	-0.2
3,758,767	-		GFF3715	0.61	+1.0
3,758,786	+		GFF3715	0.64	-1.4
3,758,786	+		GFF3715	0.64	+0.9
3,758,786	+		GFF3715	0.64	+1.2
3,758,786	+		GFF3715	0.64	-1.6
3,758,794	+		GFF3715	0.65	+1.0
3,758,794	-		GFF3715	0.65	-0.2
3,758,820	-		GFF3715	0.69	-0.7
3,758,829	-		GFF3715	0.70	+0.3
3,758,833	-		GFF3715	0.71	-0.4
3,758,839	-		GFF3715	0.71	-0.5
3,758,849	+		GFF3715	0.73	-0.5
3,758,849	+		GFF3715	0.73	-1.0
3,758,849	+		GFF3715	0.73	+0.5
3,758,849	+		GFF3715	0.73	-2.4
3,758,851	+		GFF3715	0.73	+1.0
3,758,851	+		GFF3715	0.73	+0.2
3,758,857	-		GFF3715	0.74	-1.6
3,758,857	-		GFF3715	0.74	-1.4
3,758,857	-		GFF3715	0.74	-1.1
3,758,857	-		GFF3715	0.74	+0.8
3,758,858	+		GFF3715	0.74	-1.1
3,758,858	+		GFF3715	0.74	-0.5
3,758,859	-		GFF3715	0.74	-0.1
3,758,864	-		GFF3715	0.75	+0.6
3,758,866	-		GFF3715	0.75	+0.1
3,758,871	+		GFF3715	0.76	-0.1
3,758,875	+		GFF3715	0.77	-0.2
3,758,875	+		GFF3715	0.77	-0.7
3,758,882	+		GFF3715	0.78	-1.3
3,758,917	-		GFF3715	0.83	-0.7
3,758,919	-		GFF3715	0.83	-1.4
3,758,948	+		GFF3715	0.88	+1.0
3,758,950	+		GFF3715	0.88	+0.6
3,759,014	-				-0.9
3,759,080	+		GFF3716	0.11	+0.5
3,759,080	+		GFF3716	0.11	-0.2
3,759,087	+		GFF3716	0.12	-0.1
3,759,120	+		GFF3716	0.18	+0.4
3,759,120	+		GFF3716	0.18	-0.5
3,759,128	-		GFF3716	0.20	-1.2
3,759,130	+		GFF3716	0.20	-1.5
3,759,130	+		GFF3716	0.20	-2.5
3,759,138	-		GFF3716	0.22	-0.7
3,759,138	-		GFF3716	0.22	-1.2
3,759,138	-		GFF3716	0.22	-1.2
3,759,138	-		GFF3716	0.22	-2.1
3,759,138	-		GFF3716	0.22	+0.7
3,759,141	+		GFF3716	0.22	+1.1
3,759,159	+		GFF3716	0.26	-0.2
3,759,167	-		GFF3716	0.27	-1.3
3,759,168	+		GFF3716	0.28	+1.0
3,759,168	+		GFF3716	0.28	-0.1
3,759,176	-		GFF3716	0.29	-1.7
3,759,183	-		GFF3716	0.31	-1.5
3,759,213	+		GFF3716	0.36	+0.9
3,759,213	+		GFF3716	0.36	-2.1
3,759,221	-		GFF3716	0.38	+1.1
3,759,221	-		GFF3716	0.38	+1.1
3,759,223	-		GFF3716	0.38	+0.4
3,759,230	+		GFF3716	0.40	-0.2
3,759,245	-		GFF3716	0.43	+0.7
3,759,252	+		GFF3716	0.44	+2.0
3,759,255	-		GFF3716	0.45	-1.8
3,759,255	-		GFF3716	0.45	+0.3
3,759,260	-		GFF3716	0.46	+1.4
3,759,260	-		GFF3716	0.46	+0.3
3,759,260	-		GFF3716	0.46	-0.6
3,759,260	-		GFF3716	0.46	+0.2
3,759,276	+		GFF3716	0.49	-1.4
3,759,276	+		GFF3716	0.49	+0.8
3,759,276	+		GFF3716	0.49	+0.8
3,759,279	-		GFF3716	0.49	+0.8
3,759,284	-		GFF3716	0.50	+0.2
3,759,284	-		GFF3716	0.50	-1.5
3,759,288	+		GFF3716	0.51	+0.6
3,759,296	-		GFF3716	0.53	+0.4
3,759,301	+		GFF3716	0.54	-0.7
3,759,309	-		GFF3716	0.55	-0.2
3,759,311	-		GFF3716	0.56	+0.8
3,759,311	-		GFF3716	0.56	-0.1
3,759,311	-		GFF3716	0.56	-2.1
3,759,332	-		GFF3716	0.60	-1.9
3,759,332	-		GFF3716	0.60	-0.9
3,759,339	+		GFF3716	0.61	-1.2
3,759,339	+		GFF3716	0.61	-0.9
3,759,339	+		GFF3716	0.61	+1.7
3,759,344	+		GFF3716	0.62	-1.1
3,759,344	+		GFF3716	0.62	+1.6
3,759,344	+		GFF3716	0.62	-1.7
3,759,344	+		GFF3716	0.62	-0.8
3,759,344	+		GFF3716	0.62	+0.0
3,759,344	+		GFF3716	0.62	-1.1
3,759,344	+		GFF3716	0.62	+0.4
3,759,344	+		GFF3716	0.62	-1.1
3,759,344	+		GFF3716	0.62	+0.1
3,759,349	+		GFF3716	0.63	-1.1
3,759,352	-		GFF3716	0.64	-1.7
3,759,352	-		GFF3716	0.64	+0.5
3,759,352	-		GFF3716	0.64	-1.8
3,759,352	-		GFF3716	0.64	+0.4
3,759,352	-		GFF3716	0.64	-0.2
3,759,352	-		GFF3716	0.64	-1.5
3,759,352	-		GFF3716	0.64	-1.1
3,759,352	-		GFF3716	0.64	+0.0
3,759,352	-		GFF3716	0.64	+0.8
3,759,352	-		GFF3716	0.64	+0.7
3,759,375	+		GFF3716	0.68	+0.3
3,759,397	+		GFF3716	0.72	+0.6
3,759,397	+		GFF3716	0.72	-1.7
3,759,397	+		GFF3716	0.72	-1.2
3,759,397	+		GFF3716	0.72	-1.4
3,759,400	-		GFF3716	0.73	+2.3
3,759,404	+		GFF3716	0.74	+0.9
3,759,405	-		GFF3716	0.74	-1.2
3,759,410	-		GFF3716	0.75	-0.2
3,759,417	+		GFF3716	0.76	-0.1
3,759,430	+		GFF3716	0.79	-0.2
3,759,430	+		GFF3716	0.79	-0.8
3,759,433	-		GFF3716	0.79	+1.0
3,759,438	-		GFF3716	0.80	+1.7
3,759,438	-		GFF3716	0.80	-0.3
3,759,438	-		GFF3716	0.80	+0.0
3,759,438	-		GFF3716	0.80	-0.2
3,759,438	-		GFF3716	0.80	+0.0
3,759,438	-		GFF3716	0.80	-0.9
3,759,441	+		GFF3716	0.81	+0.7
3,759,441	+		GFF3716	0.81	+0.2
3,759,462	+		GFF3716	0.85	-1.6
3,759,462	+		GFF3716	0.85	-1.7
3,759,462	+		GFF3716	0.85	-1.6
3,759,462	+		GFF3716	0.85	-1.2
3,759,462	+		GFF3716	0.85	-1.9
3,759,475	+		GFF3716	0.88	+0.1
3,759,489	+				-0.0
3,759,489	+				+0.0
3,759,491	-				+0.2
3,759,497	-				+0.4
3,759,502	+				+0.5
3,759,510	-				-0.2
3,759,513	+				+0.7
3,759,517	+				-0.4
3,759,517	+				+0.2
3,759,524	+				+0.1
3,759,525	-				-1.7
3,759,525	-				+0.2
3,759,525	-				-0.4
3,759,532	+				-0.2
3,759,540	-				-0.6
3,759,540	-				-1.1
3,759,560	+				-4.1
3,759,560	+				+0.1
3,759,604	+				-1.5
3,759,604	+				+0.8
3,759,604	+				-1.2
3,759,604	+				+0.2
3,759,604	+				+0.9
3,759,604	+				+0.9
3,759,604	+				-0.6
3,759,604	+				+0.3
3,759,604	+				-0.9
3,759,604	+				-1.0
3,759,604	+				-0.5
3,759,605	-				+0.3
3,759,609	+				+0.6
3,759,612	-				+0.8
3,759,612	-				+0.2
3,759,612	-				-0.6
3,759,612	-				-0.4
3,759,612	-				+0.6
3,759,612	-				-0.6
3,759,612	-				-0.4
3,759,612	-				-0.3
3,759,612	-				+0.5
3,759,612	-				-1.2
3,759,612	-				-0.8
3,759,612	-				-0.6
3,759,619	+				-0.1
3,759,622	-				-1.2
3,759,622	-				-0.8
3,759,622	-				+0.3
3,759,632	+				-0.4
3,759,632	+				-0.9
3,759,632	+				-0.5
3,759,632	+				-0.2
3,759,632	+				+0.3
3,759,632	+				-0.4
3,759,632	+				+1.3
3,759,632	+				+1.9
3,759,632	+				+0.3
3,759,632	+				-1.1
3,759,632	+				-2.2
3,759,632	+				-0.1
3,759,637	+				-1.4
3,759,637	+				-0.9
3,759,637	+				+0.2
3,759,637	+				-2.5
3,759,637	+				+0.5
3,759,637	+				-0.2
3,759,640	-				-0.8
3,759,640	-				+0.9
3,759,640	-				+0.3
3,759,640	-				+0.4
3,759,640	-				+0.9
3,759,640	-				-0.5
3,759,640	-				-2.3
3,759,640	-				+1.5
3,759,640	-				+0.6
3,759,640	-				-1.0
3,759,645	-				+0.3
3,759,645	-				+1.2
3,759,645	-				+1.9
3,759,645	-				+0.0
3,759,645	-				+1.1
3,759,663	-		GFF3717	0.11	+0.2
3,759,672	-		GFF3717	0.13	+0.2
3,759,676	-		GFF3717	0.13	-0.2
3,759,721	-		GFF3717	0.22	-1.9
3,759,754	+		GFF3717	0.28	+0.1
3,759,765	+		GFF3717	0.30	-1.7
3,759,777	+		GFF3717	0.32	+1.1
3,759,786	-		GFF3717	0.34	-0.1
3,759,787	+		GFF3717	0.34	-1.4
3,759,787	+		GFF3717	0.34	-0.1
3,759,835	+		GFF3717	0.42	+0.4
3,759,841	+		GFF3717	0.44	+0.7
3,759,843	-		GFF3717	0.44	+0.5
3,759,848	+		GFF3717	0.45	+2.5
3,759,848	+		GFF3717	0.45	-1.2
3,759,848	+		GFF3717	0.45	+1.0
3,759,851	-		GFF3717	0.45	+0.9
3,759,853	+		GFF3717	0.46	+1.2
3,759,853	+		GFF3717	0.46	+0.1
3,759,856	-		GFF3717	0.46	-1.7
3,759,856	-		GFF3717	0.46	+0.8
3,759,861	-		GFF3717	0.47	-0.3
3,759,861	-		GFF3717	0.47	+0.3
3,759,861	-		GFF3717	0.47	+1.0
3,759,861	-		GFF3717	0.47	-0.3
3,759,861	-		GFF3717	0.47	-2.1
3,759,861	-		GFF3717	0.47	+1.2
3,759,861	-		GFF3717	0.47	-1.6
3,759,877	+		GFF3717	0.50	-0.7
3,759,926	-		GFF3717	0.59	-0.0
3,759,932	+		GFF3717	0.60	-0.3
3,759,990	-		GFF3717	0.71	+0.4
3,759,990	-		GFF3717	0.71	+0.0
3,760,002	+		GFF3717	0.73	-1.4
3,760,022	+		GFF3717	0.77	-0.5
3,760,037	-		GFF3717	0.79	-1.4
3,760,073	+		GFF3717	0.86	+0.0
3,760,081	-		GFF3717	0.87	-1.1
3,760,103	+				+0.1
3,760,113	+				+0.8
3,760,165	+				+0.5
3,760,191	+				-0.6
3,760,198	+				+0.3
3,760,206	+				-0.1
3,760,206	+				+1.6
3,760,206	-				+0.2
3,760,216	+				-1.4
3,760,254	+		GFF3718	0.21	-0.4
3,760,256	+		GFF3718	0.22	+0.2
3,760,258	+		GFF3718	0.22	+0.3
3,760,259	+		GFF3718	0.23	-1.6
3,760,259	+		GFF3718	0.23	+0.3
3,760,259	+		GFF3718	0.23	+0.4
3,760,266	-		GFF3718	0.25	-0.4
3,760,266	-		GFF3718	0.25	+0.3
3,760,292	+		GFF3718	0.35	-0.4
3,760,316	+		GFF3718	0.43	+0.8
3,760,334	-		GFF3718	0.50	-0.2
3,760,334	-		GFF3718	0.50	-0.7
3,760,334	-		GFF3718	0.50	+0.5
3,760,334	-		GFF3718	0.50	+0.4
3,760,359	-		GFF3718	0.59	-1.2
3,760,364	-		GFF3718	0.61	-1.5
3,760,384	+		GFF3718	0.68	-0.6
3,760,384	+		GFF3718	0.68	+1.0
3,760,384	+		GFF3718	0.68	-0.2
3,760,384	+		GFF3718	0.68	-0.7
3,760,384	+		GFF3718	0.68	-0.7
3,760,392	-		GFF3718	0.71	+1.3
3,760,392	-		GFF3718	0.71	+0.6
3,760,392	-		GFF3718	0.71	+0.1
3,760,392	-		GFF3718	0.71	-1.1
3,760,400	+		GFF3718	0.74	-0.7
3,760,408	+		GFF3718	0.77	-1.6
3,760,408	-		GFF3718	0.77	-0.2
3,760,460	-				+0.6
3,760,472	+				-0.7
3,760,478	-				-1.0
3,760,483	-				-0.5
3,760,500	+				+0.3
3,760,505	+				-0.1
3,760,510	+				+0.3
3,760,510	+				-1.3
3,760,510	+				-1.8
3,760,513	-				+0.4
3,760,513	-				+0.2
3,760,518	-				-1.4
3,760,519	-		GFF3719	0.10	-1.7