Strain Fitness in Sphingobium sp. HT1-2 around GFF3650

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,692,210	+		GFF3648	0.61	-0.2
3,692,210	-		GFF3648	0.61	-0.7
3,692,217	+		GFF3648	0.62	-1.7
3,692,217	+		GFF3648	0.62	-1.4
3,692,217	+		GFF3648	0.62	+0.5
3,692,217	+		GFF3648	0.62	-1.4
3,692,217	+		GFF3648	0.62	+0.5
3,692,218	+		GFF3648	0.62	-0.3
3,692,218	-		GFF3648	0.62	-0.6
3,692,223	-		GFF3648	0.63	+1.3
3,692,225	-		GFF3648	0.63	-2.0
3,692,225	-		GFF3648	0.63	-1.0
3,692,225	-		GFF3648	0.63	-0.5
3,692,262	-		GFF3648	0.67	-0.5
3,692,262	-		GFF3648	0.67	-0.0
3,692,289	+		GFF3648	0.70	-0.1
3,692,297	-		GFF3648	0.71	-1.4
3,692,297	-		GFF3648	0.71	-0.9
3,692,297	-		GFF3648	0.71	-0.3
3,692,304	+		GFF3648	0.72	-0.2
3,692,310	-		GFF3648	0.72	+0.6
3,692,312	-		GFF3648	0.73	+0.1
3,692,329	+		GFF3648	0.74	+0.0
3,692,329	+		GFF3648	0.74	+0.1
3,692,329	+		GFF3648	0.74	-0.0
3,692,337	+		GFF3648	0.75	+0.9
3,692,337	-		GFF3648	0.75	+1.6
3,692,337	-		GFF3648	0.75	-0.1
3,692,337	-		GFF3648	0.75	-0.1
3,692,339	+		GFF3648	0.76	+1.7
3,692,345	-		GFF3648	0.76	+0.9
3,692,345	-		GFF3648	0.76	+1.3
3,692,345	-		GFF3648	0.76	-0.2
3,692,407	+		GFF3648	0.83	+0.5
3,692,430	+		GFF3648	0.86	-0.3
3,692,433	-		GFF3648	0.86	-0.7
3,692,450	-		GFF3648	0.88	+0.4
3,692,476	+				-0.5
3,692,485	+				-1.3
3,692,513	+				-0.7
3,692,513	+				+0.2
3,692,518	+				-0.4
3,692,521	-				+0.0
3,692,521	-				-0.5
3,692,523	+				-0.8
3,692,526	-				-1.7
3,692,531	-				-1.7
3,692,531	-				+0.1
3,692,544	-				+0.3
3,692,553	+				-1.0
3,692,569	-				-0.6
3,692,576	+				+0.3
3,692,576	+				-1.5
3,692,576	+				-0.4
3,692,576	+				-0.6
3,692,576	+				-0.7
3,692,576	+				-0.6
3,692,584	-				+1.9
3,692,584	-				+0.4
3,692,584	-				-0.9
3,692,584	-				-1.3
3,692,584	-				+0.7
3,692,584	-				-0.4
3,692,584	-				-0.6
3,692,584	-				-0.7
3,692,584	-				-0.1
3,692,584	-				+0.4
3,692,584	-				+0.5
3,692,584	-				-0.4
3,692,584	-				-0.0
3,692,584	-				+0.0
3,692,617	-		GFF3649	0.13	+0.7
3,692,635	+		GFF3649	0.17	-0.7
3,692,671	+		GFF3649	0.25	-1.1
3,692,679	+		GFF3649	0.26	-1.8
3,692,680	+		GFF3649	0.26	-0.6
3,692,688	-		GFF3649	0.28	-1.6
3,692,718	+		GFF3649	0.35	-1.8
3,692,721	-		GFF3649	0.35	+0.2
3,692,723	+		GFF3649	0.36	+1.5
3,692,773	+		GFF3649	0.46	+1.2
3,692,773	+		GFF3649	0.46	+0.6
3,692,773	+		GFF3649	0.46	-0.3
3,692,773	+		GFF3649	0.46	-0.1
3,692,781	-		GFF3649	0.48	-1.5
3,692,781	-		GFF3649	0.48	-1.2
3,692,781	-		GFF3649	0.48	-0.1
3,692,784	+		GFF3649	0.49	+0.1
3,692,807	-		GFF3649	0.54	-0.4
3,692,821	-		GFF3649	0.57	-1.8
3,692,829	+		GFF3649	0.58	+0.6
3,692,829	+		GFF3649	0.58	+0.9
3,692,829	+		GFF3649	0.58	+0.6
3,692,829	+		GFF3649	0.58	-1.8
3,692,829	+		GFF3649	0.58	-0.7
3,692,837	+		GFF3649	0.60	-1.1
3,692,837	-		GFF3649	0.60	-1.5
3,692,837	-		GFF3649	0.60	-0.4
3,692,837	-		GFF3649	0.60	-1.4
3,692,837	-		GFF3649	0.60	-1.8
3,692,837	-		GFF3649	0.60	+0.2
3,692,837	-		GFF3649	0.60	+1.2
3,692,837	-		GFF3649	0.60	-0.6
3,692,837	-		GFF3649	0.60	-0.3
3,692,837	-		GFF3649	0.60	-1.7
3,692,839	+		GFF3649	0.60	-1.2
3,692,839	+		GFF3649	0.60	-1.7
3,692,842	-		GFF3649	0.61	-1.3
3,692,845	-		GFF3649	0.62	+0.1
3,692,845	-		GFF3649	0.62	-0.6
3,692,847	-		GFF3649	0.62	-0.1
3,692,847	-		GFF3649	0.62	+0.4
3,692,847	-		GFF3649	0.62	+0.8
3,692,847	-		GFF3649	0.62	+0.3
3,692,847	-		GFF3649	0.62	-0.6
3,692,847	-		GFF3649	0.62	+0.6
3,692,872	+		GFF3649	0.68	+0.8
3,692,880	-		GFF3649	0.69	+0.5
3,692,880	-		GFF3649	0.69	+0.2
3,692,910	+		GFF3649	0.76	+0.2
3,692,915	+		GFF3649	0.77	-1.5
3,692,918	-		GFF3649	0.77	-1.6
3,692,923	-		GFF3649	0.78	-1.1
3,692,937	-		GFF3649	0.81	+0.1
3,692,937	-		GFF3649	0.81	-1.3
3,692,939	-		GFF3649	0.82	-0.4
3,692,992	+				+0.8
3,692,992	+				+0.1
3,693,017	+				-2.0
3,693,030	-				+0.9
3,693,035	-				+1.0
3,693,058	+				+0.5
3,693,058	+				+0.3
3,693,068	+				-0.1
3,693,080	+				-1.4
3,693,086	+				-1.5
3,693,106	+				-1.4
3,693,130	+				+0.6
3,693,133	-				-1.9
3,693,139	+				+0.7
3,693,149	+				+1.7
3,693,152	-				-1.5
3,693,157	-				-0.5
3,693,167	+				+2.0
3,693,171	-				+0.8
3,693,188	-				-2.2
3,693,204	+				-1.3
3,693,210	-				-1.4
3,693,212	-				-1.1
3,693,247	+				-2.0
3,693,247	+				+0.5
3,693,253	+				+0.3
3,693,255	-				-2.1
3,693,280	+				-2.1
3,693,280	+				-1.7
3,693,287	+				-1.5
3,693,288	-				-0.6
3,693,295	+				+0.0
3,693,295	-				-1.0
3,693,300	+				-0.4
3,693,300	+				-0.4
3,693,302	-				-1.0
3,693,303	-				-0.2
3,693,311	+		GFF3650	0.10	-0.8
3,693,316	+		GFF3650	0.10	+0.5
3,693,316	+		GFF3650	0.10	-0.2
3,693,316	+		GFF3650	0.10	-1.1
3,693,316	+		GFF3650	0.10	-1.1
3,693,316	+		GFF3650	0.10	+0.7
3,693,321	+		GFF3650	0.11	+0.2
3,693,321	+		GFF3650	0.11	+0.3
3,693,321	+		GFF3650	0.11	-0.0
3,693,324	-		GFF3650	0.11	-1.5
3,693,324	-		GFF3650	0.11	+0.9
3,693,324	-		GFF3650	0.11	-0.5
3,693,324	-		GFF3650	0.11	-1.8
3,693,324	-		GFF3650	0.11	+1.2
3,693,390	-		GFF3650	0.17	-1.1
3,693,417	+		GFF3650	0.20	+1.3
3,693,426	+		GFF3650	0.20	-0.9
3,693,426	+		GFF3650	0.20	-0.1
3,693,426	+		GFF3650	0.20	-0.1
3,693,426	+		GFF3650	0.20	-0.9
3,693,433	+		GFF3650	0.21	-0.1
3,693,434	-		GFF3650	0.21	-1.0
3,693,434	-		GFF3650	0.21	+0.0
3,693,434	-		GFF3650	0.21	-1.1
3,693,435	-		GFF3650	0.21	-0.1
3,693,458	-		GFF3650	0.23	+0.8
3,693,460	+		GFF3650	0.23	-2.4
3,693,468	+		GFF3650	0.24	+0.0
3,693,468	+		GFF3650	0.24	+0.3
3,693,469	+		GFF3650	0.24	-2.0
3,693,469	+		GFF3650	0.24	-0.5
3,693,469	+		GFF3650	0.24	+0.0
3,693,476	-		GFF3650	0.25	+0.6
3,693,477	-		GFF3650	0.25	-1.4
3,693,484	-		GFF3650	0.26	-1.3
3,693,502	+		GFF3650	0.27	+1.2
3,693,505	-		GFF3650	0.27	+0.2
3,693,505	-		GFF3650	0.27	-0.6
3,693,510	-		GFF3650	0.28	+0.3
3,693,510	-		GFF3650	0.28	-1.6
3,693,517	-		GFF3650	0.28	+0.7
3,693,524	+		GFF3650	0.29	-0.5
3,693,524	+		GFF3650	0.29	-0.3
3,693,532	-		GFF3650	0.30	-0.9
3,693,532	-		GFF3650	0.30	-0.0
3,693,537	-		GFF3650	0.30	-2.8
3,693,585	+		GFF3650	0.35	+0.7
3,693,591	-		GFF3650	0.35	+0.2
3,693,598	+		GFF3650	0.36	-1.1
3,693,617	+		GFF3650	0.37	-0.1
3,693,622	+		GFF3650	0.38	+0.6
3,693,622	+		GFF3650	0.38	+1.6
3,693,629	-		GFF3650	0.39	+0.5
3,693,651	+		GFF3650	0.41	+0.7
3,693,655	+		GFF3650	0.41	-0.8
3,693,663	-		GFF3650	0.42	-1.7
3,693,675	+		GFF3650	0.43	-1.0
3,693,675	+		GFF3650	0.43	-1.7
3,693,683	-		GFF3650	0.43	+0.1
3,693,683	-		GFF3650	0.43	+0.2
3,693,683	-		GFF3650	0.43	-0.5
3,693,683	-		GFF3650	0.43	+1.1
3,693,716	-		GFF3650	0.46	-1.7
3,693,717	-		GFF3650	0.46	+0.3
3,693,756	-		GFF3650	0.50	-1.5
3,693,770	+		GFF3650	0.51	-0.7
3,693,797	+		GFF3650	0.54	+0.9
3,693,797	+		GFF3650	0.54	-1.8
3,693,797	+		GFF3650	0.54	-1.6
3,693,827	+		GFF3650	0.56	-0.6
3,693,863	+		GFF3650	0.59	-1.1
3,693,863	+		GFF3650	0.59	+0.3
3,693,863	+		GFF3650	0.59	-0.3
3,693,916	-		GFF3650	0.64	+0.7
3,693,921	-		GFF3650	0.65	+1.0
3,693,929	+		GFF3650	0.65	+0.1
3,693,931	+		GFF3650	0.66	+1.1
3,693,945	+		GFF3650	0.67	+0.9
3,693,945	+		GFF3650	0.67	+0.0
3,693,945	+		GFF3650	0.67	-0.4
3,693,950	+		GFF3650	0.67	+0.3
3,693,950	+		GFF3650	0.67	-1.2
3,693,953	-		GFF3650	0.68	-1.2
3,693,958	-		GFF3650	0.68	-0.6
3,693,958	-		GFF3650	0.68	-0.7
3,693,958	-		GFF3650	0.68	+0.3
3,693,960	+		GFF3650	0.68	-2.1
3,693,960	+		GFF3650	0.68	-1.7
3,693,960	+		GFF3650	0.68	-0.8
3,693,960	+		GFF3650	0.68	+1.2
3,693,968	-		GFF3650	0.69	-2.0
3,693,968	-		GFF3650	0.69	+0.0
3,693,968	-		GFF3650	0.69	-2.8
3,693,968	-		GFF3650	0.69	-0.5
3,693,968	-		GFF3650	0.69	-0.3
3,693,968	-		GFF3650	0.69	-1.8
3,693,968	-		GFF3650	0.69	+0.3
3,693,975	+		GFF3650	0.70	+0.7
3,693,976	-		GFF3650	0.70	+0.1
3,693,980	+		GFF3650	0.70	+1.3
3,693,985	+		GFF3650	0.70	+0.3
3,693,985	+		GFF3650	0.70	-1.5
3,693,985	+		GFF3650	0.70	-0.9
3,693,985	+		GFF3650	0.70	-1.1
3,693,985	+		GFF3650	0.70	+0.2
3,693,985	+		GFF3650	0.70	-0.7
3,693,993	-		GFF3650	0.71	-2.4
3,693,993	-		GFF3650	0.71	+0.1
3,693,993	-		GFF3650	0.71	-1.8
3,694,036	+		GFF3650	0.75	-0.1
3,694,042	+		GFF3650	0.76	+0.5
3,694,046	+		GFF3650	0.76	-1.6
3,694,057	+		GFF3650	0.77	-2.0
3,694,081	-		GFF3650	0.79	-0.2
3,694,119	+		GFF3650	0.82	-0.5
3,694,122	-		GFF3650	0.83	-0.2
3,694,127	+		GFF3650	0.83	+0.9
3,694,127	-		GFF3650	0.83	-0.1
3,694,127	-		GFF3650	0.83	-0.9
3,694,135	-		GFF3650	0.84	+1.4
3,694,137	+		GFF3650	0.84	-0.6
3,694,140	-		GFF3650	0.84	-0.6
3,694,142	+		GFF3650	0.84	-0.2
3,694,164	+		GFF3650	0.86	-0.7
3,694,174	+		GFF3650	0.87	-0.7
3,694,177	-		GFF3650	0.88	-1.5
3,694,205	+				+0.8
3,694,205	+				-0.2
3,694,205	+				-1.5
3,694,205	+				-0.2
3,694,205	+				-0.7
3,694,205	+				-1.1
3,694,205	+				-0.4
3,694,213	-				-1.3
3,694,224	+				-0.5
3,694,250	+				-0.5
3,694,251	+				+0.2
3,694,251	+				-0.1
3,694,251	+				+0.5
3,694,251	+				+0.9
3,694,258	-				-0.3
3,694,259	-				-0.6
3,694,269	-				-1.1
3,694,270	+				-1.1
3,694,271	+				-0.7
3,694,271	+				-0.4
3,694,271	+				-0.2
3,694,278	-				+0.3
3,694,279	-				-1.1
3,694,279	-				-0.8
3,694,281	+				-0.3
3,694,281	+				-0.4
3,694,281	+				-0.4
3,694,281	+				-1.2
3,694,281	+				+0.0
3,694,281	+				-0.8
3,694,281	+				-0.4
3,694,281	+				-1.0
3,694,281	+				-1.3
3,694,281	+				+0.4
3,694,281	+				+0.0
3,694,281	+				-0.5
3,694,281	+				-1.1
3,694,281	+				-0.5
3,694,281	+				+0.5
3,694,281	+				-0.8
3,694,281	+				-1.2
3,694,281	+				+0.5
3,694,281	+				-1.5
3,694,281	+				-0.3
3,694,281	+				+0.3
3,694,281	+				+0.1
3,694,281	+				-1.7
3,694,281	+				+0.2
3,694,281	+				-0.8
3,694,281	+				-0.3
3,694,281	+				+1.3
3,694,281	+				-0.5
3,694,281	+				-1.1
3,694,281	+				-0.3
3,694,281	+				-1.3
3,694,281	+				+0.5
3,694,281	+				+0.5
3,694,281	+				+0.3
3,694,281	+				+0.7
3,694,281	+				-1.1
3,694,281	+				-0.3
3,694,281	+				-0.3
3,694,281	+				+0.2
3,694,281	+				-0.1
3,694,281	+				+0.3
3,694,281	+				-0.1
3,694,281	+				-1.0
3,694,281	+				-0.1
3,694,281	+				+0.4
3,694,281	+				+0.1
3,694,281	+				+0.2
3,694,281	+				-1.8
3,694,281	+				-0.7
3,694,289	-				-0.3
3,694,289	-				+0.3
3,694,289	-				-0.2
3,694,289	-				-0.1
3,694,289	-				+0.3
3,694,289	-				-1.1
3,694,289	-				+0.1
3,694,289	-				-1.4
3,694,289	-				-0.3
3,694,289	-				-0.4
3,694,289	-				-0.1
3,694,289	-				-0.3
3,694,289	-				-1.4
3,694,289	-				+0.1
3,694,289	-				-1.8
3,694,289	-				-1.3
3,694,289	-				-1.1
3,694,289	-				+0.2
3,694,289	-				+0.4
3,694,289	-				-0.7
3,694,289	-				-1.7
3,694,289	-				-0.5
3,694,289	-				+0.0
3,694,289	-				-0.5
3,694,289	-				-1.2
3,694,289	-				-0.9
3,694,289	-				-0.6
3,694,289	-				-0.1
3,694,289	-				+0.4
3,694,289	-				+0.8
3,694,289	-				-1.1
3,694,289	-				+0.2
3,694,289	-				-1.8
3,694,289	-				-0.3
3,694,289	-				-1.7
3,694,289	-				+1.0
3,694,289	-				-0.9
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