Strain Fitness in Sphingobium sp. HT1-2 around GFF3647

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,690,435	-		GFF3646	0.32	-1.9
3,690,471	+		GFF3646	0.35	-0.2
3,690,471	+		GFF3646	0.35	-0.8
3,690,471	+		GFF3646	0.35	-1.1
3,690,471	+		GFF3646	0.35	-0.2
3,690,471	+		GFF3646	0.35	-2.5
3,690,473	+		GFF3646	0.35	-0.7
3,690,479	-		GFF3646	0.36	+0.1
3,690,479	-		GFF3646	0.36	+0.3
3,690,479	-		GFF3646	0.36	-2.2
3,690,479	-		GFF3646	0.36	-0.7
3,690,479	-		GFF3646	0.36	+0.4
3,690,481	-		GFF3646	0.36	-0.6
3,690,481	-		GFF3646	0.36	+1.2
3,690,507	-		GFF3646	0.38	+0.1
3,690,511	-		GFF3646	0.39	+0.4
3,690,526	-		GFF3646	0.40	-2.4
3,690,526	-		GFF3646	0.40	+1.1
3,690,528	-		GFF3646	0.40	+0.2
3,690,547	-		GFF3646	0.42	-2.1
3,690,559	+		GFF3646	0.43	+1.7
3,690,562	-		GFF3646	0.43	-0.6
3,690,564	+		GFF3646	0.43	+0.2
3,690,567	-		GFF3646	0.43	-0.5
3,690,572	-		GFF3646	0.44	-0.4
3,690,572	-		GFF3646	0.44	-0.6
3,690,588	+		GFF3646	0.45	+0.9
3,690,588	-		GFF3646	0.45	-0.3
3,690,592	+		GFF3646	0.45	-1.3
3,690,596	-		GFF3646	0.46	+0.3
3,690,608	+		GFF3646	0.47	-0.1
3,690,610	-		GFF3646	0.47	-0.8
3,690,616	+		GFF3646	0.47	+1.3
3,690,616	+		GFF3646	0.47	-0.3
3,690,616	+		GFF3646	0.47	-2.1
3,690,616	+		GFF3646	0.47	+0.5
3,690,616	+		GFF3646	0.47	+0.2
3,690,616	+		GFF3646	0.47	-2.2
3,690,616	+		GFF3646	0.47	-0.4
3,690,616	+		GFF3646	0.47	-1.3
3,690,616	+		GFF3646	0.47	-0.1
3,690,616	+		GFF3646	0.47	+0.7
3,690,621	+		GFF3646	0.48	+1.8
3,690,621	+		GFF3646	0.48	-0.9
3,690,621	+		GFF3646	0.48	+0.3
3,690,621	+		GFF3646	0.48	-0.9
3,690,621	+		GFF3646	0.48	-0.6
3,690,621	+		GFF3646	0.48	-1.8
3,690,621	+		GFF3646	0.48	-0.6
3,690,621	+		GFF3646	0.48	-0.0
3,690,621	+		GFF3646	0.48	-1.7
3,690,624	-		GFF3646	0.48	-1.1
3,690,624	-		GFF3646	0.48	-0.2
3,690,624	-		GFF3646	0.48	+1.3
3,690,624	-		GFF3646	0.48	-0.3
3,690,624	-		GFF3646	0.48	+0.8
3,690,626	+		GFF3646	0.48	-0.4
3,690,626	+		GFF3646	0.48	-0.6
3,690,626	+		GFF3646	0.48	-0.7
3,690,626	+		GFF3646	0.48	-0.4
3,690,626	+		GFF3646	0.48	+0.7
3,690,626	+		GFF3646	0.48	+0.3
3,690,626	+		GFF3646	0.48	+0.3
3,690,626	+		GFF3646	0.48	-0.7
3,690,626	+		GFF3646	0.48	-1.1
3,690,626	+		GFF3646	0.48	-1.1
3,690,626	+		GFF3646	0.48	-0.5
3,690,626	+		GFF3646	0.48	-0.1
3,690,628	+		GFF3646	0.48	-0.8
3,690,629	-		GFF3646	0.48	+1.7
3,690,629	-		GFF3646	0.48	+0.6
3,690,629	-		GFF3646	0.48	+0.3
3,690,629	-		GFF3646	0.48	-1.1
3,690,629	-		GFF3646	0.48	-2.1
3,690,629	-		GFF3646	0.48	+1.4
3,690,629	-		GFF3646	0.48	+0.7
3,690,629	-		GFF3646	0.48	-0.7
3,690,629	-		GFF3646	0.48	-1.2
3,690,629	-		GFF3646	0.48	-1.1
3,690,629	-		GFF3646	0.48	+1.2
3,690,629	-		GFF3646	0.48	+0.6
3,690,629	-		GFF3646	0.48	-1.1
3,690,629	-		GFF3646	0.48	+0.7
3,690,631	+		GFF3646	0.49	-0.9
3,690,634	-		GFF3646	0.49	+0.3
3,690,634	-		GFF3646	0.49	+0.0
3,690,634	-		GFF3646	0.49	+0.5
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	+1.0
3,690,634	-		GFF3646	0.49	-0.6
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	-2.2
3,690,634	-		GFF3646	0.49	-1.3
3,690,634	-		GFF3646	0.49	-1.4
3,690,634	-		GFF3646	0.49	+0.3
3,690,634	-		GFF3646	0.49	+0.6
3,690,634	-		GFF3646	0.49	-1.3
3,690,634	-		GFF3646	0.49	-0.4
3,690,634	-		GFF3646	0.49	+0.3
3,690,634	-		GFF3646	0.49	+0.6
3,690,653	+		GFF3646	0.50	-0.3
3,690,653	+		GFF3646	0.50	-2.4
3,690,661	-		GFF3646	0.51	+1.0
3,690,667	+		GFF3646	0.52	-1.1
3,690,675	-		GFF3646	0.52	+0.6
3,690,675	-		GFF3646	0.52	+0.5
3,690,701	-		GFF3646	0.54	+1.8
3,690,706	-		GFF3646	0.55	-1.5
3,690,722	+		GFF3646	0.56	-1.7
3,690,727	+		GFF3646	0.57	+1.5
3,690,734	+		GFF3646	0.57	+0.3
3,690,734	+		GFF3646	0.57	-0.5
3,690,734	+		GFF3646	0.57	-0.1
3,690,734	+		GFF3646	0.57	+0.6
3,690,734	+		GFF3646	0.57	-0.4
3,690,734	+		GFF3646	0.57	+0.4
3,690,734	+		GFF3646	0.57	-0.1
3,690,734	+		GFF3646	0.57	-1.3
3,690,734	+		GFF3646	0.57	-0.2
3,690,742	-		GFF3646	0.58	-0.6
3,690,742	-		GFF3646	0.58	+0.2
3,690,742	-		GFF3646	0.58	+1.0
3,690,742	-		GFF3646	0.58	+0.2
3,690,742	-		GFF3646	0.58	+0.5
3,690,742	-		GFF3646	0.58	-1.3
3,690,742	-		GFF3646	0.58	-0.1
3,690,742	-		GFF3646	0.58	-2.1
3,690,742	-		GFF3646	0.58	-0.4
3,690,742	-		GFF3646	0.58	-1.4
3,690,742	-		GFF3646	0.58	-0.3
3,690,742	-		GFF3646	0.58	-2.5
3,690,742	-		GFF3646	0.58	+0.1
3,690,742	-		GFF3646	0.58	+0.5
3,690,742	-		GFF3646	0.58	+0.7
3,690,742	-		GFF3646	0.58	+0.8
3,690,742	-		GFF3646	0.58	-1.8
3,690,744	+		GFF3646	0.58	+0.6
3,690,744	+		GFF3646	0.58	-2.1
3,690,744	+		GFF3646	0.58	-2.4
3,690,744	+		GFF3646	0.58	+0.6
3,690,744	+		GFF3646	0.58	-0.2
3,690,744	+		GFF3646	0.58	+0.7
3,690,744	+		GFF3646	0.58	-0.6
3,690,744	+		GFF3646	0.58	-0.8
3,690,744	+		GFF3646	0.58	-0.8
3,690,744	+		GFF3646	0.58	-2.1
3,690,744	+		GFF3646	0.58	+1.1
3,690,744	+		GFF3646	0.58	-0.4
3,690,744	+		GFF3646	0.58	-0.3
3,690,744	+		GFF3646	0.58	-2.5
3,690,744	+		GFF3646	0.58	-0.1
3,690,747	-		GFF3646	0.58	-0.6
3,690,752	-		GFF3646	0.59	-0.3
3,690,752	-		GFF3646	0.59	-0.8
3,690,752	-		GFF3646	0.59	+1.2
3,690,752	-		GFF3646	0.59	+0.3
3,690,752	-		GFF3646	0.59	-0.1
3,690,752	-		GFF3646	0.59	-1.2
3,690,752	-		GFF3646	0.59	+0.7
3,690,752	-		GFF3646	0.59	-0.2
3,690,752	-		GFF3646	0.59	+0.4
3,690,752	-		GFF3646	0.59	+0.3
3,690,752	-		GFF3646	0.59	-1.9
3,690,752	-		GFF3646	0.59	+0.7
3,690,752	-		GFF3646	0.59	-1.8
3,690,752	-		GFF3646	0.59	+0.7
3,690,752	-		GFF3646	0.59	+0.5
3,690,752	-		GFF3646	0.59	+0.6
3,690,755	-		GFF3646	0.59	+1.0
3,690,757	+		GFF3646	0.59	-2.1
3,690,757	+		GFF3646	0.59	-0.8
3,690,757	+		GFF3646	0.59	-1.7
3,690,757	+		GFF3646	0.59	+0.3
3,690,757	+		GFF3646	0.59	+0.6
3,690,757	+		GFF3646	0.59	-0.8
3,690,757	+		GFF3646	0.59	-2.3
3,690,757	+		GFF3646	0.59	+0.2
3,690,757	+		GFF3646	0.59	-1.5
3,690,757	+		GFF3646	0.59	-0.4
3,690,764	-		GFF3646	0.60	+0.7
3,690,765	-		GFF3646	0.60	-0.7
3,690,765	-		GFF3646	0.60	+0.5
3,690,765	-		GFF3646	0.60	+1.0
3,690,765	-		GFF3646	0.60	+1.8
3,690,765	-		GFF3646	0.60	-0.1
3,690,765	-		GFF3646	0.60	+0.3
3,690,765	-		GFF3646	0.60	+0.7
3,690,765	-		GFF3646	0.60	-2.0
3,690,765	-		GFF3646	0.60	-0.6
3,690,834	-		GFF3646	0.65	-2.4
3,690,844	+		GFF3646	0.66	+0.3
3,690,844	+		GFF3646	0.66	+0.7
3,690,850	+		GFF3646	0.67	+0.5
3,690,852	-		GFF3646	0.67	-0.8
3,690,869	-		GFF3646	0.68	-0.1
3,690,874	+		GFF3646	0.69	+1.2
3,690,874	-		GFF3646	0.69	+1.0
3,690,874	-		GFF3646	0.69	+0.4
3,690,874	-		GFF3646	0.69	+1.0
3,690,874	-		GFF3646	0.69	+0.3
3,690,875	-		GFF3646	0.69	-1.3
3,690,909	+		GFF3646	0.72	+0.2
3,690,917	-		GFF3646	0.72	+0.0
3,690,934	-		GFF3646	0.74	+0.1
3,690,944	+		GFF3646	0.75	-1.1
3,690,992	-		GFF3646	0.79	+0.4
3,691,029	+		GFF3646	0.82	-2.3
3,691,037	+		GFF3646	0.82	-0.6
3,691,037	+		GFF3646	0.82	-0.3
3,691,037	+		GFF3646	0.82	+0.0
3,691,040	-		GFF3646	0.83	-2.0
3,691,047	+		GFF3646	0.83	-0.8
3,691,052	+		GFF3646	0.84	-0.3
3,691,052	+		GFF3646	0.84	+0.9
3,691,052	+		GFF3646	0.84	-1.7
3,691,055	-		GFF3646	0.84	+0.6
3,691,059	+		GFF3646	0.84	-1.4
3,691,069	+		GFF3646	0.85	+0.2
3,691,078	-		GFF3646	0.86	-0.9
3,691,078	-		GFF3646	0.86	-0.8
3,691,086	-		GFF3646	0.87	-1.0
3,691,086	-		GFF3646	0.87	-0.6
3,691,088	+		GFF3646	0.87	-0.1
3,691,093	+		GFF3646	0.87	+0.5
3,691,093	+		GFF3646	0.87	+0.4
3,691,093	+		GFF3646	0.87	-0.6
3,691,096	-		GFF3646	0.87	+0.9
3,691,101	-		GFF3646	0.88	+0.4
3,691,101	-		GFF3646	0.88	-1.7
3,691,101	-		GFF3646	0.88	+0.7
3,691,101	-		GFF3646	0.88	-1.0
3,691,101	-		GFF3646	0.88	+0.1
3,691,101	-		GFF3646	0.88	-0.9
3,691,101	-		GFF3646	0.88	-0.4
3,691,106	+		GFF3646	0.88	-0.9
3,691,106	+		GFF3646	0.88	-0.6
3,691,106	-		GFF3646	0.88	-1.3
3,691,113	+		GFF3646	0.89	+0.1
3,691,140	-				-0.2
3,691,160	-				-0.1
3,691,160	-				-0.7
3,691,194	+				-0.6
3,691,202	-				-2.2
3,691,210	-				-0.2
3,691,215	+				-0.1
3,691,250	+				-0.6
3,691,262	+				+0.2
3,691,262	+				-1.3
3,691,262	+				+0.9
3,691,262	+				+0.3
3,691,262	-				-0.2
3,691,267	+				+0.7
3,691,269	-				-0.5
3,691,270	-				-0.9
3,691,270	-				-0.5
3,691,272	+				+0.6
3,691,276	+				+0.4
3,691,284	-				-2.4
3,691,284	-				+0.6
3,691,304	+				-0.5
3,691,309	+				+0.6
3,691,312	-				+0.1
3,691,354	-				-0.2
3,691,363	+				+0.6
3,691,363	+				+0.7
3,691,418	+				-0.9
3,691,421	-				+0.7
3,691,609	+				+0.1
3,691,618	+				+0.1
3,691,618	+				-0.8
3,691,623	-				+1.0
3,691,634	-				-1.1
3,691,636	-				-0.8
3,691,653	+				-0.9
3,691,655	+				-1.1
3,691,655	+				-0.1
3,691,661	-				-0.5
3,691,661	-				+0.7
3,691,661	-				-0.5
3,691,661	-				+0.0
3,691,661	-				+0.2
3,691,661	-				-0.9
3,691,663	-				+0.1
3,691,663	-				-0.5
3,691,663	-				+0.1
3,691,663	-				-2.9
3,691,668	-				-1.6
3,691,669	-				-0.8
3,691,673	+				-0.5
3,691,681	-				-0.3
3,691,683	+				-1.5
3,691,692	+				-1.9
3,691,700	-				-1.1
3,691,700	-				-0.0
3,691,702	+				+0.5
3,691,702	+				+0.7
3,691,702	+				-0.4
3,691,703	+				+0.7
3,691,710	-				-1.5
3,691,710	-				-0.8
3,691,710	-				-1.7
3,691,710	-				-0.1
3,691,710	-				-1.1
3,691,741	+				-1.6
3,691,741	+				-1.0
3,691,749	-		GFF3648	0.10	-1.3
3,691,749	-		GFF3648	0.10	-0.8
3,691,756	+		GFF3648	0.11	-0.4
3,691,756	+		GFF3648	0.11	-0.8
3,691,760	+		GFF3648	0.11	-1.4
3,691,765	-		GFF3648	0.12	-0.4
3,691,765	-		GFF3648	0.12	+0.5
3,691,775	-		GFF3648	0.13	-1.0
3,691,778	+		GFF3648	0.13	+0.6
3,691,780	+		GFF3648	0.14	-0.3
3,691,780	+		GFF3648	0.14	+0.5
3,691,781	-		GFF3648	0.14	+0.1
3,691,798	+		GFF3648	0.16	-1.4
3,691,803	+		GFF3648	0.16	-0.5
3,691,812	+		GFF3648	0.17	-2.0
3,691,815	+		GFF3648	0.17	-1.3
3,691,828	-		GFF3648	0.19	+0.7
3,691,830	+		GFF3648	0.19	-0.1
3,691,830	-		GFF3648	0.19	-0.4
3,691,835	+		GFF3648	0.20	+0.3
3,691,853	-		GFF3648	0.22	-2.0
3,691,853	-		GFF3648	0.22	-1.3
3,691,901	+		GFF3648	0.27	+0.1
3,691,906	+		GFF3648	0.28	-1.3
3,691,907	+		GFF3648	0.28	+0.2
3,691,909	-		GFF3648	0.28	+0.7
3,691,921	-		GFF3648	0.29	-1.9
3,691,927	+		GFF3648	0.30	-0.3
3,691,937	-		GFF3648	0.31	+0.3
3,691,942	-		GFF3648	0.32	-0.3
3,691,944	+		GFF3648	0.32	-0.6
3,691,947	+		GFF3648	0.32	-0.9
3,691,955	-		GFF3648	0.33	-0.4
3,691,955	-		GFF3648	0.33	+0.4
3,691,964	-		GFF3648	0.34	-3.1
3,691,965	-		GFF3648	0.34	-0.4
3,691,975	+		GFF3648	0.35	-1.1
3,691,975	+		GFF3648	0.35	+0.4
3,691,983	-		GFF3648	0.36	+0.0
3,692,019	+		GFF3648	0.40	-1.7
3,692,019	+		GFF3648	0.40	-0.7
3,692,024	+		GFF3648	0.41	-1.3
3,692,024	+		GFF3648	0.41	+0.2
3,692,032	-		GFF3648	0.42	+0.8
3,692,035	-		GFF3648	0.42	-0.5
3,692,051	+		GFF3648	0.44	-1.4
3,692,051	+		GFF3648	0.44	-1.0
3,692,051	+		GFF3648	0.44	-0.7
3,692,059	-		GFF3648	0.45	+0.7
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3,692,476	+				-0.5
3,692,485	+				-1.3
3,692,513	+				-0.7
3,692,513	+				+0.2
3,692,518	+				-0.4