Strain Fitness in Sphingobium sp. HT1-2 around GFF3632

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,679,544	+		GFF3630	0.66	+1.4
3,679,563	+		GFF3630	0.69	-1.0
3,679,573	+		GFF3630	0.71	-1.5
3,679,585	-		GFF3630	0.73	-0.8
3,679,624	+		GFF3630	0.79	+0.2
3,679,624	-		GFF3630	0.79	-0.1
3,679,632	-		GFF3630	0.81	+0.1
3,679,632	-		GFF3630	0.81	+1.3
3,679,643	-		GFF3630	0.82	-1.8
3,679,675	+		GFF3630	0.88	-1.4
3,679,679	+		GFF3630	0.88	+1.3
3,679,679	+		GFF3630	0.88	-0.2
3,679,679	+		GFF3630	0.88	-0.2
3,679,679	+		GFF3630	0.88	-1.5
3,679,683	-		GFF3630	0.89	-0.2
3,679,687	-		GFF3630	0.90	+0.4
3,679,687	-		GFF3630	0.90	+0.5
3,679,712	+				+0.9
3,679,712	+				+0.3
3,679,720	-				-1.3
3,679,757	+				+1.3
3,679,757	+				-2.3
3,679,785	-				-0.4
3,679,789	+				-0.8
3,679,805	-				-1.0
3,679,877	+		GFF3631	0.16	+1.0
3,679,879	-		GFF3631	0.17	+0.8
3,679,884	+		GFF3631	0.17	-2.3
3,679,884	+		GFF3631	0.17	-1.2
3,679,884	+		GFF3631	0.17	-0.7
3,679,892	-		GFF3631	0.18	+0.0
3,679,925	-		GFF3631	0.22	+0.4
3,679,940	-		GFF3631	0.24	-2.4
3,679,950	+		GFF3631	0.26	-2.6
3,679,958	+		GFF3631	0.27	-1.0
3,679,958	-		GFF3631	0.27	-1.1
3,679,960	-		GFF3631	0.27	+0.2
3,680,001	+		GFF3631	0.32	-0.6
3,680,009	-		GFF3631	0.33	+0.6
3,680,019	-		GFF3631	0.34	-0.3
3,680,051	-		GFF3631	0.38	-0.1
3,680,086	-		GFF3631	0.43	-1.6
3,680,090	+		GFF3631	0.43	-1.4
3,680,093	-		GFF3631	0.44	-0.4
3,680,095	+		GFF3631	0.44	-0.8
3,680,095	+		GFF3631	0.44	-2.8
3,680,095	+		GFF3631	0.44	-1.7
3,680,095	+		GFF3631	0.44	+0.9
3,680,095	+		GFF3631	0.44	-1.4
3,680,096	-		GFF3631	0.44	+0.5
3,680,103	-		GFF3631	0.45	-1.9
3,680,103	-		GFF3631	0.45	+0.5
3,680,103	-		GFF3631	0.45	+1.1
3,680,103	-		GFF3631	0.45	-0.3
3,680,103	-		GFF3631	0.45	+0.4
3,680,103	-		GFF3631	0.45	-1.1
3,680,120	+		GFF3631	0.47	-1.1
3,680,120	+		GFF3631	0.47	+0.1
3,680,120	+		GFF3631	0.47	+1.1
3,680,120	+		GFF3631	0.47	-0.8
3,680,120	+		GFF3631	0.47	+0.7
3,680,123	-		GFF3631	0.47	-1.0
3,680,128	-		GFF3631	0.48	-0.6
3,680,128	-		GFF3631	0.48	-0.2
3,680,128	-		GFF3631	0.48	-0.1
3,680,128	-		GFF3631	0.48	-1.1
3,680,128	-		GFF3631	0.48	-0.4
3,680,134	-		GFF3631	0.49	-0.1
3,680,138	-		GFF3631	0.49	-1.1
3,680,157	+		GFF3631	0.52	-1.8
3,680,157	+		GFF3631	0.52	-1.2
3,680,171	-		GFF3631	0.54	-0.2
3,680,176	-		GFF3631	0.54	+0.4
3,680,183	+		GFF3631	0.55	+0.4
3,680,191	-		GFF3631	0.56	-1.4
3,680,221	-		GFF3631	0.60	+0.4
3,680,225	-		GFF3631	0.60	-0.3
3,680,258	+		GFF3631	0.65	+0.6
3,680,275	-		GFF3631	0.67	-0.4
3,680,275	-		GFF3631	0.67	+0.2
3,680,295	-		GFF3631	0.69	-0.3
3,680,298	+		GFF3631	0.70	-1.3
3,680,298	+		GFF3631	0.70	+1.2
3,680,298	+		GFF3631	0.70	+0.6
3,680,298	+		GFF3631	0.70	+0.1
3,680,298	+		GFF3631	0.70	-1.8
3,680,298	+		GFF3631	0.70	-1.8
3,680,298	+		GFF3631	0.70	-1.0
3,680,298	+		GFF3631	0.70	+0.0
3,680,300	+		GFF3631	0.70	+0.2
3,680,306	-		GFF3631	0.71	-0.6
3,680,306	-		GFF3631	0.71	-0.8
3,680,308	-		GFF3631	0.71	+0.4
3,680,308	-		GFF3631	0.71	+1.3
3,680,326	-		GFF3631	0.73	-2.2
3,680,330	-		GFF3631	0.74	+0.4
3,680,331	-		GFF3631	0.74	+0.1
3,680,354	-		GFF3631	0.77	-1.2
3,680,371	-		GFF3631	0.79	+0.4
3,680,372	-		GFF3631	0.79	-1.4
3,680,372	-		GFF3631	0.79	-2.1
3,680,374	+		GFF3631	0.79	+0.0
3,680,374	+		GFF3631	0.79	-0.5
3,680,374	+		GFF3631	0.79	+0.5
3,680,420	-		GFF3631	0.85	-1.5
3,680,453	+		GFF3631	0.89	-2.6
3,680,491	-				+1.6
3,680,496	+				+0.0
3,680,496	-				+0.8
3,680,506	+				-1.7
3,680,547	-				-1.4
3,680,549	+				+1.5
3,680,549	+				-0.3
3,680,552	-				+1.0
3,680,552	-				-0.7
3,680,554	+				-0.6
3,680,557	-				-0.4
3,680,557	-				-0.9
3,680,557	-				+0.4
3,680,573	-				+0.3
3,680,580	+				+0.5
3,680,580	+				-2.1
3,680,588	-				-1.6
3,680,594	+				-0.8
3,680,597	-				+0.1
3,680,598	-				+0.5
3,680,598	-				-0.2
3,680,602	-				-0.6
3,680,602	-				+0.1
3,680,611	-				-3.1
3,680,616	-				+0.6
3,680,626	+		GFF3632	0.10	+0.3
3,680,633	-		GFF3632	0.11	-0.6
3,680,634	-		GFF3632	0.11	+0.8
3,680,634	-		GFF3632	0.11	+0.7
3,680,639	-		GFF3632	0.12	-0.3
3,680,690	-		GFF3632	0.18	+1.7
3,680,693	+		GFF3632	0.19	+0.4
3,680,710	+		GFF3632	0.21	+0.8
3,680,715	+		GFF3632	0.21	+0.6
3,680,718	-		GFF3632	0.22	-0.1
3,680,718	-		GFF3632	0.22	-1.1
3,680,718	-		GFF3632	0.22	-0.5
3,680,720	+		GFF3632	0.22	-0.2
3,680,723	-		GFF3632	0.22	-0.7
3,680,725	+		GFF3632	0.22	-0.8
3,680,746	+		GFF3632	0.25	-0.6
3,680,751	+		GFF3632	0.26	-0.5
3,680,754	-		GFF3632	0.26	+0.6
3,680,758	+		GFF3632	0.26	+0.2
3,680,758	+		GFF3632	0.26	-1.3
3,680,759	-		GFF3632	0.27	-0.1
3,680,759	-		GFF3632	0.27	+0.2
3,680,764	-		GFF3632	0.27	-1.3
3,680,766	-		GFF3632	0.27	-0.3
3,680,766	-		GFF3632	0.27	+0.5
3,680,766	-		GFF3632	0.27	-1.1
3,680,809	+		GFF3632	0.33	+0.6
3,680,809	+		GFF3632	0.33	-0.6
3,680,809	+		GFF3632	0.33	+0.3
3,680,814	+		GFF3632	0.33	+0.0
3,680,814	+		GFF3632	0.33	-1.0
3,680,817	-		GFF3632	0.34	+0.0
3,680,817	-		GFF3632	0.34	+0.7
3,680,817	-		GFF3632	0.34	-0.2
3,680,817	-		GFF3632	0.34	-0.5
3,680,817	-		GFF3632	0.34	-1.1
3,680,817	-		GFF3632	0.34	-1.8
3,680,817	-		GFF3632	0.34	+0.4
3,680,817	-		GFF3632	0.34	-0.8
3,680,822	-		GFF3632	0.34	+0.9
3,680,827	-		GFF3632	0.35	+0.3
3,680,827	-		GFF3632	0.35	+0.9
3,680,841	+		GFF3632	0.37	+0.1
3,680,850	-		GFF3632	0.38	+0.1
3,680,859	-		GFF3632	0.39	-0.7
3,680,867	+		GFF3632	0.40	+1.4
3,680,886	+		GFF3632	0.42	-0.8
3,680,894	+		GFF3632	0.43	-0.5
3,680,894	+		GFF3632	0.43	-2.8
3,680,894	+		GFF3632	0.43	-2.8
3,680,894	+		GFF3632	0.43	-2.0
3,680,894	+		GFF3632	0.43	-0.2
3,680,894	+		GFF3632	0.43	+0.7
3,680,894	+		GFF3632	0.43	+0.9
3,680,894	+		GFF3632	0.43	+0.4
3,680,894	+		GFF3632	0.43	+0.4
3,680,894	+		GFF3632	0.43	-0.3
3,680,894	+		GFF3632	0.43	-0.2
3,680,894	+		GFF3632	0.43	-0.4
3,680,898	+		GFF3632	0.44	+0.0
3,680,902	-		GFF3632	0.44	-0.2
3,680,902	-		GFF3632	0.44	-2.1
3,680,902	-		GFF3632	0.44	+0.1
3,680,902	-		GFF3632	0.44	-0.5
3,680,902	-		GFF3632	0.44	+0.6
3,680,902	-		GFF3632	0.44	-0.4
3,680,902	-		GFF3632	0.44	+0.1
3,680,902	-		GFF3632	0.44	-1.7
3,680,902	-		GFF3632	0.44	+0.3
3,680,931	-		GFF3632	0.48	-0.3
3,680,938	+		GFF3632	0.48	+0.3
3,680,946	-		GFF3632	0.49	-0.6
3,680,961	+		GFF3632	0.51	-0.2
3,680,968	+		GFF3632	0.52	-0.6
3,680,981	-		GFF3632	0.54	-2.4
3,681,006	-		GFF3632	0.57	-0.5
3,681,011	-		GFF3632	0.57	-0.0
3,681,021	-		GFF3632	0.59	+0.7
3,681,038	+		GFF3632	0.61	+0.9
3,681,038	+		GFF3632	0.61	-0.7
3,681,038	+		GFF3632	0.61	+0.3
3,681,039	-		GFF3632	0.61	-1.7
3,681,046	-		GFF3632	0.62	-1.2
3,681,046	-		GFF3632	0.62	-0.1
3,681,046	-		GFF3632	0.62	-1.1
3,681,046	-		GFF3632	0.62	-1.5
3,681,054	-		GFF3632	0.63	+0.4
3,681,080	+		GFF3632	0.66	-0.8
3,681,080	+		GFF3632	0.66	-1.1
3,681,080	+		GFF3632	0.66	-0.6
3,681,086	+		GFF3632	0.67	+0.3
3,681,086	+		GFF3632	0.67	+1.1
3,681,086	+		GFF3632	0.67	+0.4
3,681,094	-		GFF3632	0.68	-0.3
3,681,094	-		GFF3632	0.68	+1.7
3,681,094	-		GFF3632	0.68	-0.1
3,681,102	-		GFF3632	0.68	+0.5
3,681,128	-		GFF3632	0.72	-0.3
3,681,137	+		GFF3632	0.73	+0.4
3,681,137	+		GFF3632	0.73	-2.1
3,681,137	+		GFF3632	0.73	+0.0
3,681,137	+		GFF3632	0.73	+0.6
3,681,145	-		GFF3632	0.74	-2.6
3,681,145	-		GFF3632	0.74	+1.7
3,681,145	-		GFF3632	0.74	+0.7
3,681,147	-		GFF3632	0.74	-0.6
3,681,156	+		GFF3632	0.75	-1.2
3,681,156	+		GFF3632	0.75	+0.0
3,681,164	-		GFF3632	0.76	-0.6
3,681,164	-		GFF3632	0.76	-1.7
3,681,164	-		GFF3632	0.76	+0.2
3,681,169	-		GFF3632	0.77	-0.3
3,681,170	+		GFF3632	0.77	+0.5
3,681,183	+		GFF3632	0.78	+0.0
3,681,183	+		GFF3632	0.78	+0.6
3,681,210	-		GFF3632	0.82	-0.3
3,681,218	+		GFF3632	0.83	-1.1
3,681,219	+		GFF3632	0.83	-0.8
3,681,219	+		GFF3632	0.83	-0.4
3,681,245	-		GFF3632	0.86	-0.4
3,681,276	-		GFF3632	0.90	+1.2
3,681,306	-				+0.5
3,681,321	+				-0.6
3,681,321	+				+0.2
3,681,321	+				+0.3
3,681,321	+				-1.7
3,681,329	-				-0.6
3,681,329	-				-2.2
3,681,329	-				-0.7
3,681,329	-				+0.2
3,681,329	-				-1.3
3,681,329	-				-1.7
3,681,331	+				+2.4
3,681,362	-				-2.1
3,681,368	-				+0.9
3,681,437	+				+1.2
3,681,458	-				-0.3
3,681,499	+				-0.6
3,681,561	+				-1.8
3,681,569	+				-1.5
3,681,569	+				-0.4
3,681,574	+				-0.5
3,681,577	-				-2.0
3,681,577	-				-0.4
3,681,577	-				+0.5
3,681,577	-				+0.1
3,681,577	-				-1.6
3,681,577	-				-0.7
3,681,577	-				-0.1
3,681,577	-				+1.0
3,681,577	-				-0.2
3,681,577	-				+0.5
3,681,601	+				-1.2
3,681,618	+				-0.2
3,681,621	+				+0.3
3,681,625	-				-0.1
3,681,626	-				-1.5
3,681,647	+				-2.3
3,681,650	+				-0.3
3,681,653	-				-1.8
3,681,660	+				+0.7
3,681,668	-				-1.7
3,681,673	+				-1.5
3,681,681	-				-0.1
3,681,706	+				-0.4
3,681,709	+				-1.1
3,681,712	-		GFF3633	0.10	-0.7
3,681,714	+		GFF3633	0.11	+0.2
3,681,714	+		GFF3633	0.11	-0.0
3,681,717	-		GFF3633	0.11	-1.1
3,681,722	-		GFF3633	0.11	+0.3
3,681,722	-		GFF3633	0.11	-1.1
3,681,728	+		GFF3633	0.12	+1.0
3,681,729	+		GFF3633	0.12	+0.8
3,681,731	-		GFF3633	0.13	-0.1
3,681,737	-		GFF3633	0.13	-0.8
3,681,742	+		GFF3633	0.14	-0.3
3,681,774	+		GFF3633	0.18	+0.7
3,681,782	-		GFF3633	0.19	+0.3
3,681,786	-		GFF3633	0.19	-0.7
3,681,798	+		GFF3633	0.21	-1.3
3,681,798	+		GFF3633	0.21	-0.7
3,681,802	+		GFF3633	0.21	-0.9
3,681,806	-		GFF3633	0.22	-1.2
3,681,824	+		GFF3633	0.24	+0.3
3,681,824	+		GFF3633	0.24	-1.3
3,681,829	+		GFF3633	0.24	-0.3
3,681,832	-		GFF3633	0.25	-0.4
3,681,856	-		GFF3633	0.27	-1.1
3,681,872	-		GFF3633	0.29	+0.1
3,681,885	+		GFF3633	0.31	-0.3
3,681,888	-		GFF3633	0.31	-0.3
3,681,888	-		GFF3633	0.31	-0.4
3,681,888	-		GFF3633	0.31	-2.1
3,681,888	-		GFF3633	0.31	-1.0
3,681,888	-		GFF3633	0.31	-1.0
3,681,893	-		GFF3633	0.32	+0.6
3,681,894	+		GFF3633	0.32	-0.3
3,681,913	+		GFF3633	0.34	+0.9
3,681,921	-		GFF3633	0.35	-0.1
3,681,921	-		GFF3633	0.35	-1.0
3,681,923	+		GFF3633	0.35	+0.3
3,681,923	+		GFF3633	0.35	-1.4
3,681,923	+		GFF3633	0.35	+0.5
3,681,923	+		GFF3633	0.35	-0.2
3,681,931	-		GFF3633	0.36	+0.1
3,681,931	-		GFF3633	0.36	-1.4
3,681,931	-		GFF3633	0.36	-0.4
3,681,931	-		GFF3633	0.36	+1.8
3,681,954	-		GFF3633	0.39	+0.1
3,681,969	-		GFF3633	0.41	+0.3
3,681,976	+		GFF3633	0.42	-0.4
3,681,987	-		GFF3633	0.43	-1.3
3,682,010	-		GFF3633	0.46	-1.3
3,682,042	-		GFF3633	0.50	+0.3
3,682,042	-		GFF3633	0.50	-0.0
3,682,043	-		GFF3633	0.50	-1.4
3,682,054	+		GFF3633	0.51	-0.1
3,682,061	+		GFF3633	0.52	-0.3
3,682,074	-		GFF3633	0.54	-0.3
3,682,103	-		GFF3633	0.57	+0.2
3,682,119	+		GFF3633	0.59	-0.1
3,682,119	+		GFF3633	0.59	-0.0
3,682,119	+		GFF3633	0.59	-1.4
3,682,126	-		GFF3633	0.60	+0.4
3,682,127	-		GFF3633	0.60	+0.2
3,682,171	+		GFF3633	0.65	-0.6
3,682,171	+		GFF3633	0.65	-0.6
3,682,185	-		GFF3633	0.67	+0.4
3,682,216	+		GFF3633	0.70	-0.8
3,682,221	-		GFF3633	0.71	+0.5
3,682,224	-		GFF3633	0.71	+0.6
3,682,226	-		GFF3633	0.72	+0.3
3,682,226	-		GFF3633	0.72	+0.6
3,682,229	+		GFF3633	0.72	-0.3
3,682,268	-		GFF3633	0.77	-0.1
3,682,280	-		GFF3633	0.78	-0.5
3,682,302	-		GFF3633	0.81	+1.2
3,682,302	-		GFF3633	0.81	-0.2
3,682,304	+		GFF3633	0.81	-0.3
3,682,313	+		GFF3633	0.82	+0.4
3,682,317	-		GFF3633	0.83	+0.6
3,682,328	+		GFF3633	0.84	-0.8
3,682,335	-		GFF3633	0.85	+0.1
3,682,337	+		GFF3633	0.85	-1.6
3,682,337	+		GFF3633	0.85	-1.3
3,682,337	+		GFF3633	0.85	-0.5
3,682,337	+		GFF3633	0.85	-1.7
3,682,345	-		GFF3633	0.86	-0.6
3,682,345	-		GFF3633	0.86	-1.9