Strain Fitness in Sphingobium sp. HT1-2 around GFF3623

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,669,620	-		GFF3621	0.77	-1.4
3,669,620	-		GFF3621	0.77	-0.4
3,669,645	+		GFF3621	0.78	-0.6
3,669,655	+		GFF3621	0.79	-0.4
3,669,655	+		GFF3621	0.79	-0.3
3,669,655	+		GFF3621	0.79	+0.8
3,669,660	+		GFF3621	0.79	-0.0
3,669,660	+		GFF3621	0.79	-0.9
3,669,660	+		GFF3621	0.79	+0.1
3,669,663	-		GFF3621	0.79	-1.5
3,669,668	-		GFF3621	0.79	-0.5
3,669,685	-		GFF3621	0.80	+1.3
3,669,688	+		GFF3621	0.80	-0.3
3,669,689	-		GFF3621	0.81	-0.4
3,669,693	+		GFF3621	0.81	+0.6
3,669,726	-		GFF3621	0.82	-0.3
3,669,728	-		GFF3621	0.82	-1.7
3,669,729	+		GFF3621	0.82	-0.0
3,669,831	-		GFF3621	0.87	+0.4
3,669,832	+		GFF3621	0.87	+1.4
3,669,832	+		GFF3621	0.87	-0.7
3,669,837	+		GFF3621	0.88	-0.3
3,669,840	-		GFF3621	0.88	+0.2
3,669,840	-		GFF3621	0.88	+0.7
3,669,840	-		GFF3621	0.88	+0.9
3,669,842	-		GFF3621	0.88	+0.1
3,669,849	+		GFF3621	0.88	+0.1
3,669,849	+		GFF3621	0.88	-0.3
3,669,850	-		GFF3621	0.88	-1.3
3,669,850	-		GFF3621	0.88	+0.7
3,669,851	+		GFF3621	0.88	+0.5
3,669,851	+		GFF3621	0.88	+0.4
3,669,851	+		GFF3621	0.88	-1.3
3,669,851	+		GFF3621	0.88	-0.7
3,669,851	+		GFF3621	0.88	+0.5
3,669,852	-		GFF3621	0.88	-0.3
3,669,859	-		GFF3621	0.89	+0.7
3,669,859	-		GFF3621	0.89	-1.7
3,669,859	-		GFF3621	0.89	+0.7
3,669,859	-		GFF3621	0.89	-0.2
3,669,859	-		GFF3621	0.89	-0.4
3,669,859	-		GFF3621	0.89	-3.1
3,669,859	-		GFF3621	0.89	-1.3
3,669,867	+		GFF3621	0.89	+0.4
3,669,875	-		GFF3621	0.90	+0.4
3,669,877	+		GFF3621	0.90	+0.2
3,669,906	+				-0.4
3,669,913	+				-0.4
3,669,913	+				+0.4
3,669,914	-				+0.4
3,669,918	+				-0.6
3,669,921	-				-0.3
3,669,926	-				-0.1
3,669,926	-				+0.3
3,669,934	+				+0.9
3,669,942	+				-0.7
3,669,942	+				-0.0
3,669,942	+				+0.0
3,669,955	-				+0.3
3,669,968	+				+1.8
3,669,968	+				-1.4
3,669,973	+				+0.7
3,669,997	+				-0.1
3,669,997	+				+0.6
3,669,997	+				-0.6
3,669,997	+				+0.2
3,670,015	+				+0.7
3,670,024	+				-0.1
3,670,024	+				+1.4
3,670,024	+				-1.0
3,670,026	-				-0.4
3,670,032	-				-1.7
3,670,032	-				-1.5
3,670,032	-				-1.8
3,670,037	-				+0.9
3,670,059	-				+0.5
3,670,082	+				+1.2
3,670,082	+				-0.7
3,670,082	+				-0.2
3,670,083	+				+0.5
3,670,087	+				+1.1
3,670,090	+				-0.3
3,670,090	-				+0.6
3,670,090	-				-1.2
3,670,092	+				-0.0
3,670,092	+				+1.0
3,670,092	+				-0.8
3,670,092	+				-0.8
3,670,092	+				-0.3
3,670,092	+				+0.2
3,670,092	+				-0.0
3,670,092	+				-2.3
3,670,092	+				+0.2
3,670,092	+				-0.1
3,670,092	+				-1.1
3,670,092	+				-0.7
3,670,092	+				-1.3
3,670,092	+				+0.8
3,670,092	+				+0.3
3,670,092	+				-0.6
3,670,092	+				+0.8
3,670,092	+				+0.1
3,670,092	+				-0.7
3,670,092	+				-0.4
3,670,092	+				+0.4
3,670,092	+				+1.3
3,670,097	+				-0.1
3,670,097	+				-2.1
3,670,100	-				-1.1
3,670,100	-				-1.3
3,670,100	-				-0.3
3,670,100	-				-2.6
3,670,100	-				+0.6
3,670,100	-				+0.6
3,670,100	-				-0.9
3,670,100	-				+0.6
3,670,100	-				-2.7
3,670,100	-				+1.0
3,670,100	-				+0.8
3,670,100	-				+0.5
3,670,100	-				+0.2
3,670,100	-				-1.8
3,670,100	-				+1.3
3,670,105	-				-1.2
3,670,105	-				-0.2
3,670,105	-				-0.1
3,670,105	-				-0.1
3,670,105	-				-0.7
3,670,105	-				+0.1
3,670,143	+		GFF3622	0.16	-0.1
3,670,147	+		GFF3622	0.17	+0.1
3,670,148	-		GFF3622	0.17	-1.2
3,670,168	+		GFF3622	0.23	-0.0
3,670,181	+		GFF3622	0.26	+0.4
3,670,181	+		GFF3622	0.26	-0.5
3,670,202	-		GFF3622	0.32	+0.4
3,670,261	-		GFF3622	0.48	-0.6
3,670,276	+		GFF3622	0.53	-1.3
3,670,277	+		GFF3622	0.53	-0.5
3,670,284	-		GFF3622	0.55	+0.4
3,670,284	-		GFF3622	0.55	-0.5
3,670,301	+		GFF3622	0.60	+0.2
3,670,314	+		GFF3622	0.63	-0.4
3,670,331	-		GFF3622	0.68	-0.1
3,670,334	-		GFF3622	0.69	+0.8
3,670,373	+		GFF3622	0.79	-0.9
3,670,373	+		GFF3622	0.79	-0.4
3,670,376	-		GFF3622	0.80	+0.3
3,670,381	-		GFF3622	0.82	-0.1
3,670,406	+		GFF3622	0.88	-0.5
3,670,407	+		GFF3622	0.89	+0.8
3,670,414	+				+0.9
3,670,414	+				+0.9
3,670,414	-				-0.1
3,670,415	-				-1.2
3,670,422	-				-0.2
3,670,436	+				+0.4
3,670,441	+				+1.3
3,670,444	-				+0.9
3,670,444	-				+0.5
3,670,444	-				+1.5
3,670,446	+				+0.6
3,670,448	+				-0.7
3,670,451	-				+0.2
3,670,451	-				+0.8
3,670,454	-				-0.7
3,670,497	-				-1.3
3,670,501	-				-1.5
3,670,508	-				-0.6
3,670,568	+				+0.6
3,670,596	+				-0.7
3,670,604	-				+0.9
3,670,604	-				-0.9
3,670,644	+				-1.0
3,670,647	-				+0.6
3,670,675	-				-0.4
3,670,676	+				-1.6
3,670,684	-				+1.2
3,670,684	-				-0.1
3,670,684	-				-0.3
3,670,684	-				-0.7
3,670,691	+				-0.3
3,670,729	+				+0.4
3,670,729	+				-2.7
3,670,742	+				+0.6
3,670,750	+				+0.2
3,670,750	-				-1.8
3,670,755	-				-1.4
3,670,758	-				+0.7
3,670,758	-				-0.2
3,670,793	+				+0.6
3,670,793	+				-0.6
3,670,793	+				+0.9
3,670,793	+				-0.0
3,670,793	+				+0.3
3,670,793	+				-0.4
3,670,793	+				-0.6
3,670,801	-				-0.2
3,670,801	-				-1.0
3,670,801	-				+1.0
3,670,801	-				-0.4
3,670,801	-				-0.6
3,670,801	-				+0.1
3,670,801	-				-0.3
3,670,801	-				-0.2
3,670,801	-				+0.4
3,670,801	-				+0.7
3,670,811	-				-0.0
3,670,819	-				+0.7
3,670,827	-		GFF3623	0.10	-0.9
3,670,840	+		GFF3623	0.11	-1.8
3,670,849	-		GFF3623	0.11	+0.7
3,670,865	+		GFF3623	0.12	-0.4
3,670,874	+		GFF3623	0.13	+0.2
3,670,882	+		GFF3623	0.13	+0.4
3,670,882	+		GFF3623	0.13	-0.5
3,670,882	+		GFF3623	0.13	+1.1
3,670,882	+		GFF3623	0.13	-0.1
3,670,882	+		GFF3623	0.13	-0.1
3,670,882	+		GFF3623	0.13	+0.2
3,670,882	+		GFF3623	0.13	+1.1
3,670,882	+		GFF3623	0.13	+0.8
3,670,882	+		GFF3623	0.13	-0.5
3,670,887	+		GFF3623	0.13	+0.7
3,670,889	+		GFF3623	0.13	+0.4
3,670,889	+		GFF3623	0.13	-0.4
3,670,889	+		GFF3623	0.13	+0.4
3,670,890	-		GFF3623	0.13	-0.7
3,670,890	-		GFF3623	0.13	+0.3
3,670,890	-		GFF3623	0.13	-0.3
3,670,890	-		GFF3623	0.13	-1.1
3,670,890	-		GFF3623	0.13	+0.9
3,670,890	-		GFF3623	0.13	-1.5
3,670,890	-		GFF3623	0.13	+0.2
3,670,895	-		GFF3623	0.13	+1.5
3,670,897	-		GFF3623	0.14	+0.7
3,670,904	+		GFF3623	0.14	+0.7
3,670,912	-		GFF3623	0.14	-0.4
3,670,957	-		GFF3623	0.16	-1.7
3,670,967	+		GFF3623	0.17	-0.1
3,670,967	-		GFF3623	0.17	-0.1
3,670,967	-		GFF3623	0.17	+0.9
3,670,967	-		GFF3623	0.17	+1.5
3,670,975	-		GFF3623	0.17	-0.0
3,671,002	-		GFF3623	0.18	+0.7
3,671,012	+		GFF3623	0.19	-0.2
3,671,032	+		GFF3623	0.20	-2.1
3,671,084	-		GFF3623	0.22	-0.3
3,671,105	+		GFF3623	0.23	+0.6
3,671,107	+		GFF3623	0.23	+0.3
3,671,112	+		GFF3623	0.24	-0.8
3,671,135	-		GFF3623	0.25	-1.1
3,671,147	-		GFF3623	0.25	-0.4
3,671,149	+		GFF3623	0.25	-0.3
3,671,149	-		GFF3623	0.25	+0.1
3,671,156	+		GFF3623	0.26	+0.1
3,671,164	-		GFF3623	0.26	+0.3
3,671,166	+		GFF3623	0.26	-0.8
3,671,199	-		GFF3623	0.28	-1.6
3,671,223	-		GFF3623	0.29	+0.4
3,671,238	-		GFF3623	0.30	-1.8
3,671,245	-		GFF3623	0.30	+1.5
3,671,261	-		GFF3623	0.31	-0.5
3,671,261	-		GFF3623	0.31	-0.1
3,671,262	+		GFF3623	0.31	-1.6
3,671,263	-		GFF3623	0.31	-0.7
3,671,301	+		GFF3623	0.32	-2.1
3,671,304	-		GFF3623	0.33	-1.1
3,671,306	+		GFF3623	0.33	-0.5
3,671,309	-		GFF3623	0.33	-0.9
3,671,340	-		GFF3623	0.34	+0.5
3,671,342	+		GFF3623	0.34	+0.2
3,671,350	-		GFF3623	0.35	-0.3
3,671,350	-		GFF3623	0.35	-1.1
3,671,350	-		GFF3623	0.35	-1.4
3,671,371	-		GFF3623	0.36	-0.1
3,671,373	+		GFF3623	0.36	-0.3
3,671,373	+		GFF3623	0.36	-0.2
3,671,373	+		GFF3623	0.36	+0.1
3,671,375	+		GFF3623	0.36	+1.0
3,671,375	+		GFF3623	0.36	-0.6
3,671,381	-		GFF3623	0.36	-1.1
3,671,381	-		GFF3623	0.36	-0.4
3,671,381	-		GFF3623	0.36	-2.4
3,671,381	-		GFF3623	0.36	-1.7
3,671,383	-		GFF3623	0.36	-0.4
3,671,383	-		GFF3623	0.36	-1.0
3,671,383	-		GFF3623	0.36	+0.6
3,671,435	+		GFF3623	0.39	-1.7
3,671,435	+		GFF3623	0.39	-0.9
3,671,443	-		GFF3623	0.39	-0.0
3,671,478	+		GFF3623	0.41	-0.0
3,671,486	-		GFF3623	0.41	-1.7
3,671,486	-		GFF3623	0.41	-0.1
3,671,491	-		GFF3623	0.41	-1.9
3,671,492	+		GFF3623	0.41	-2.4
3,671,498	+		GFF3623	0.42	-1.8
3,671,522	+		GFF3623	0.43	-2.3
3,671,522	-		GFF3623	0.43	+0.4
3,671,531	+		GFF3623	0.43	+0.9
3,671,536	+		GFF3623	0.43	-1.1
3,671,538	+		GFF3623	0.44	+1.3
3,671,538	+		GFF3623	0.44	+0.3
3,671,546	-		GFF3623	0.44	-0.9
3,671,606	-		GFF3623	0.47	-0.1
3,671,629	+		GFF3623	0.48	-0.0
3,671,629	-		GFF3623	0.48	-1.2
3,671,676	+		GFF3623	0.50	+0.9
3,671,676	+		GFF3623	0.50	-1.0
3,671,682	-		GFF3623	0.50	-1.0
3,671,700	-		GFF3623	0.51	-1.5
3,671,714	+		GFF3623	0.52	+0.5
3,671,721	-		GFF3623	0.52	-1.8
3,671,721	-		GFF3623	0.52	+0.5
3,671,748	+		GFF3623	0.53	+1.6
3,671,771	+		GFF3623	0.54	-0.3
3,671,777	+		GFF3623	0.55	+0.1
3,671,784	-		GFF3623	0.55	-0.3
3,671,789	+		GFF3623	0.55	+1.5
3,671,789	+		GFF3623	0.55	+1.2
3,671,797	-		GFF3623	0.56	-0.2
3,671,821	-		GFF3623	0.57	-0.2
3,671,840	-		GFF3623	0.58	+0.7
3,671,843	+		GFF3623	0.58	-0.1
3,671,843	+		GFF3623	0.58	+0.7
3,671,858	+		GFF3623	0.58	-1.1
3,671,906	-		GFF3623	0.61	-0.1
3,671,917	+		GFF3623	0.61	+0.2
3,671,925	-		GFF3623	0.62	+1.2
3,671,925	-		GFF3623	0.62	-0.1
3,671,925	-		GFF3623	0.62	+0.1
3,671,925	-		GFF3623	0.62	-0.1
3,671,925	-		GFF3623	0.62	+0.5
3,671,947	+		GFF3623	0.63	-2.2
3,672,016	+		GFF3623	0.66	-1.4
3,672,024	-		GFF3623	0.66	-0.5
3,672,026	+		GFF3623	0.66	+1.7
3,672,043	-		GFF3623	0.67	-0.7
3,672,043	-		GFF3623	0.67	-0.2
3,672,043	-		GFF3623	0.67	+0.2
3,672,043	-		GFF3623	0.67	-1.4
3,672,071	+		GFF3623	0.68	-1.3
3,672,071	+		GFF3623	0.68	-1.1
3,672,071	+		GFF3623	0.68	+1.2
3,672,071	+		GFF3623	0.68	-1.0
3,672,071	+		GFF3623	0.68	-0.1
3,672,079	-		GFF3623	0.69	-0.1
3,672,079	-		GFF3623	0.69	-0.0
3,672,079	-		GFF3623	0.69	+0.7
3,672,080	+		GFF3623	0.69	+0.9
3,672,080	+		GFF3623	0.69	+1.0
3,672,084	-		GFF3623	0.69	+0.1
3,672,084	-		GFF3623	0.69	-0.0
3,672,088	-		GFF3623	0.69	+1.7
3,672,088	-		GFF3623	0.69	+0.5
3,672,093	-		GFF3623	0.69	-2.6
3,672,093	-		GFF3623	0.69	-1.3
3,672,093	-		GFF3623	0.69	-0.0
3,672,093	-		GFF3623	0.69	-1.1
3,672,109	+		GFF3623	0.70	+0.1
3,672,109	+		GFF3623	0.70	-1.3
3,672,116	+		GFF3623	0.70	-0.3
3,672,116	+		GFF3623	0.70	-0.1
3,672,117	-		GFF3623	0.71	+0.1
3,672,117	-		GFF3623	0.71	-1.7
3,672,117	-		GFF3623	0.71	+1.4
3,672,124	-		GFF3623	0.71	-0.7
3,672,138	-		GFF3623	0.72	-0.9
3,672,150	-		GFF3623	0.72	-0.1
3,672,159	+		GFF3623	0.73	+1.5
3,672,177	+		GFF3623	0.73	-2.1
3,672,177	+		GFF3623	0.73	+0.6
3,672,187	+		GFF3623	0.74	+0.4
3,672,189	+		GFF3623	0.74	-0.2
3,672,197	-		GFF3623	0.74	+0.3
3,672,199	+		GFF3623	0.74	+1.2
3,672,199	+		GFF3623	0.74	-0.0
3,672,209	+		GFF3623	0.75	+0.2
3,672,223	+		GFF3623	0.75	-1.0
3,672,223	+		GFF3623	0.75	+0.1
3,672,226	-		GFF3623	0.76	+0.6
3,672,226	-		GFF3623	0.76	-1.0
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