Strain Fitness in Sphingobium sp. HT1-2 around GFF3528

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,572,703	-		GFF3527	0.56	-0.3
3,572,703	-		GFF3527	0.56	+0.5
3,572,707	+		GFF3527	0.56	+0.5
3,572,730	-		GFF3527	0.58	+0.3
3,572,730	-		GFF3527	0.58	-0.2
3,572,736	+		GFF3527	0.58	-1.7
3,572,744	+		GFF3527	0.58	-1.3
3,572,744	+		GFF3527	0.58	-1.2
3,572,744	+		GFF3527	0.58	-1.1
3,572,744	-		GFF3527	0.58	+0.8
3,572,749	+		GFF3527	0.59	-0.5
3,572,752	-		GFF3527	0.59	+0.4
3,572,752	-		GFF3527	0.59	-0.5
3,572,757	-		GFF3527	0.59	-0.8
3,572,762	-		GFF3527	0.59	+0.1
3,572,768	-		GFF3527	0.60	+1.1
3,572,775	-		GFF3527	0.60	+1.9
3,572,775	-		GFF3527	0.60	+0.2
3,572,775	-		GFF3527	0.60	-0.1
3,572,797	+		GFF3527	0.62	+0.3
3,572,806	-		GFF3527	0.62	+1.1
3,572,818	+		GFF3527	0.63	-0.1
3,572,826	-		GFF3527	0.63	-1.1
3,572,845	+		GFF3527	0.64	-2.1
3,572,852	+		GFF3527	0.65	-1.8
3,572,852	+		GFF3527	0.65	-1.1
3,572,852	+		GFF3527	0.65	+0.2
3,572,865	-		GFF3527	0.66	-1.6
3,572,877	+		GFF3527	0.66	-0.4
3,572,880	-		GFF3527	0.66	+0.8
3,572,885	-		GFF3527	0.67	-0.1
3,572,895	-		GFF3527	0.67	+0.4
3,572,910	-		GFF3527	0.68	+0.5
3,572,910	-		GFF3527	0.68	+1.7
3,572,934	+		GFF3527	0.70	-1.9
3,572,942	-		GFF3527	0.70	+1.1
3,572,942	-		GFF3527	0.70	-0.4
3,572,946	+		GFF3527	0.70	+0.5
3,572,948	+		GFF3527	0.71	-0.0
3,572,952	-		GFF3527	0.71	+0.2
3,572,956	-		GFF3527	0.71	-0.9
3,572,961	+		GFF3527	0.71	-2.0
3,572,973	+		GFF3527	0.72	-0.8
3,572,976	-		GFF3527	0.72	-1.7
3,572,976	-		GFF3527	0.72	-0.0
3,572,993	+		GFF3527	0.73	-1.8
3,572,993	+		GFF3527	0.73	+0.8
3,572,993	+		GFF3527	0.73	-1.8
3,572,995	+		GFF3527	0.73	+0.1
3,573,003	+		GFF3527	0.74	-0.7
3,573,003	+		GFF3527	0.74	-2.5
3,573,011	-		GFF3527	0.74	-2.3
3,573,036	-		GFF3527	0.76	+0.5
3,573,051	+		GFF3527	0.77	-0.5
3,573,051	+		GFF3527	0.77	-0.5
3,573,051	+		GFF3527	0.77	-1.2
3,573,051	+		GFF3527	0.77	+0.2
3,573,051	+		GFF3527	0.77	+0.1
3,573,051	+		GFF3527	0.77	-1.8
3,573,051	+		GFF3527	0.77	-2.5
3,573,054	-		GFF3527	0.77	+0.7
3,573,056	+		GFF3527	0.77	-0.5
3,573,058	+		GFF3527	0.77	-0.8
3,573,059	-		GFF3527	0.77	-1.3
3,573,059	-		GFF3527	0.77	-0.4
3,573,059	-		GFF3527	0.77	-0.6
3,573,059	-		GFF3527	0.77	+0.2
3,573,059	-		GFF3527	0.77	-1.8
3,573,059	-		GFF3527	0.77	+1.5
3,573,059	-		GFF3527	0.77	+0.4
3,573,066	+		GFF3527	0.78	+0.9
3,573,121	-		GFF3527	0.81	+1.2
3,573,121	-		GFF3527	0.81	-0.9
3,573,131	+		GFF3527	0.81	-2.6
3,573,141	+		GFF3527	0.82	-2.6
3,573,141	+		GFF3527	0.82	-0.7
3,573,141	+		GFF3527	0.82	-1.8
3,573,143	+		GFF3527	0.82	+0.5
3,573,149	+		GFF3527	0.82	+0.5
3,573,149	-		GFF3527	0.82	-2.1
3,573,151	-		GFF3527	0.83	-0.4
3,573,156	-		GFF3527	0.83	-1.1
3,573,161	+		GFF3527	0.83	-0.7
3,573,171	+		GFF3527	0.84	-1.0
3,573,198	-		GFF3527	0.85	-0.4
3,573,200	+		GFF3527	0.85	-0.7
3,573,228	+		GFF3527	0.87	+0.0
3,573,232	-		GFF3527	0.87	-2.7
3,573,267	+		GFF3527	0.89	-0.8
3,573,296	-				-2.1
3,573,302	-				+0.8
3,573,305	+				-0.5
3,573,306	+				-1.6
3,573,306	+				+0.5
3,573,308	-				-0.6
3,573,308	-				-0.3
3,573,314	-				-1.3
3,573,349	+				-0.4
3,573,355	-				+0.2
3,573,382	+				+1.3
3,573,405	-				-0.6
3,573,454	+				-0.3
3,573,486	+				-0.1
3,573,510	+				-0.3
3,573,522	+				+1.2
3,573,561	-				-1.0
3,573,561	-				+0.8
3,573,624	-				-0.2
3,573,704	-				+2.0
3,573,704	-				+1.1
3,573,766	-		GFF3528	0.18	+0.4
3,573,784	-		GFF3528	0.23	-0.5
3,573,795	-		GFF3528	0.25	-0.8
3,573,834	+		GFF3528	0.36	-1.8
3,573,845	+		GFF3528	0.39	-1.6
3,573,845	+		GFF3528	0.39	-0.4
3,573,850	+		GFF3528	0.40	-0.8
3,573,853	-		GFF3528	0.41	-1.2
3,573,853	-		GFF3528	0.41	-0.5
3,573,854	+		GFF3528	0.41	-0.3
3,573,861	+		GFF3528	0.43	-1.3
3,573,870	+		GFF3528	0.45	-0.6
3,573,879	-		GFF3528	0.48	-0.1
3,573,892	+		GFF3528	0.51	-1.5
3,573,901	+		GFF3528	0.53	-1.0
3,573,901	+		GFF3528	0.53	-0.3
3,573,904	-		GFF3528	0.54	-0.6
3,573,909	-		GFF3528	0.55	-1.6
3,573,909	-		GFF3528	0.55	-0.1
3,573,909	-		GFF3528	0.55	-1.8
3,573,909	-		GFF3528	0.55	+0.3
3,573,909	-		GFF3528	0.55	-0.1
3,573,916	+		GFF3528	0.57	-0.1
3,573,930	-		GFF3528	0.61	+1.5
3,573,968	+		GFF3528	0.71	-1.8
3,573,976	-		GFF3528	0.73	+0.7
3,573,990	+		GFF3528	0.77	-0.6
3,573,990	+		GFF3528	0.77	-1.8
3,573,990	+		GFF3528	0.77	-2.4
3,573,993	-		GFF3528	0.77	-0.4
3,574,025	+		GFF3528	0.86	+1.2
3,574,025	+		GFF3528	0.86	-0.7
3,574,033	-		GFF3528	0.88	+0.3
3,574,035	+		GFF3528	0.88	-2.1
3,574,035	+		GFF3528	0.88	+0.1
3,574,043	-				+0.5
3,574,043	-				+0.5
3,574,043	-				-1.4
3,574,043	-				-1.8
3,574,043	-				-0.6
3,574,068	+				-0.9
3,574,068	+				+1.1
3,574,076	-				-0.1
3,574,076	-				-0.4
3,574,158	-				+1.3
3,574,281	+				+1.0
3,574,281	+				+0.6
3,574,740	-				+0.4
3,574,759	-				-1.9
3,574,773	+				+1.4
3,574,773	+				-1.3
3,574,773	+				-0.4
3,574,773	+				+0.2
3,574,773	+				+0.7
3,574,773	+				+0.3
3,574,773	+				+0.7
3,574,776	-				+0.1
3,574,781	-				-1.3
3,574,786	-				-0.0
3,574,799	+				-0.7
3,574,799	+				-1.9
3,574,828	+				+0.7
3,574,836	-		GFF3529	0.10	+0.9
3,574,876	+		GFF3529	0.16	-1.3
3,574,876	+		GFF3529	0.16	-1.4
3,574,876	+		GFF3529	0.16	-1.2
3,574,884	-		GFF3529	0.17	+0.4
3,574,884	-		GFF3529	0.17	-1.7
3,574,940	-		GFF3529	0.24	+0.5
3,574,967	+		GFF3529	0.28	+0.3
3,574,975	-		GFF3529	0.29	+0.3
3,575,003	+		GFF3529	0.32	-0.2
3,575,003	+		GFF3529	0.32	-0.8
3,575,003	+		GFF3529	0.32	-2.3
3,575,003	+		GFF3529	0.32	+0.4
3,575,003	+		GFF3529	0.32	+1.2
3,575,003	+		GFF3529	0.32	-1.3
3,575,011	-		GFF3529	0.33	-0.6
3,575,011	-		GFF3529	0.33	-0.1
3,575,011	-		GFF3529	0.33	+0.9
3,575,018	-		GFF3529	0.34	-1.5
3,575,025	+		GFF3529	0.35	+0.4
3,575,028	-		GFF3529	0.36	+1.2
3,575,033	-		GFF3529	0.36	-1.6
3,575,072	+		GFF3529	0.41	-0.4
3,575,072	+		GFF3529	0.41	+0.5