Strain Fitness in Sphingobium sp. HT1-2 around GFF3520

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,558,359	+		GFF3519	0.57	-1.8
3,558,367	-		GFF3519	0.58	-0.2
3,558,367	-		GFF3519	0.58	-1.0
3,558,369	+		GFF3519	0.58	-0.1
3,558,369	+		GFF3519	0.58	+0.2
3,558,395	+		GFF3519	0.59	-0.6
3,558,395	+		GFF3519	0.59	-0.7
3,558,395	+		GFF3519	0.59	-0.7
3,558,395	+		GFF3519	0.59	-0.5
3,558,395	+		GFF3519	0.59	-1.2
3,558,395	+		GFF3519	0.59	-2.0
3,558,395	+		GFF3519	0.59	-2.6
3,558,395	+		GFF3519	0.59	-2.5
3,558,400	+		GFF3519	0.59	-1.9
3,558,400	+		GFF3519	0.59	-1.0
3,558,400	+		GFF3519	0.59	+1.4
3,558,400	+		GFF3519	0.59	-1.1
3,558,400	+		GFF3519	0.59	+1.3
3,558,408	-		GFF3519	0.60	-0.3
3,558,408	-		GFF3519	0.60	-0.2
3,558,408	-		GFF3519	0.60	-0.0
3,558,408	-		GFF3519	0.60	-0.5
3,558,408	-		GFF3519	0.60	-1.1
3,558,442	+		GFF3519	0.61	-1.6
3,558,442	+		GFF3519	0.61	+0.3
3,558,450	-		GFF3519	0.61	+0.2
3,558,470	+		GFF3519	0.62	+0.3
3,558,473	-		GFF3519	0.62	+0.2
3,558,473	-		GFF3519	0.62	-0.5
3,558,473	-		GFF3519	0.62	-0.6
3,558,473	-		GFF3519	0.62	+0.4
3,558,475	-		GFF3519	0.63	+0.7
3,558,496	-		GFF3519	0.64	-0.7
3,558,498	+		GFF3519	0.64	-0.0
3,558,498	+		GFF3519	0.64	-0.2
3,558,498	+		GFF3519	0.64	-1.3
3,558,503	-		GFF3519	0.64	+0.3
3,558,511	-		GFF3519	0.64	+0.1
3,558,523	+		GFF3519	0.65	-1.6
3,558,523	+		GFF3519	0.65	-0.7
3,558,523	+		GFF3519	0.65	+0.5
3,558,526	-		GFF3519	0.65	-1.6
3,558,531	-		GFF3519	0.65	+0.7
3,558,531	-		GFF3519	0.65	-1.2
3,558,531	-		GFF3519	0.65	+0.5
3,558,531	-		GFF3519	0.65	-0.3
3,558,531	-		GFF3519	0.65	+0.0
3,558,562	-		GFF3519	0.66	+1.1
3,558,568	+		GFF3519	0.67	-0.5
3,558,568	+		GFF3519	0.67	-0.8
3,558,585	+		GFF3519	0.67	+0.2
3,558,585	+		GFF3519	0.67	-0.5
3,558,585	+		GFF3519	0.67	+0.5
3,558,585	+		GFF3519	0.67	-0.3
3,558,585	+		GFF3519	0.67	+0.2
3,558,585	+		GFF3519	0.67	-0.3
3,558,590	+		GFF3519	0.68	-0.1
3,558,593	-		GFF3519	0.68	+1.6
3,558,593	-		GFF3519	0.68	-0.7
3,558,593	-		GFF3519	0.68	-0.9
3,558,593	-		GFF3519	0.68	+0.3
3,558,593	-		GFF3519	0.68	-0.1
3,558,593	-		GFF3519	0.68	+0.1
3,558,593	-		GFF3519	0.68	-0.3
3,558,593	-		GFF3519	0.68	+0.6
3,558,608	+		GFF3519	0.68	-0.4
3,558,608	+		GFF3519	0.68	+0.2
3,558,652	+		GFF3519	0.70	+0.9
3,558,652	+		GFF3519	0.70	+0.0
3,558,660	-		GFF3519	0.71	-0.4
3,558,660	-		GFF3519	0.71	-1.0
3,558,660	-		GFF3519	0.71	+0.3
3,558,690	+		GFF3519	0.72	-1.6
3,558,695	+		GFF3519	0.72	-2.1
3,558,698	+		GFF3519	0.72	-0.3
3,558,764	+		GFF3519	0.75	-1.0
3,558,780	+		GFF3519	0.76	-0.6
3,558,788	-		GFF3519	0.77	-0.1
3,558,799	+		GFF3519	0.77	+0.6
3,558,809	-		GFF3519	0.77	+0.1
3,558,828	-		GFF3519	0.78	-0.6
3,558,828	-		GFF3519	0.78	-1.2
3,558,838	+		GFF3519	0.79	-0.4
3,558,853	-		GFF3519	0.79	-3.1
3,558,877	-		GFF3519	0.80	+0.1
3,558,880	-		GFF3519	0.81	-1.0
3,558,882	+		GFF3519	0.81	-1.7
3,558,895	+		GFF3519	0.81	+0.3
3,558,946	-		GFF3519	0.84	+0.1
3,558,946	-		GFF3519	0.84	-2.7
3,558,987	+		GFF3519	0.85	-1.6
3,558,987	+		GFF3519	0.85	-1.0
3,559,000	-		GFF3519	0.86	-2.1
3,559,040	-		GFF3519	0.88	+0.4
3,559,058	-		GFF3519	0.89	+0.2
3,559,060	+		GFF3519	0.89	+0.7
3,559,060	+		GFF3519	0.89	+0.2
3,559,062	+		GFF3519	0.89	-1.4
3,559,075	+		GFF3519	0.89	-1.4
3,559,129	+				+0.6
3,559,131	+				-0.6
3,559,131	+				-0.7
3,559,131	+				-0.7
3,559,138	+				-0.2
3,559,139	-				-0.4
3,559,147	+				-0.2
3,559,147	+				+0.1
3,559,155	-				-1.6
3,559,155	-				-2.6
3,559,206	-				+0.7
3,559,221	-				-2.0
3,559,228	+				+0.5
3,559,236	-				-1.9
3,559,236	-				-0.3
3,559,236	-				-1.7
3,559,243	+				+1.1
3,559,246	-				-2.0
3,559,246	-				-0.8
3,559,246	-				-1.1
3,559,250	+				-1.1
3,559,250	+				+0.1
3,559,250	+				-0.8
3,559,250	+				+1.5
3,559,251	-				-0.4
3,559,251	-				-0.4
3,559,256	+				-0.2
3,559,256	+				-0.6
3,559,256	+				-0.0
3,559,256	+				-0.1
3,559,258	-				-0.9
3,559,258	-				-0.6
3,559,258	-				-2.2
3,559,261	+				-1.6
3,559,264	-				-0.1
3,559,266	+				-0.1
3,559,266	+				-1.3
3,559,266	+				+0.4
3,559,266	+				+0.1
3,559,266	+				+1.0
3,559,266	+				-0.6
3,559,266	+				+1.1
3,559,266	+				+0.4
3,559,266	+				-0.7
3,559,266	+				+1.3
3,559,266	+				-0.9
3,559,266	+				-0.7
3,559,266	+				+0.3
3,559,266	+				-1.1
3,559,266	+				-0.8
3,559,266	+				+0.2
3,559,266	+				-0.5
3,559,266	+				-0.5
3,559,266	+				-0.4
3,559,266	+				-0.3
3,559,266	+				-0.3
3,559,266	+				-1.0
3,559,266	+				+0.0
3,559,266	+				-1.1
3,559,266	+				+0.1
3,559,274	-				+0.5
3,559,274	-				+1.2
3,559,274	-				-1.0
3,559,274	-				-1.0
3,559,274	-				+0.9
3,559,274	-				+0.4
3,559,274	-				-0.1
3,559,274	-				+0.7
3,559,274	-				-0.4
3,559,274	-				-1.1
3,559,274	-				-0.7
3,559,274	-				-1.4
3,559,274	-				+0.4
3,559,274	-				-0.3
3,559,274	-				-0.3
3,559,274	-				-0.2
3,559,274	-				-0.7
3,559,274	-				+0.5
3,559,274	-				+0.5
3,559,274	-				+0.2
3,559,274	-				-2.1
3,559,274	-				-1.3
3,559,274	-				-0.6
3,559,274	-				-1.1
3,559,274	-				-1.1
3,559,274	-				-0.5
3,559,274	-				+1.5
3,559,274	-				+0.5
3,559,274	-				-0.7
3,559,274	-				+0.7
3,559,274	-				-1.9
3,559,274	-				+0.3
3,559,284	-				-0.7
3,559,300	+				+0.1
3,559,302	-				-1.2
3,559,305	+				-0.5
3,559,313	-				+0.0
3,559,336	+				+0.1
3,559,352	-				+0.3
3,559,353	-				+0.6
3,559,357	+				+0.3
3,559,359	+				-0.1
3,559,367	+				-0.5
3,559,375	-				-0.4
3,559,375	-				+1.1
3,559,377	+				-0.8
3,559,377	+				+1.7
3,559,380	-				-0.9
3,559,380	-				+0.0
3,559,380	-				+0.4
3,559,380	-				-2.3
3,559,380	-				-0.9
3,559,385	-				-0.2
3,559,385	-				-0.4
3,559,385	-				+0.1
3,559,402	-		GFF3520	0.10	-0.1
3,559,417	+		GFF3520	0.12	+0.5
3,559,442	+		GFF3520	0.15	-0.9
3,559,450	-		GFF3520	0.16	-0.9
3,559,450	-		GFF3520	0.16	+0.7
3,559,452	+		GFF3520	0.16	-0.3
3,559,460	-		GFF3520	0.17	-0.0
3,559,500	+		GFF3520	0.22	-1.5
3,559,500	+		GFF3520	0.22	+1.1
3,559,500	+		GFF3520	0.22	-0.2
3,559,507	-		GFF3520	0.23	-0.0
3,559,508	+		GFF3520	0.23	+0.3
3,559,508	-		GFF3520	0.23	+0.2
3,559,508	-		GFF3520	0.23	-0.4
3,559,512	+		GFF3520	0.23	-1.3
3,559,533	+		GFF3520	0.26	-1.0
3,559,559	+		GFF3520	0.29	-1.3
3,559,573	-		GFF3520	0.30	-0.9
3,559,583	-		GFF3520	0.31	-0.4
3,559,590	+		GFF3520	0.32	+1.9
3,559,602	+		GFF3520	0.34	+0.0
3,559,619	+		GFF3520	0.36	-1.5
3,559,674	-		GFF3520	0.42	+0.9
3,559,706	+		GFF3520	0.46	-0.8
3,559,709	-		GFF3520	0.46	-0.5
3,559,714	-		GFF3520	0.47	-2.4
3,559,714	-		GFF3520	0.47	+0.5
3,559,714	-		GFF3520	0.47	-0.6
3,559,727	-		GFF3520	0.48	+0.2
3,559,757	-		GFF3520	0.52	-1.0
3,559,765	+		GFF3520	0.53	-0.2
3,559,766	-		GFF3520	0.53	-0.7
3,559,771	-		GFF3520	0.53	-0.3
3,559,776	+		GFF3520	0.54	+0.3
3,559,800	+		GFF3520	0.57	+0.6
3,559,800	+		GFF3520	0.57	-0.3
3,559,800	+		GFF3520	0.57	+0.4
3,559,800	+		GFF3520	0.57	-0.9
3,559,805	-		GFF3520	0.57	+0.7
3,559,810	+		GFF3520	0.58	+1.4
3,559,810	+		GFF3520	0.58	+0.3
3,559,810	+		GFF3520	0.58	-0.9
3,559,810	+		GFF3520	0.58	+0.2
3,559,810	+		GFF3520	0.58	-1.0
3,559,816	-		GFF3520	0.59	-0.0
3,559,818	-		GFF3520	0.59	+0.9
3,559,818	-		GFF3520	0.59	+0.8
3,559,818	-		GFF3520	0.59	-1.9
3,559,818	-		GFF3520	0.59	-0.9
3,559,820	+		GFF3520	0.59	-1.1
3,559,821	+		GFF3520	0.59	+0.5
3,559,846	+		GFF3520	0.62	-0.4
3,559,846	+		GFF3520	0.62	-0.4
3,559,846	+		GFF3520	0.62	-1.8
3,559,846	+		GFF3520	0.62	-0.6
3,559,846	+		GFF3520	0.62	-0.3
3,559,849	-		GFF3520	0.62	+0.4
3,559,854	-		GFF3520	0.63	-1.9
3,559,854	-		GFF3520	0.63	-0.3
3,559,862	+		GFF3520	0.64	+0.4
3,559,862	+		GFF3520	0.64	+0.4
3,559,877	+		GFF3520	0.66	+0.0
3,559,877	+		GFF3520	0.66	-0.1
3,559,877	+		GFF3520	0.66	+0.5
3,559,877	+		GFF3520	0.66	-0.6
3,559,882	-		GFF3520	0.66	-2.1
3,559,885	-		GFF3520	0.67	+0.2
3,559,885	-		GFF3520	0.67	-0.0
3,559,885	-		GFF3520	0.67	-0.5
3,559,909	+		GFF3520	0.69	-0.6
3,559,926	+		GFF3520	0.71	+0.1
3,559,934	-		GFF3520	0.72	-1.4
3,559,979	-		GFF3520	0.77	-1.6
3,559,979	-		GFF3520	0.77	-0.6
3,559,998	+		GFF3520	0.80	-1.1
3,559,998	-		GFF3520	0.80	-1.1
3,560,004	+		GFF3520	0.80	-1.2
3,560,024	-		GFF3520	0.83	-0.5
3,560,024	-		GFF3520	0.83	+0.7
3,560,024	-		GFF3520	0.83	-0.7
3,560,044	+		GFF3520	0.85	-1.7
3,560,045	+		GFF3520	0.85	+0.3
3,560,046	+		GFF3520	0.85	+0.1
3,560,046	-		GFF3520	0.85	+0.3
3,560,052	-		GFF3520	0.86	-0.9
3,560,053	-		GFF3520	0.86	-1.0
3,560,053	-		GFF3520	0.86	+1.2
3,560,053	-		GFF3520	0.86	-1.1
3,560,053	-		GFF3520	0.86	-1.1
3,560,072	-		GFF3520	0.88	+0.4
3,560,079	-		GFF3520	0.89	+0.3
3,560,079	-		GFF3520	0.89	-0.2
3,560,079	-		GFF3520	0.89	-0.8
3,560,081	+		GFF3520	0.89	+0.3
3,560,089	-				+0.2
3,560,091	-				-0.6
3,560,098	+				+0.7
3,560,103	+				-0.7
3,560,103	+				+0.7
3,560,103	+				-0.7
3,560,103	+				+0.1
3,560,103	+				-1.2
3,560,103	+				+0.6
3,560,108	+				+0.6
3,560,111	-				-1.8
3,560,111	-				-0.6
3,560,111	-				+0.1
3,560,111	-				-0.9
3,560,111	-				-2.7
3,560,111	-				+0.3
3,560,121	+				+0.4
3,560,121	+				-0.3
3,560,129	-				-0.5
3,560,129	-				-0.8
3,560,133	+				-1.5
3,560,140	+				-0.2
3,560,141	+				-0.5
3,560,148	-				-0.9
3,560,148	-				-1.4
3,560,163	+				+1.0
3,560,163	+				+0.4
3,560,168	+				-0.5
3,560,178	+				-0.2
3,560,234	+				-1.5
3,560,234	+				-0.2
3,560,234	+				+0.7
3,560,241	-				-0.0
3,560,241	-				-0.2
3,560,241	-				-0.5
3,560,242	-				-0.6
3,560,306	+				-1.3
3,560,314	-				-0.4
3,560,333	-				+0.5
3,560,353	+				+0.1
3,560,354	+				+1.7
3,560,355	+				-0.7
3,560,360	+				+0.4
3,560,370	+				+0.9
3,560,372	-				-1.4
3,560,372	-				-2.5
3,560,372	-				+0.7
3,560,410	+				+0.4
3,560,413	-				+0.2
3,560,424	+		GFF3521	0.10	-1.7
3,560,434	+		GFF3521	0.12	+0.6
3,560,456	+		GFF3521	0.15	-0.1
3,560,457	+		GFF3521	0.15	+1.0
3,560,457	+		GFF3521	0.15	-0.2
3,560,457	+		GFF3521	0.15	+0.1
3,560,464	-		GFF3521	0.16	+0.7
3,560,464	-		GFF3521	0.16	-0.6
3,560,465	-		GFF3521	0.16	+0.9
3,560,466	+		GFF3521	0.17	-0.0
3,560,466	+		GFF3521	0.17	+0.5
3,560,474	-		GFF3521	0.18	+0.7
3,560,474	-		GFF3521	0.18	+0.3
3,560,474	-		GFF3521	0.18	-0.5
3,560,474	-		GFF3521	0.18	+0.1
3,560,490	+		GFF3521	0.20	+0.2
3,560,490	+		GFF3521	0.20	+0.1
3,560,490	+		GFF3521	0.20	-0.8
3,560,490	+		GFF3521	0.20	-0.4
3,560,490	+		GFF3521	0.20	-1.1
3,560,490	+		GFF3521	0.20	-0.9
3,560,490	+		GFF3521	0.20	-1.1
3,560,490	+		GFF3521	0.20	-2.1
3,560,490	+		GFF3521	0.20	+0.2
3,560,498	-		GFF3521	0.21	-0.1
3,560,498	-		GFF3521	0.21	+0.5
3,560,502	+		GFF3521	0.22	-0.1
3,560,521	+		GFF3521	0.25	-0.7
3,560,521	+		GFF3521	0.25	-0.2
3,560,525	+		GFF3521	0.25	-0.1
3,560,529	-		GFF3521	0.26	-1.3
3,560,533	-		GFF3521	0.27	+0.4
3,560,534	-		GFF3521	0.27	+0.7
3,560,534	-		GFF3521	0.27	+0.7
3,560,539	+		GFF3521	0.28	+0.6
3,560,564	+		GFF3521	0.31	-0.0
3,560,565	-		GFF3521	0.32	+0.1
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