Strain Fitness in Sphingobium sp. HT1-2 around GFF351

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF350 and GFF351 are separated by 1 nucleotidesGFF351 and GFF352 are separated by 9 nucleotidesGFF352 and GFF353 are separated by 2 nucleotides GFF350 - Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB, at 342,840 to 344,135 GFF350 GFF351 - 'Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)' transl_table=11, at 344,137 to 344,577 GFF351 GFF352 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 344,587 to 345,222 GFF352 GFF353 - Acid phosphatase (EC 3.1.3.2), at 345,225 to 346,109 GFF353 Position (kb) 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 343.161 kb on - strand, within GFF350at 343.227 kb on - strand, within GFF350at 343.276 kb on + strand, within GFF350at 343.297 kb on + strand, within GFF350at 343.305 kb on - strand, within GFF350at 343.338 kb on - strand, within GFF350at 343.392 kb on - strand, within GFF350at 343.427 kb on + strand, within GFF350at 343.427 kb on - strand, within GFF350at 343.435 kb on - strand, within GFF350at 343.472 kb on + strand, within GFF350at 343.480 kb on - strand, within GFF350at 343.504 kb on - strand, within GFF350at 343.558 kb on - strand, within GFF350at 343.558 kb on - strand, within GFF350at 343.590 kb on - strand, within GFF350at 343.605 kb on + strand, within GFF350at 343.627 kb on + strand, within GFF350at 343.683 kb on - strand, within GFF350at 343.685 kb on + strand, within GFF350at 343.688 kb on - strand, within GFF350at 343.695 kb on + strand, within GFF350at 343.708 kb on + strand, within GFF350at 343.735 kb on + strand, within GFF350at 343.735 kb on + strand, within GFF350at 343.743 kb on - strand, within GFF350at 343.743 kb on - strand, within GFF350at 343.817 kb on + strand, within GFF350at 343.817 kb on + strand, within GFF350at 343.825 kb on - strand, within GFF350at 343.875 kb on + strand, within GFF350at 343.883 kb on + strand, within GFF350at 343.902 kb on + strand, within GFF350at 343.976 kb on + strand, within GFF350at 343.977 kb on + strand, within GFF350at 343.984 kb on - strand, within GFF350at 343.984 kb on - strand, within GFF350at 344.005 kb on - strand, within GFF350at 344.039 kb on + strandat 344.039 kb on + strandat 344.039 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.135 kb on + strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.143 kb on - strandat 344.188 kb on - strand, within GFF351at 344.219 kb on + strand, within GFF351at 344.221 kb on - strand, within GFF351at 344.234 kb on + strand, within GFF351at 344.255 kb on - strand, within GFF351at 344.257 kb on - strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.304 kb on - strand, within GFF351at 344.305 kb on + strand, within GFF351at 344.323 kb on + strand, within GFF351at 344.323 kb on + strand, within GFF351at 344.323 kb on - strand, within GFF351at 344.331 kb on - strand, within GFF351at 344.331 kb on - strand, within GFF351at 344.331 kb on - strand, within GFF351at 344.336 kb on - strand, within GFF351at 344.347 kb on + strand, within GFF351at 344.372 kb on + strand, within GFF351at 344.372 kb on + strand, within GFF351at 344.372 kb on + strand, within GFF351at 344.379 kb on - strand, within GFF351at 344.415 kb on + strand, within GFF351at 344.422 kb on - strand, within GFF351at 344.439 kb on + strand, within GFF351at 344.439 kb on + strand, within GFF351at 344.449 kb on - strand, within GFF351at 344.453 kb on - strand, within GFF351at 344.467 kb on + strand, within GFF351at 344.491 kb on - strand, within GFF351at 344.492 kb on + strand, within GFF351at 344.492 kb on + strand, within GFF351at 344.492 kb on + strand, within GFF351at 344.492 kb on + strand, within GFF351at 344.495 kb on + strand, within GFF351at 344.496 kb on + strand, within GFF351at 344.516 kb on + strand, within GFF351at 344.516 kb on + strand, within GFF351at 344.516 kb on + strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.543 kb on - strandat 344.565 kb on + strandat 344.569 kb on - strandat 344.573 kb on - strandat 344.603 kb on - strandat 344.616 kb on - strandat 344.633 kb on + strandat 344.639 kb on + strandat 344.643 kb on + strandat 344.643 kb on + strandat 344.660 kb on - strand, within GFF352at 344.660 kb on - strand, within GFF352at 344.660 kb on - strand, within GFF352at 344.666 kb on - strand, within GFF352at 344.693 kb on + strand, within GFF352at 344.700 kb on + strand, within GFF352at 344.700 kb on + strand, within GFF352at 344.700 kb on + strand, within GFF352at 344.705 kb on + strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.709 kb on + strand, within GFF352at 344.739 kb on + strand, within GFF352at 344.747 kb on + strand, within GFF352at 344.747 kb on + strand, within GFF352at 344.747 kb on + strand, within GFF352at 344.755 kb on - strand, within GFF352at 344.791 kb on + strand, within GFF352at 344.797 kb on - strand, within GFF352at 344.799 kb on - strand, within GFF352at 344.799 kb on - strand, within GFF352at 344.809 kb on - strand, within GFF352at 344.824 kb on + strand, within GFF352at 344.825 kb on + strand, within GFF352at 344.842 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.850 kb on - strand, within GFF352at 344.876 kb on - strand, within GFF352at 344.894 kb on + strand, within GFF352at 344.912 kb on - strand, within GFF352at 344.950 kb on - strand, within GFF352at 344.960 kb on - strand, within GFF352at 344.970 kb on + strand, within GFF352at 344.970 kb on + strand, within GFF352at 344.970 kb on + strand, within GFF352at 344.970 kb on + strand, within GFF352at 344.997 kb on + strand, within GFF352at 345.017 kb on + strand, within GFF352at 345.022 kb on + strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.045 kb on - strand, within GFF352at 345.052 kb on - strand, within GFF352at 345.053 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.177 kb on - strandat 345.199 kb on - strandat 345.207 kb on - strandat 345.211 kb on + strandat 345.211 kb on + strandat 345.211 kb on + strandat 345.212 kb on + strandat 345.212 kb on + strandat 345.219 kb on - strandat 345.219 kb on - strandat 345.220 kb on - strandat 345.248 kb on + strandat 345.291 kb on - strandat 345.311 kb on - strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.321 kb on - strand, within GFF353at 345.321 kb on - strand, within GFF353at 345.321 kb on - strand, within GFF353at 345.321 kb on - strand, within GFF353at 345.321 kb on - strand, within GFF353at 345.326 kb on - strand, within GFF353at 345.327 kb on + strand, within GFF353at 345.331 kb on - strand, within GFF353at 345.331 kb on - strand, within GFF353at 345.345 kb on - strand, within GFF353at 345.348 kb on - strand, within GFF353at 345.348 kb on - strand, within GFF353at 345.348 kb on - strand, within GFF353at 345.363 kb on + strand, within GFF353at 345.386 kb on + strand, within GFF353at 345.388 kb on + strand, within GFF353at 345.393 kb on + strand, within GFF353at 345.393 kb on + strand, within GFF353at 345.401 kb on - strand, within GFF353at 345.401 kb on - strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.408 kb on + strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.455 kb on + strand, within GFF353at 345.455 kb on + strand, within GFF353at 345.463 kb on - strand, within GFF353at 345.473 kb on - strand, within GFF353at 345.475 kb on + strand, within GFF353at 345.483 kb on - strand, within GFF353at 345.520 kb on + strand, within GFF353at 345.530 kb on + strand, within GFF353at 345.530 kb on + strand, within GFF353at 345.530 kb on + strand, within GFF353at 345.537 kb on + strand, within GFF353at 345.542 kb on + strand, within GFF353at 345.547 kb on + strand, within GFF353at 345.552 kb on + strand, within GFF353at 345.555 kb on - strand, within GFF353at 345.555 kb on - strand, within GFF353at 345.560 kb on - strand, within GFF353

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
343,161 - GFF350 0.25 -1.2
343,227 - GFF350 0.30 -1.0
343,276 + GFF350 0.34 -0.1
343,297 + GFF350 0.35 -1.9
343,305 - GFF350 0.36 -0.2
343,338 - GFF350 0.38 -1.4
343,392 - GFF350 0.43 -1.6
343,427 + GFF350 0.45 -0.1
343,427 - GFF350 0.45 -0.1
343,435 - GFF350 0.46 +1.6
343,472 + GFF350 0.49 -0.1
343,480 - GFF350 0.49 +1.0
343,504 - GFF350 0.51 -1.2
343,558 - GFF350 0.55 -1.2
343,558 - GFF350 0.55 +0.4
343,590 - GFF350 0.58 +1.2
343,605 + GFF350 0.59 -0.3
343,627 + GFF350 0.61 +0.3
343,683 - GFF350 0.65 -0.4
343,685 + GFF350 0.65 -0.5
343,688 - GFF350 0.65 -0.7
343,695 + GFF350 0.66 +0.2
343,708 + GFF350 0.67 -1.3
343,735 + GFF350 0.69 +0.2
343,735 + GFF350 0.69 +1.3
343,743 - GFF350 0.70 -1.9
343,743 - GFF350 0.70 -0.5
343,817 + GFF350 0.75 -0.4
343,817 + GFF350 0.75 +0.2
343,825 - GFF350 0.76 -0.9
343,875 + GFF350 0.80 -0.9
343,883 + GFF350 0.80 -0.3
343,902 + GFF350 0.82 -0.7
343,976 + GFF350 0.88 -0.8
343,977 + GFF350 0.88 -1.8
343,984 - GFF350 0.88 +0.3
343,984 - GFF350 0.88 -1.3
344,005 - GFF350 0.90 -0.9
344,039 + -0.3
344,039 + +1.3
344,039 + +0.4
344,135 + -1.4
344,135 + -1.2
344,135 + -0.0
344,135 + -1.0
344,135 + -1.1
344,135 + -0.0
344,135 + +1.0
344,135 + -0.3
344,135 + +0.5
344,135 + +0.9
344,135 + +0.6
344,135 + -1.1
344,135 + -0.4
344,135 + -1.4
344,135 + -1.7
344,135 + -1.4
344,143 - -0.3
344,143 - -1.0
344,143 - -0.9
344,143 - +0.4
344,143 - +0.8
344,143 - -0.3
344,143 - -1.5
344,143 - +0.2
344,143 - -0.5
344,143 - -0.6
344,143 - +0.9
344,143 - +0.4
344,143 - -1.4
344,143 - -2.4
344,143 - -0.4
344,143 - -1.1
344,143 - -1.7
344,143 - +0.5
344,188 - GFF351 0.12 -0.9
344,219 + GFF351 0.19 +1.3
344,221 - GFF351 0.19 -0.5
344,234 + GFF351 0.22 +0.1
344,255 - GFF351 0.27 -0.9
344,257 - GFF351 0.27 +1.4
344,291 + GFF351 0.35 -1.5
344,291 + GFF351 0.35 +0.7
344,291 + GFF351 0.35 -1.1
344,291 + GFF351 0.35 -1.8
344,291 + GFF351 0.35 -0.9
344,291 + GFF351 0.35 -2.3
344,291 + GFF351 0.35 -0.9
344,291 + GFF351 0.35 -0.6
344,291 + GFF351 0.35 -2.0
344,291 + GFF351 0.35 -1.1
344,291 + GFF351 0.35 +1.1
344,291 + GFF351 0.35 -1.1
344,291 + GFF351 0.35 -0.7
344,291 + GFF351 0.35 -0.6
344,291 + GFF351 0.35 -0.1
344,291 + GFF351 0.35 -3.1
344,291 + GFF351 0.35 -0.6
344,291 + GFF351 0.35 +0.4
344,291 + GFF351 0.35 -0.5
344,299 - GFF351 0.37 -0.3
344,299 - GFF351 0.37 -0.5
344,299 - GFF351 0.37 -0.0
344,299 - GFF351 0.37 +0.6
344,299 - GFF351 0.37 +0.3
344,299 - GFF351 0.37 +0.9
344,299 - GFF351 0.37 -0.9
344,299 - GFF351 0.37 +0.4
344,299 - GFF351 0.37 -0.5
344,299 - GFF351 0.37 -0.1
344,299 - GFF351 0.37 +0.2
344,299 - GFF351 0.37 +0.1
344,299 - GFF351 0.37 -0.3
344,299 - GFF351 0.37 +0.4
344,299 - GFF351 0.37 +1.3
344,299 - GFF351 0.37 -1.1
344,299 - GFF351 0.37 -2.2
344,304 - GFF351 0.38 -0.6
344,305 + GFF351 0.38 -0.5
344,323 + GFF351 0.42 -1.9
344,323 + GFF351 0.42 +0.3
344,323 - GFF351 0.42 -0.1
344,331 - GFF351 0.44 +2.4
344,331 - GFF351 0.44 -0.9
344,331 - GFF351 0.44 -1.6
344,336 - GFF351 0.45 -1.1
344,347 + GFF351 0.48 -0.8
344,372 + GFF351 0.53 +0.7
344,372 + GFF351 0.53 -2.2
344,372 + GFF351 0.53 +0.3
344,379 - GFF351 0.55 -2.1
344,415 + GFF351 0.63 -0.9
344,422 - GFF351 0.65 +0.4
344,439 + GFF351 0.68 +0.9
344,439 + GFF351 0.68 -0.2
344,449 - GFF351 0.71 +0.4
344,453 - GFF351 0.72 +0.3
344,467 + GFF351 0.75 +1.7
344,491 - GFF351 0.80 +0.0
344,492 + GFF351 0.80 +1.4
344,492 + GFF351 0.80 -0.0
344,492 + GFF351 0.80 -0.8
344,492 + GFF351 0.80 +0.9
344,495 + GFF351 0.81 -1.1
344,496 + GFF351 0.81 -1.1
344,516 + GFF351 0.86 +0.7
344,516 + GFF351 0.86 -1.3
344,516 + GFF351 0.86 +1.0
344,524 - GFF351 0.88 -0.9
344,524 - GFF351 0.88 -0.9
344,543 - -2.0
344,565 + -1.7
344,569 - +0.2
344,573 - -0.3
344,603 - -0.1
344,616 - +0.2
344,633 + -0.9
344,639 + -0.8
344,643 + +0.1
344,643 + -0.1
344,660 - GFF352 0.11 -0.4
344,660 - GFF352 0.11 -0.6
344,660 - GFF352 0.11 -0.1
344,666 - GFF352 0.12 -2.4
344,693 + GFF352 0.17 -2.1
344,700 + GFF352 0.18 -0.9
344,700 + GFF352 0.18 -2.1
344,700 + GFF352 0.18 +0.4
344,705 + GFF352 0.19 -1.8
344,708 - GFF352 0.19 -0.9
344,708 - GFF352 0.19 +1.1
344,709 + GFF352 0.19 +0.3
344,739 + GFF352 0.24 -0.2
344,747 + GFF352 0.25 +0.5
344,747 + GFF352 0.25 -0.3
344,747 + GFF352 0.25 -0.1
344,755 - GFF352 0.26 -1.1
344,791 + GFF352 0.32 -0.6
344,797 - GFF352 0.33 -1.1
344,799 - GFF352 0.33 +0.6
344,799 - GFF352 0.33 +0.0
344,809 - GFF352 0.35 -1.6
344,824 + GFF352 0.37 +0.6
344,825 + GFF352 0.37 +0.1
344,842 + GFF352 0.40 -0.8
344,849 + GFF352 0.41 +0.9
344,849 + GFF352 0.41 -1.6
344,849 + GFF352 0.41 +0.3
344,850 - GFF352 0.41 +0.6
344,876 - GFF352 0.45 -1.9
344,894 + GFF352 0.48 -1.0
344,912 - GFF352 0.51 -1.4
344,950 - GFF352 0.57 +0.1
344,960 - GFF352 0.59 -1.3
344,970 + GFF352 0.60 +0.2
344,970 + GFF352 0.60 -1.9
344,970 + GFF352 0.60 -0.9
344,970 + GFF352 0.60 +0.1
344,997 + GFF352 0.64 +0.5
345,017 + GFF352 0.68 -0.1
345,022 + GFF352 0.68 +1.3
345,025 - GFF352 0.69 -0.1
345,025 - GFF352 0.69 -0.0
345,025 - GFF352 0.69 -0.8
345,030 - GFF352 0.70 -0.9
345,030 - GFF352 0.70 +0.3
345,030 - GFF352 0.70 -1.4
345,045 - GFF352 0.72 +0.4
345,052 - GFF352 0.73 +0.8
345,053 - GFF352 0.73 +0.1
345,107 - GFF352 0.82 +0.0
345,107 - GFF352 0.82 -2.7
345,107 - GFF352 0.82 +1.0
345,107 - GFF352 0.82 +0.4
345,177 - +0.6
345,199 - -1.5
345,207 - -0.8
345,211 + -0.4
345,211 + +0.1
345,211 + +0.1
345,212 + -2.0
345,212 + -0.8
345,219 - -0.2
345,219 - -1.4
345,220 - +0.1
345,248 + +1.7
345,291 - -0.2
345,311 - +0.1
345,313 + -0.1
345,313 + -1.2
345,313 + -0.2
345,313 + +0.4
345,313 + +1.5
345,313 + -0.5
345,321 - GFF353 0.11 -2.0
345,321 - GFF353 0.11 -0.5
345,321 - GFF353 0.11 -0.9
345,321 - GFF353 0.11 -1.3
345,321 - GFF353 0.11 +0.0
345,326 - GFF353 0.11 +1.4
345,327 + GFF353 0.12 -1.2
345,331 - GFF353 0.12 +0.3
345,331 - GFF353 0.12 -0.8
345,345 - GFF353 0.14 +0.6
345,348 - GFF353 0.14 -2.2
345,348 - GFF353 0.14 +0.8
345,348 - GFF353 0.14 -0.8
345,363 + GFF353 0.16 -0.5
345,386 + GFF353 0.18 +1.0
345,388 + GFF353 0.18 +1.3
345,393 + GFF353 0.19 +0.3
345,393 + GFF353 0.19 -1.4
345,401 - GFF353 0.20 +0.4
345,401 - GFF353 0.20 -1.6
345,403 + GFF353 0.20 -0.1
345,403 + GFF353 0.20 +0.3
345,403 + GFF353 0.20 +0.8
345,403 + GFF353 0.20 +1.4
345,408 + GFF353 0.21 +0.9
345,411 - GFF353 0.21 -0.4
345,411 - GFF353 0.21 +0.6
345,411 - GFF353 0.21 -0.1
345,411 - GFF353 0.21 -0.9
345,411 - GFF353 0.21 -0.3
345,411 - GFF353 0.21 +1.3
345,411 - GFF353 0.21 +0.1
345,411 - GFF353 0.21 +1.0
345,411 - GFF353 0.21 +0.5
345,455 + GFF353 0.26 -1.0
345,455 + GFF353 0.26 -0.2
345,463 - GFF353 0.27 -0.4
345,473 - GFF353 0.28 +0.4
345,475 + GFF353 0.28 +0.1
345,483 - GFF353 0.29 +0.3
345,520 + GFF353 0.33 -0.3
345,530 + GFF353 0.34 -1.7
345,530 + GFF353 0.34 +0.5
345,530 + GFF353 0.34 +0.4
345,537 + GFF353 0.35 -2.3
345,542 + GFF353 0.36 -1.4
345,547 + GFF353 0.36 -0.3
345,552 + GFF353 0.37 -1.5
345,555 - GFF353 0.37 +0.3
345,555 - GFF353 0.37 +0.2
345,560 - GFF353 0.38 +0.3

Or see this region's nucleotide sequence