Strain Fitness in Sphingobium sp. HT1-2 around GFF3460

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,499,095	+				-1.5
3,499,095	+				-0.9
3,499,095	+				-3.1
3,499,095	+				-2.4
3,499,103	-				-1.5
3,499,103	-				-2.4
3,499,103	-				-0.8
3,499,103	-				-2.7
3,499,136	+				-1.0
3,499,144	-				-1.1
3,499,180	-				-0.2
3,499,331	+				+0.2
3,499,392	+		GFF3459	0.10	+0.7
3,499,392	+		GFF3459	0.10	-1.6
3,499,392	+		GFF3459	0.10	+0.5
3,499,400	-		GFF3459	0.11	-0.5
3,499,409	-		GFF3459	0.12	+1.5
3,499,441	-		GFF3459	0.17	-0.0
3,499,458	-		GFF3459	0.19	+0.2
3,499,465	+		GFF3459	0.20	+0.4
3,499,484	+		GFF3459	0.23	-0.0
3,499,502	+		GFF3459	0.25	+0.8
3,499,502	+		GFF3459	0.25	+1.3
3,499,502	+		GFF3459	0.25	+1.5
3,499,508	-		GFF3459	0.26	+0.1
3,499,517	-		GFF3459	0.27	-0.1
3,499,522	-		GFF3459	0.28	+1.7
3,499,566	+		GFF3459	0.34	-1.2
3,499,594	+		GFF3459	0.38	+0.6
3,499,594	+		GFF3459	0.38	+0.4
3,499,594	+		GFF3459	0.38	+0.2
3,499,599	+		GFF3459	0.38	-0.8
3,499,599	+		GFF3459	0.38	-0.2
3,499,599	+		GFF3459	0.38	-0.4
3,499,602	-		GFF3459	0.39	+1.0
3,499,602	-		GFF3459	0.39	-0.8
3,499,602	-		GFF3459	0.39	+0.3
3,499,602	-		GFF3459	0.39	-0.3
3,499,607	-		GFF3459	0.39	-1.9
3,499,620	-		GFF3459	0.41	-0.2
3,499,653	-		GFF3459	0.46	-0.4
3,499,653	-		GFF3459	0.46	-2.2
3,499,658	+		GFF3459	0.46	-0.6
3,499,658	+		GFF3459	0.46	+0.9
3,499,664	-		GFF3459	0.47	+1.0
3,499,666	-		GFF3459	0.47	-0.9
3,499,739	+		GFF3459	0.57	+1.0
3,499,766	+		GFF3459	0.61	+0.5
3,499,822	+		GFF3459	0.69	+0.0
3,499,823	-		GFF3459	0.69	-1.0
3,499,827	+		GFF3459	0.69	-1.7
3,499,831	-		GFF3459	0.70	-1.5
3,499,840	+		GFF3459	0.71	-1.2
3,499,903	+		GFF3459	0.80	-0.3
3,499,918	-		GFF3459	0.82	+0.1
3,499,948	+		GFF3459	0.86	-0.2
3,499,956	-		GFF3459	0.87	-0.7
3,499,965	+		GFF3459	0.88	-0.9
3,499,967	-		GFF3459	0.88	+1.4
3,499,967	-		GFF3459	0.88	-0.6
3,499,970	+		GFF3459	0.89	-0.0
3,499,978	-		GFF3459	0.90	+0.1
3,500,026	-				+0.8
3,500,026	-				+0.3
3,500,028	+				-0.9
3,500,048	+				-0.8
3,500,056	-				-1.0
3,500,056	-				-0.3
3,500,062	-				-0.5
3,500,111	+				-1.1
3,500,111	+				-0.7
3,500,119	-				+0.2
3,500,119	-				+0.6
3,500,119	-				+1.8
3,500,124	-				-1.6
3,500,144	-				-0.3
3,500,144	-				+1.2
3,500,146	-				+0.6
3,500,151	-				-0.6
3,500,159	-				-0.5
3,500,161	-				+0.2
3,500,164	-				+1.1
3,500,213	-		GFF3460	0.12	-1.0
3,500,223	+		GFF3460	0.13	-1.8
3,500,236	+		GFF3460	0.15	-0.4
3,500,249	-		GFF3460	0.16	+0.2
3,500,258	-		GFF3460	0.17	+1.6
3,500,301	+		GFF3460	0.21	-0.6
3,500,335	-		GFF3460	0.25	-0.1
3,500,345	-		GFF3460	0.26	-1.0
3,500,347	+		GFF3460	0.26	-1.6
3,500,355	-		GFF3460	0.27	-0.3
3,500,355	-		GFF3460	0.27	-0.3
3,500,355	-		GFF3460	0.27	-0.0
3,500,355	-		GFF3460	0.27	-0.9
3,500,363	+		GFF3460	0.28	-0.9
3,500,365	-		GFF3460	0.28	-0.4
3,500,420	-		GFF3460	0.34	-0.5
3,500,436	-		GFF3460	0.35	-0.3
3,500,440	+		GFF3460	0.36	-1.6
3,500,458	+		GFF3460	0.37	-1.7
3,500,458	+		GFF3460	0.37	-1.0
3,500,463	+		GFF3460	0.38	-1.9
3,500,471	-		GFF3460	0.39	-1.2
3,500,515	+		GFF3460	0.43	-0.2
3,500,515	+		GFF3460	0.43	+0.3
3,500,523	-		GFF3460	0.44	+0.3
3,500,523	-		GFF3460	0.44	-0.6
3,500,523	-		GFF3460	0.44	-0.7
3,500,523	-		GFF3460	0.44	-0.2
3,500,524	-		GFF3460	0.44	+0.5
3,500,527	-		GFF3460	0.44	+0.2
3,500,527	-		GFF3460	0.44	-0.1
3,500,585	+		GFF3460	0.50	-0.3
3,500,625	+		GFF3460	0.54	-0.4
3,500,649	-		GFF3460	0.57	-0.6
3,500,663	+		GFF3460	0.58	+1.2
3,500,664	+		GFF3460	0.58	-1.1
3,500,665	+		GFF3460	0.59	-0.3
3,500,698	+		GFF3460	0.62	-2.0
3,500,728	+		GFF3460	0.65	-0.2
3,500,728	+		GFF3460	0.65	-1.1
3,500,741	-		GFF3460	0.66	-2.2
3,500,749	-		GFF3460	0.67	-0.6
3,500,863	+		GFF3460	0.79	-1.6
3,500,887	-		GFF3460	0.81	-0.8
3,500,890	+		GFF3460	0.81	-1.1
3,500,894	+		GFF3460	0.82	+0.7
3,500,898	-		GFF3460	0.82	-1.2
3,500,902	-		GFF3460	0.83	+0.0
3,500,913	+		GFF3460	0.84	-1.6
3,500,968	-		GFF3460	0.89	+0.9
3,500,977	+				+0.3
3,501,075	-				+0.9
3,501,076	+				-0.5
3,501,097	+				+0.2
3,501,105	-				-0.5
3,501,105	-				+0.4
3,501,126	-				+0.4
3,501,181	+				-0.2
3,501,184	-				+1.0
3,501,186	+				-0.2
3,501,186	+				+0.1
3,501,189	-				-3.2
3,501,193	-				-2.3
3,501,293	+				-1.4
3,501,293	+				+0.2
3,501,296	-				+0.2
3,501,301	-				-1.8
3,501,301	-				+0.3
3,501,301	-				-1.7
3,501,306	-				+0.9
3,501,347	+				+0.7
3,501,385	-		GFF3461	0.11	+0.6
3,501,395	+		GFF3461	0.12	+0.3
3,501,395	+		GFF3461	0.12	+0.1
3,501,395	+		GFF3461	0.12	-3.0
3,501,403	-		GFF3461	0.13	-0.4
3,501,403	-		GFF3461	0.13	+0.4
3,501,425	+		GFF3461	0.14	-0.2
3,501,425	+		GFF3461	0.14	-1.3
3,501,504	-		GFF3461	0.19	-0.4
3,501,506	+		GFF3461	0.19	+0.8
3,501,521	-		GFF3461	0.20	+0.6
3,501,587	-		GFF3461	0.25	+0.5
3,501,595	+		GFF3461	0.25	-0.8
3,501,603	-		GFF3461	0.26	-0.4
3,501,603	-		GFF3461	0.26	+0.5
3,501,603	-		GFF3461	0.26	-0.7
3,501,613	-		GFF3461	0.26	+0.3
3,501,688	-		GFF3461	0.31	+0.1
3,501,753	-		GFF3461	0.36	+1.0
3,501,753	-		GFF3461	0.36	-1.4
3,501,764	+		GFF3461	0.36	-0.9
3,501,764	+		GFF3461	0.36	+1.5
3,501,764	+		GFF3461	0.36	+0.5
3,501,764	+		GFF3461	0.36	-0.4
3,501,765	-		GFF3461	0.36	-0.3
3,501,772	-		GFF3461	0.37	-0.1
3,501,772	-		GFF3461	0.37	-0.9
3,501,772	-		GFF3461	0.37	-0.8
3,501,772	-		GFF3461	0.37	-0.1
3,501,824	+		GFF3461	0.40	-1.5
3,501,845	-		GFF3461	0.42	-1.0
3,501,851	+		GFF3461	0.42	+0.3
3,501,851	+		GFF3461	0.42	-0.1
3,501,859	-		GFF3461	0.43	-1.4
3,501,859	-		GFF3461	0.43	+1.0
3,501,861	-		GFF3461	0.43	-0.7
3,501,899	+		GFF3461	0.45	+1.2
3,501,902	-		GFF3461	0.45	+1.1
3,501,993	-		GFF3461	0.51	+0.5
3,502,063	+		GFF3461	0.56	-1.5
3,502,071	-		GFF3461	0.57	-0.5
3,502,071	-		GFF3461	0.57	-1.0
3,502,071	-		GFF3461	0.57	-0.5