Strain Fitness in Sphingobium sp. HT1-2 around GFF3451

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,489,631	+				-0.1
3,489,697	-				-1.5
3,489,728	+		GFF3450	0.11	-0.0
3,489,734	-		GFF3450	0.12	+1.4
3,489,736	-		GFF3450	0.12	+0.3
3,489,742	+		GFF3450	0.13	+0.5
3,489,747	+		GFF3450	0.14	-0.4
3,489,747	+		GFF3450	0.14	-1.3
3,489,747	+		GFF3450	0.14	+0.0
3,489,747	+		GFF3450	0.14	-0.4
3,489,747	+		GFF3450	0.14	+0.8
3,489,747	+		GFF3450	0.14	-1.6
3,489,747	+		GFF3450	0.14	-0.4
3,489,747	+		GFF3450	0.14	-2.2
3,489,750	-		GFF3450	0.14	-1.6
3,489,750	-		GFF3450	0.14	-0.8
3,489,750	-		GFF3450	0.14	-0.1
3,489,752	+		GFF3450	0.14	-0.4
3,489,752	+		GFF3450	0.14	-0.2
3,489,752	+		GFF3450	0.14	+0.0
3,489,752	+		GFF3450	0.14	-1.7
3,489,755	-		GFF3450	0.14	+0.1
3,489,755	-		GFF3450	0.14	-0.9
3,489,755	-		GFF3450	0.14	-0.6
3,489,755	-		GFF3450	0.14	-0.4
3,489,755	-		GFF3450	0.14	-1.1
3,489,755	-		GFF3450	0.14	-0.2
3,489,755	-		GFF3450	0.14	+0.3
3,489,755	-		GFF3450	0.14	+1.1
3,489,755	-		GFF3450	0.14	+0.1
3,489,760	-		GFF3450	0.15	-2.6
3,489,760	-		GFF3450	0.15	+0.7
3,489,760	-		GFF3450	0.15	-1.9
3,489,760	-		GFF3450	0.15	-0.5
3,489,776	-		GFF3450	0.17	+0.6
3,489,779	+		GFF3450	0.17	+1.4
3,489,780	+		GFF3450	0.17	+0.7
3,489,788	-		GFF3450	0.18	-1.6
3,489,789	+		GFF3450	0.19	-0.1
3,489,797	-		GFF3450	0.19	-0.9
3,489,797	-		GFF3450	0.19	+0.2
3,489,797	-		GFF3450	0.19	-0.5
3,489,799	-		GFF3450	0.20	-0.4
3,489,824	+		GFF3450	0.23	-0.8
3,489,829	+		GFF3450	0.23	+0.7
3,489,842	-		GFF3450	0.25	-0.0
3,489,842	-		GFF3450	0.25	-0.4
3,489,849	+		GFF3450	0.26	-1.8
3,489,855	+		GFF3450	0.26	-0.2
3,489,856	+		GFF3450	0.26	+0.4
3,489,856	+		GFF3450	0.26	+0.1
3,489,856	+		GFF3450	0.26	+0.4
3,489,856	+		GFF3450	0.26	-0.3
3,489,856	+		GFF3450	0.26	-0.1
3,489,856	+		GFF3450	0.26	-0.5
3,489,856	+		GFF3450	0.26	-1.0
3,489,856	+		GFF3450	0.26	-1.3
3,489,856	+		GFF3450	0.26	-1.9
3,489,864	-		GFF3450	0.27	+0.9
3,489,864	-		GFF3450	0.27	-0.0
3,489,869	-		GFF3450	0.28	+0.6
3,489,869	-		GFF3450	0.28	-0.4
3,489,875	-		GFF3450	0.29	+0.7
3,489,875	-		GFF3450	0.29	-2.5
3,489,900	-		GFF3450	0.32	-1.6
3,489,935	+		GFF3450	0.36	-0.8
3,489,936	-		GFF3450	0.36	+1.4
3,489,939	+		GFF3450	0.36	-1.6
3,489,940	+		GFF3450	0.36	-0.8
3,489,940	+		GFF3450	0.36	-0.0
3,489,943	-		GFF3450	0.37	-1.3
3,489,944	+		GFF3450	0.37	+0.2
3,489,947	-		GFF3450	0.37	-0.2
3,489,948	-		GFF3450	0.37	+0.4
3,489,953	-		GFF3450	0.38	+0.3
3,489,960	+		GFF3450	0.39	-2.9
3,489,961	+		GFF3450	0.39	+0.6
3,489,966	+		GFF3450	0.40	-0.9
3,489,966	+		GFF3450	0.40	+0.7
3,489,966	+		GFF3450	0.40	+0.4
3,489,968	-		GFF3450	0.40	+0.1
3,489,974	-		GFF3450	0.40	-0.6
3,489,974	-		GFF3450	0.40	+0.7
3,489,988	+		GFF3450	0.42	+0.2
3,489,988	+		GFF3450	0.42	+0.1
3,489,993	+		GFF3450	0.43	-1.2
3,489,995	-		GFF3450	0.43	+0.6
3,489,996	-		GFF3450	0.43	-1.4
3,489,999	-		GFF3450	0.43	-0.5
3,489,999	-		GFF3450	0.43	-1.5
3,490,001	-		GFF3450	0.44	+0.8
3,490,001	-		GFF3450	0.44	+1.3
3,490,001	-		GFF3450	0.44	+0.4
3,490,040	+		GFF3450	0.48	+0.4
3,490,040	+		GFF3450	0.48	+0.4
3,490,040	+		GFF3450	0.48	+0.7
3,490,040	+		GFF3450	0.48	+0.3
3,490,048	-		GFF3450	0.49	-2.1
3,490,080	+		GFF3450	0.53	+0.6
3,490,086	+		GFF3450	0.54	-2.3
3,490,086	+		GFF3450	0.54	-0.5
3,490,087	+		GFF3450	0.54	-0.5
3,490,088	-		GFF3450	0.54	-1.5
3,490,092	+		GFF3450	0.54	+0.0
3,490,092	+		GFF3450	0.54	-0.3
3,490,093	+		GFF3450	0.55	-1.3
3,490,094	-		GFF3450	0.55	-0.9
3,490,094	-		GFF3450	0.55	-1.9
3,490,096	-		GFF3450	0.55	+0.2
3,490,100	-		GFF3450	0.55	-1.1
3,490,157	+		GFF3450	0.62	+0.1
3,490,162	+		GFF3450	0.63	-1.9
3,490,165	-		GFF3450	0.63	+0.4
3,490,179	-		GFF3450	0.65	+0.5
3,490,205	+		GFF3450	0.68	+0.6
3,490,225	+		GFF3450	0.70	-1.4
3,490,303	+		GFF3450	0.79	+0.6
3,490,311	-		GFF3450	0.80	-0.7
3,490,319	-		GFF3450	0.81	-1.6
3,490,344	+		GFF3450	0.84	-0.9
3,490,344	+		GFF3450	0.84	-0.4
3,490,351	-		GFF3450	0.85	-1.0
3,490,352	-		GFF3450	0.85	-0.4
3,490,367	+		GFF3450	0.87	-0.2
3,490,367	+		GFF3450	0.87	-1.9
3,490,367	+		GFF3450	0.87	-0.5
3,490,373	+		GFF3450	0.88	-1.2
3,490,381	+		GFF3450	0.89	-0.5
3,490,398	+				-1.0
3,490,404	-				-0.1
3,490,421	+				-2.5
3,490,421	+				+1.5
3,490,425	-				-1.2
3,490,425	-				-2.0
3,490,439	+				+1.3
3,490,447	-				-0.2
3,490,447	-				-1.8
3,490,447	-				-0.2
3,490,452	-				-0.4
3,490,481	+				-1.6
3,490,486	+				-0.1
3,490,494	-				+0.8
3,490,494	-				-0.6
3,490,500	+				+1.1
3,490,505	+				-2.2
3,490,518	-				+0.0
3,490,587	+				-0.5
3,492,624	+				+0.4
3,492,624	+				+0.1
3,492,624	+				+0.1
3,492,624	+				-0.1
3,492,624	+				+0.5
3,492,624	+				+0.5
3,492,632	-				-1.4
3,492,632	-				-0.0
3,492,632	-				+0.3
3,492,632	-				+1.0
3,492,632	-				-0.0
3,492,632	-				+0.4
3,492,647	-				+0.4
3,492,661	+				-0.7
3,492,669	-				-1.2
3,492,669	-				+0.6
3,492,669	-				-0.9
3,492,671	+				+0.3
3,492,771	-		GFF3452	0.13	-1.6
3,492,809	-		GFF3452	0.16	-0.6
3,492,809	-		GFF3452	0.16	-1.4
3,492,809	-		GFF3452	0.16	-2.2
3,492,820	+		GFF3452	0.17	+0.2
3,492,826	-		GFF3452	0.17	-0.5
3,492,837	+		GFF3452	0.18	+0.8
3,492,854	-		GFF3452	0.20	-0.6
3,492,875	-		GFF3452	0.21	-0.6
3,492,877	+		GFF3452	0.21	+1.7
3,492,891	+		GFF3452	0.22	+0.1
3,492,925	-		GFF3452	0.25	-0.6
3,492,927	+		GFF3452	0.25	-0.5
3,492,927	+		GFF3452	0.25	-2.2
3,492,927	+		GFF3452	0.25	-0.7
3,492,927	+		GFF3452	0.25	-2.3
3,492,927	+		GFF3452	0.25	-1.6
3,492,927	+		GFF3452	0.25	-0.5
3,492,935	-		GFF3452	0.26	-1.0
3,492,935	-		GFF3452	0.26	+1.1
3,492,935	-		GFF3452	0.26	-0.8
3,492,935	-		GFF3452	0.26	+0.4
3,492,980	+		GFF3452	0.29	-1.5
3,492,983	+		GFF3452	0.30	+1.4
3,492,988	+		GFF3452	0.30	+0.7
3,493,001	+		GFF3452	0.31	-0.1
3,493,014	+		GFF3452	0.32	+0.1
3,493,014	+		GFF3452	0.32	+0.2
3,493,014	+		GFF3452	0.32	-1.1
3,493,033	+		GFF3452	0.34	-0.9
3,493,047	+		GFF3452	0.35	-0.3
3,493,068	+		GFF3452	0.36	-3.0
3,493,068	+		GFF3452	0.36	-0.2
3,493,068	+		GFF3452	0.36	-1.3
3,493,073	+		GFF3452	0.37	+0.4
3,493,073	+		GFF3452	0.37	-1.3
3,493,073	+		GFF3452	0.37	+0.2
3,493,076	-		GFF3452	0.37	+0.6
3,493,076	-		GFF3452	0.37	-1.7
3,493,081	-		GFF3452	0.37	+0.2
3,493,086	-		GFF3452	0.38	-0.5
3,493,092	+		GFF3452	0.38	-1.4
3,493,100	-		GFF3452	0.39	-0.3
3,493,110	-		GFF3452	0.40	-0.0
3,493,122	+		GFF3452	0.41	-0.0
3,493,122	+		GFF3452	0.41	-0.0
3,493,122	+		GFF3452	0.41	+0.7
3,493,122	+		GFF3452	0.41	-1.3
3,493,130	-		GFF3452	0.41	-0.5
3,493,130	-		GFF3452	0.41	+1.8
3,493,141	+		GFF3452	0.42	-0.9
3,493,155	+		GFF3452	0.43	-1.6
3,493,160	+		GFF3452	0.44	-1.2
3,493,160	+		GFF3452	0.44	+0.0
3,493,160	+		GFF3452	0.44	+0.3
3,493,163	-		GFF3452	0.44	+0.8
3,493,163	-		GFF3452	0.44	-1.4
3,493,163	-		GFF3452	0.44	-0.3
3,493,168	-		GFF3452	0.44	-1.5
3,493,168	-		GFF3452	0.44	-1.7
3,493,168	-		GFF3452	0.44	-0.5
3,493,177	+		GFF3452	0.45	-2.5
3,493,177	+		GFF3452	0.45	-1.3
3,493,188	+		GFF3452	0.46	+0.5
3,493,239	-		GFF3452	0.50	-0.1
3,493,251	+		GFF3452	0.51	+1.0
3,493,261	+		GFF3452	0.51	-0.5
3,493,264	-		GFF3452	0.52	-1.2
3,493,269	-		GFF3452	0.52	+0.4
3,493,350	-		GFF3452	0.58	+0.1
3,493,399	+		GFF3452	0.62	-2.2
3,493,406	+		GFF3452	0.63	+0.9
3,493,406	+		GFF3452	0.63	-0.0
3,493,412	+		GFF3452	0.63	-0.3
3,493,414	-		GFF3452	0.63	-2.2
3,493,414	-		GFF3452	0.63	-1.6
3,493,414	-		GFF3452	0.63	+1.0
3,493,414	-		GFF3452	0.63	+0.1
3,493,418	+		GFF3452	0.64	+0.1
3,493,462	+		GFF3452	0.67	-1.7
3,493,462	+		GFF3452	0.67	-0.1
3,493,462	+		GFF3452	0.67	+0.4
3,493,462	+		GFF3452	0.67	-2.7
3,493,463	+		GFF3452	0.67	-0.4
3,493,463	-		GFF3452	0.67	-1.7
3,493,492	+		GFF3452	0.70	+1.0
3,493,500	-		GFF3452	0.70	-1.6
3,493,500	-		GFF3452	0.70	-0.5
3,493,542	-		GFF3452	0.73	+0.9
3,493,571	-		GFF3452	0.76	+0.0
3,493,572	+		GFF3452	0.76	-0.6
3,493,574	+		GFF3452	0.76	-0.5
3,493,574	+		GFF3452	0.76	-0.5
3,493,574	+		GFF3452	0.76	-1.3