Strain Fitness in Sphingobium sp. HT1-2 around GFF3423

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,461,507	-		GFF3421	0.28	-0.0
3,461,563	+		GFF3421	0.37	+0.0
3,461,577	+		GFF3421	0.40	-1.4
3,461,577	+		GFF3421	0.40	-1.2
3,461,577	+		GFF3421	0.40	+0.1
3,461,580	+		GFF3421	0.40	-1.6
3,461,585	-		GFF3421	0.41	-0.2
3,461,585	-		GFF3421	0.41	-1.8
3,461,585	-		GFF3421	0.41	-0.5
3,461,585	-		GFF3421	0.41	-1.0
3,461,625	+		GFF3421	0.48	+1.0
3,461,638	-		GFF3421	0.51	+1.0
3,461,648	+		GFF3421	0.52	+0.8
3,461,662	+		GFF3421	0.55	+0.7
3,461,666	+		GFF3421	0.56	-2.0
3,461,681	+		GFF3421	0.58	+0.9
3,461,701	-		GFF3421	0.62	-0.3
3,461,703	-		GFF3421	0.62	-1.3
3,461,713	+		GFF3421	0.64	-0.9
3,461,721	-		GFF3421	0.65	+0.5
3,461,723	+		GFF3421	0.66	+0.6
3,461,724	+		GFF3421	0.66	-0.0
3,461,732	-		GFF3421	0.67	-0.8
3,461,736	+		GFF3421	0.68	+0.2
3,461,736	+		GFF3421	0.68	-1.0
3,461,736	+		GFF3421	0.68	-2.5
3,461,736	+		GFF3421	0.68	+0.2
3,461,744	-		GFF3421	0.69	+0.4
3,461,744	-		GFF3421	0.69	-0.9
3,461,744	-		GFF3421	0.69	-2.4
3,461,744	-		GFF3421	0.69	-0.1
3,461,755	+		GFF3421	0.71	+0.4
3,461,763	-		GFF3421	0.73	-1.3
3,461,773	-		GFF3421	0.74	-2.3
3,461,775	+		GFF3421	0.75	-0.7
3,461,775	+		GFF3421	0.75	+0.1
3,461,779	-		GFF3421	0.75	+1.0
3,461,806	+		GFF3421	0.80	-0.9
3,461,823	+		GFF3421	0.83	+0.4
3,461,823	+		GFF3421	0.83	+0.1
3,461,823	+		GFF3421	0.83	-0.9
3,461,825	-		GFF3421	0.84	-2.1
3,461,831	+		GFF3421	0.85	-0.4
3,461,831	-		GFF3421	0.85	-1.4
3,461,831	-		GFF3421	0.85	-0.6
3,461,838	+		GFF3421	0.86	-0.4
3,461,838	+		GFF3421	0.86	-1.0
3,461,839	-		GFF3421	0.86	-1.4
3,461,842	+		GFF3421	0.87	+0.5
3,461,851	-		GFF3421	0.88	+0.4
3,461,856	-		GFF3421	0.89	+0.5
3,461,864	-				-1.6
3,461,870	+				+0.7
3,461,887	-				-1.3
3,461,893	-				-1.2
3,461,910	-				-0.3
3,461,920	-				+0.7
3,461,930	-				+0.0
3,461,936	+				+0.8
3,461,941	+				+1.5
3,461,949	-				+0.5
3,461,954	-				-0.8
3,461,976	-		GFF3422	0.10	-0.2
3,462,014	+		GFF3422	0.16	-0.5
3,462,019	+		GFF3422	0.17	-0.6
3,462,022	-		GFF3422	0.18	+2.3
3,462,022	-		GFF3422	0.18	-0.3
3,462,027	-		GFF3422	0.18	-1.5
3,462,027	-		GFF3422	0.18	+0.2
3,462,027	-		GFF3422	0.18	+0.9
3,462,027	-		GFF3422	0.18	+0.7
3,462,034	+		GFF3422	0.20	-2.1
3,462,040	-		GFF3422	0.21	+0.3
3,462,042	+		GFF3422	0.21	+0.8
3,462,060	+		GFF3422	0.24	-1.2
3,462,068	-		GFF3422	0.25	-0.1
3,462,068	-		GFF3422	0.25	-2.5
3,462,068	-		GFF3422	0.25	-0.2
3,462,068	-		GFF3422	0.25	+1.0
3,462,071	+		GFF3422	0.26	-0.8
3,462,071	+		GFF3422	0.26	-1.4
3,462,071	+		GFF3422	0.26	+0.2
3,462,075	+		GFF3422	0.26	+1.0
3,462,083	-		GFF3422	0.28	-1.3
3,462,117	-		GFF3422	0.33	-0.5
3,462,141	+		GFF3422	0.37	-1.4
3,462,146	+		GFF3422	0.38	-0.4
3,462,146	+		GFF3422	0.38	-1.1
3,462,185	+		GFF3422	0.44	+0.4
3,462,185	+		GFF3422	0.44	+0.6
3,462,200	-		GFF3422	0.47	-0.7
3,462,202	+		GFF3422	0.47	-0.7
3,462,202	+		GFF3422	0.47	-0.8
3,462,210	-		GFF3422	0.48	-0.2
3,462,210	-		GFF3422	0.48	-0.1
3,462,210	-		GFF3422	0.48	+0.4
3,462,220	+		GFF3422	0.50	-1.1
3,462,220	-		GFF3422	0.50	-1.5
3,462,228	+		GFF3422	0.51	-0.4
3,462,228	-		GFF3422	0.51	-0.4
3,462,236	-		GFF3422	0.53	-0.2
3,462,244	-		GFF3422	0.54	-0.2
3,462,248	+		GFF3422	0.55	-1.1
3,462,248	+		GFF3422	0.55	+1.0
3,462,248	+		GFF3422	0.55	-1.2
3,462,249	+		GFF3422	0.55	-0.2
3,462,253	+		GFF3422	0.55	-0.5
3,462,256	-		GFF3422	0.56	-0.5
3,462,261	-		GFF3422	0.57	-0.2
3,462,261	-		GFF3422	0.57	-0.7
3,462,262	+		GFF3422	0.57	-0.8
3,462,270	-		GFF3422	0.58	+0.0
3,462,270	-		GFF3422	0.58	-1.0
3,462,295	-		GFF3422	0.62	-0.2
3,462,314	+		GFF3422	0.65	-2.8
3,462,329	-		GFF3422	0.68	-0.6
3,462,341	+		GFF3422	0.70	-0.8
3,462,349	-		GFF3422	0.71	-1.1
3,462,349	-		GFF3422	0.71	-0.1
3,462,360	+		GFF3422	0.73	-1.2
3,462,402	+		GFF3422	0.80	+1.6
3,462,440	+		GFF3422	0.86	-0.2
3,462,444	+		GFF3422	0.87	-1.2
3,462,448	-		GFF3422	0.87	+0.5
3,462,453	+		GFF3422	0.88	+0.1
3,462,472	+				+0.7
3,462,497	+				+0.5
3,462,503	+				+0.9
3,462,503	+				-1.5
3,462,511	-				+0.3
3,463,754	+				+0.4
3,463,759	+				-1.3
3,463,759	+				+0.1
3,463,760	+				-1.3
3,463,764	+				-2.0
3,463,767	-				-1.3
3,463,772	-				-0.2
3,463,789	-				-1.8
3,463,793	+				+0.4
3,463,803	+				-0.1
3,463,803	+				-0.3
3,463,803	+				-0.8
3,463,803	+				+0.7
3,463,803	+				-1.3
3,463,811	-				-1.4
3,463,811	-				+0.8
3,463,826	+				-1.1
3,463,829	-				-0.2
3,463,829	-				-1.6
3,463,831	+				+0.7
3,463,833	+				-0.3
3,463,834	-				-2.1
3,463,834	-				-0.6
3,463,876	+		GFF3424	0.11	+1.3
3,463,952	+		GFF3424	0.16	+0.6
3,463,962	-		GFF3424	0.16	-1.6
3,464,011	+		GFF3424	0.19	-1.3
3,464,023	-		GFF3424	0.20	+0.8
3,464,050	+		GFF3424	0.21	-1.0
3,464,055	+		GFF3424	0.21	+1.0
3,464,058	-		GFF3424	0.22	-1.6
3,464,082	+		GFF3424	0.23	+0.7
3,464,082	+		GFF3424	0.23	-2.0
3,464,090	-		GFF3424	0.23	-0.0
3,464,090	-		GFF3424	0.23	+0.7
3,464,109	+		GFF3424	0.25	+1.1
3,464,109	+		GFF3424	0.25	-0.5
3,464,109	+		GFF3424	0.25	+0.2
3,464,109	+		GFF3424	0.25	+0.8
3,464,117	-		GFF3424	0.25	-3.0
3,464,117	-		GFF3424	0.25	-1.2
3,464,117	-		GFF3424	0.25	+1.0
3,464,117	-		GFF3424	0.25	-0.5
3,464,117	-		GFF3424	0.25	-3.0
3,464,124	+		GFF3424	0.25	-1.7
3,464,162	+		GFF3424	0.28	-2.0
3,464,198	+		GFF3424	0.30	-3.2
3,464,198	+		GFF3424	0.30	-0.7
3,464,238	-		GFF3424	0.32	-1.3
3,464,329	+		GFF3424	0.37	-0.2
3,464,329	+		GFF3424	0.37	+0.2
3,464,329	+		GFF3424	0.37	-0.8
3,464,334	+		GFF3424	0.37	-2.6
3,464,334	+		GFF3424	0.37	-0.0
3,464,334	+		GFF3424	0.37	-2.4
3,464,334	+		GFF3424	0.37	-1.3
3,464,337	-		GFF3424	0.38	-0.7
3,464,342	-		GFF3424	0.38	+0.1
3,464,342	-		GFF3424	0.38	-1.6
3,464,348	-		GFF3424	0.38	-0.4
3,464,383	+		GFF3424	0.40	-0.3
3,464,391	-		GFF3424	0.41	-0.0
3,464,411	+		GFF3424	0.42	+1.2
3,464,415	+		GFF3424	0.42	+0.0
3,464,418	-		GFF3424	0.42	-1.7
3,464,419	-		GFF3424	0.42	-1.5
3,464,423	-		GFF3424	0.42	-0.7
3,464,423	-		GFF3424	0.42	-0.3
3,464,423	-		GFF3424	0.42	-0.5
3,464,431	+		GFF3424	0.43	-1.4
3,464,434	-		GFF3424	0.43	+0.1
3,464,434	-		GFF3424	0.43	-1.8
3,464,452	+		GFF3424	0.44	-1.0
3,464,456	-		GFF3424	0.44	+0.8
3,464,460	-		GFF3424	0.45	+0.8
3,464,478	-		GFF3424	0.46	-2.5
3,464,480	+		GFF3424	0.46	-0.7
3,464,480	+		GFF3424	0.46	-1.6
3,464,483	-		GFF3424	0.46	-0.5
3,464,488	-		GFF3424	0.46	-0.5
3,464,488	-		GFF3424	0.46	-1.3
3,464,488	-		GFF3424	0.46	-1.3
3,464,488	-		GFF3424	0.46	-2.2
3,464,488	-		GFF3424	0.46	-1.2
3,464,488	-		GFF3424	0.46	-0.9
3,464,488	-		GFF3424	0.46	-2.2
3,464,488	-		GFF3424	0.46	-0.4
3,464,488	-		GFF3424	0.46	-2.0
3,464,488	-		GFF3424	0.46	-2.3
3,464,500	-		GFF3424	0.47	-0.2
3,464,512	-		GFF3424	0.48	+0.2
3,464,531	+		GFF3424	0.49	+1.2
3,464,542	+		GFF3424	0.49	+0.5
3,464,562	-		GFF3424	0.50	-1.6
3,464,574	-		GFF3424	0.51	-3.0
3,464,578	+		GFF3424	0.51	+0.6
3,464,578	+		GFF3424	0.51	-0.2
3,464,595	+		GFF3424	0.52	-0.2
3,464,603	-		GFF3424	0.53	-0.5
3,464,610	-		GFF3424	0.53	-0.9
3,464,623	+		GFF3424	0.54	-0.7
3,464,623	+		GFF3424	0.54	-0.5
3,464,631	+		GFF3424	0.54	+0.1
3,464,639	-		GFF3424	0.55	-1.0
3,464,639	-		GFF3424	0.55	+1.0
3,464,648	+		GFF3424	0.55	+0.3