Strain Fitness in Sphingobium sp. HT1-2 around GFF3301

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,355,185	-				-1.2
3,355,203	+				-0.0
3,355,203	+				-1.5
3,355,203	+				-0.5
3,355,204	+				-0.9
3,355,211	-				-1.1
3,355,211	-				-0.8
3,355,229	+				+1.0
3,355,257	+				+0.7
3,355,259	+				-0.5
3,355,259	+				-1.4
3,355,267	-				+0.3
3,355,273	+				-0.7
3,355,281	-				-0.9
3,355,283	+				-0.9
3,355,283	+				+1.1
3,355,283	+				-2.2
3,355,283	+				+0.4
3,355,286	-				-1.3
3,355,286	-				-0.2
3,355,286	-				-1.7
3,355,291	-				-0.0
3,355,291	-				+0.2
3,355,308	-				-0.5
3,355,313	-				+0.3
3,355,315	+				-1.2
3,355,318	-				+0.7
3,355,318	-				+0.1
3,355,318	-				-0.6
3,355,318	-				-1.6
3,355,318	-				+0.4
3,355,320	+		GFF3301	0.10	+0.5
3,355,320	+		GFF3301	0.10	+0.3
3,355,320	+		GFF3301	0.10	+0.0
3,355,328	-		GFF3301	0.11	+1.2
3,355,328	-		GFF3301	0.11	+0.3
3,355,328	-		GFF3301	0.11	-0.0
3,355,328	-		GFF3301	0.11	-1.2
3,355,336	+		GFF3301	0.11	-0.1
3,355,375	+		GFF3301	0.14	-0.0
3,355,375	+		GFF3301	0.14	+0.0
3,355,375	+		GFF3301	0.14	-1.6
3,355,375	+		GFF3301	0.14	-0.4
3,355,375	+		GFF3301	0.14	+0.3
3,355,383	-		GFF3301	0.15	+0.7
3,355,399	+		GFF3301	0.16	-0.7
3,355,406	-		GFF3301	0.17	-0.6
3,355,417	+		GFF3301	0.18	+0.2
3,355,417	+		GFF3301	0.18	-1.2
3,355,422	-		GFF3301	0.18	-2.5
3,355,422	-		GFF3301	0.18	-0.3
3,355,440	+		GFF3301	0.19	-1.1
3,355,440	+		GFF3301	0.19	-0.0
3,355,445	+		GFF3301	0.20	+0.7
3,355,447	-		GFF3301	0.20	-1.2
3,355,471	-		GFF3301	0.22	+0.3
3,355,476	+		GFF3301	0.22	-1.5
3,355,484	-		GFF3301	0.23	-1.6
3,355,490	-		GFF3301	0.23	-1.7
3,355,492	+		GFF3301	0.23	-0.2
3,355,492	+		GFF3301	0.23	-0.0
3,355,497	+		GFF3301	0.24	-0.3
3,355,500	-		GFF3301	0.24	-0.9
3,355,500	-		GFF3301	0.24	-0.5
3,355,504	+		GFF3301	0.24	-0.4
3,355,505	-		GFF3301	0.24	-0.8
3,355,506	-		GFF3301	0.25	-1.2
3,355,506	-		GFF3301	0.25	-0.2
3,355,507	-		GFF3301	0.25	-1.4
3,355,528	+		GFF3301	0.26	+0.6
3,355,538	+		GFF3301	0.27	-0.5
3,355,588	+		GFF3301	0.31	-0.8
3,355,591	-		GFF3301	0.31	+0.1
3,355,596	-		GFF3301	0.31	+0.2
3,355,603	+		GFF3301	0.32	+0.4
3,355,603	+		GFF3301	0.32	-0.1
3,355,603	+		GFF3301	0.32	-0.7
3,355,603	+		GFF3301	0.32	-0.1
3,355,603	+		GFF3301	0.32	+2.4
3,355,603	+		GFF3301	0.32	-2.2
3,355,608	+		GFF3301	0.32	-0.5
3,355,608	+		GFF3301	0.32	-1.9
3,355,608	+		GFF3301	0.32	-2.2
3,355,611	-		GFF3301	0.33	-1.8
3,355,611	-		GFF3301	0.33	-1.5
3,355,611	-		GFF3301	0.33	-0.8
3,355,611	-		GFF3301	0.33	-0.7
3,355,613	+		GFF3301	0.33	-0.8
3,355,613	+		GFF3301	0.33	-2.5
3,355,616	-		GFF3301	0.33	-1.9
3,355,616	-		GFF3301	0.33	-2.2
3,355,616	-		GFF3301	0.33	-1.3
3,355,616	-		GFF3301	0.33	-0.1
3,355,616	-		GFF3301	0.33	+0.6
3,355,616	-		GFF3301	0.33	+0.6
3,355,616	-		GFF3301	0.33	-0.6
3,355,621	-		GFF3301	0.33	+0.6
3,355,621	-		GFF3301	0.33	-2.0
3,355,651	+		GFF3301	0.36	-1.9
3,355,651	+		GFF3301	0.36	+0.4
3,355,666	+		GFF3301	0.37	-0.5
3,355,671	+		GFF3301	0.37	+1.2
3,355,671	+		GFF3301	0.37	+0.3
3,355,674	-		GFF3301	0.38	+0.3
3,355,674	-		GFF3301	0.38	+0.2
3,355,707	-		GFF3301	0.40	+0.1
3,355,717	+		GFF3301	0.41	+1.1
3,355,732	-		GFF3301	0.42	-0.4
3,355,765	+		GFF3301	0.45	-0.0
3,355,765	+		GFF3301	0.45	-2.5
3,355,765	+		GFF3301	0.45	+1.2
3,355,765	+		GFF3301	0.45	+0.3
3,355,765	+		GFF3301	0.45	-1.0
3,355,765	+		GFF3301	0.45	-1.3
3,355,765	+		GFF3301	0.45	-0.8
3,355,773	-		GFF3301	0.45	-1.0
3,355,773	-		GFF3301	0.45	+1.3
3,355,773	-		GFF3301	0.45	+0.4
3,355,783	-		GFF3301	0.46	-0.1
3,355,783	-		GFF3301	0.46	+1.1
3,355,805	+		GFF3301	0.48	-0.9
3,355,819	-		GFF3301	0.49	+0.5
3,355,823	-		GFF3301	0.49	-1.5
3,355,828	-		GFF3301	0.49	+0.3
3,355,837	+		GFF3301	0.50	-0.8
3,355,883	-		GFF3301	0.54	-1.7
3,355,899	-		GFF3301	0.55	+0.3
3,355,908	-		GFF3301	0.56	-1.9
3,355,931	-		GFF3301	0.57	-1.1
3,355,931	-		GFF3301	0.57	-0.2
3,355,949	+		GFF3301	0.59	-0.5
3,355,964	-		GFF3301	0.60	+0.8
3,355,969	+		GFF3301	0.60	-1.3
3,355,979	+		GFF3301	0.61	+0.4
3,355,982	-		GFF3301	0.61	-0.5
3,355,997	-		GFF3301	0.62	+0.6
3,356,022	-		GFF3301	0.64	-1.7
3,356,038	+		GFF3301	0.66	-1.2
3,356,038	+		GFF3301	0.66	+0.3
3,356,043	-		GFF3301	0.66	+1.0
3,356,046	-		GFF3301	0.66	+0.2
3,356,051	-		GFF3301	0.67	-0.3
3,356,055	+		GFF3301	0.67	-2.6
3,356,060	+		GFF3301	0.67	-1.5
3,356,064	+		GFF3301	0.68	-1.0
3,356,064	+		GFF3301	0.68	-0.1
3,356,064	+		GFF3301	0.68	-0.1
3,356,070	+		GFF3301	0.68	-0.5
3,356,072	-		GFF3301	0.68	-1.2
3,356,127	+		GFF3301	0.73	-0.1
3,356,147	-		GFF3301	0.74	-2.4
3,356,149	+		GFF3301	0.74	-2.3
3,356,154	+		GFF3301	0.75	-1.7
3,356,213	+		GFF3301	0.79	-2.1
3,356,231	-		GFF3301	0.81	+0.2
3,356,239	+		GFF3301	0.81	-0.3
3,356,246	+		GFF3301	0.82	-1.4
3,356,251	+		GFF3301	0.82	+0.1
3,356,251	+		GFF3301	0.82	-0.5
3,356,256	+		GFF3301	0.83	+0.1
3,356,259	-		GFF3301	0.83	+0.6
3,356,264	-		GFF3301	0.83	+0.3
3,356,279	+		GFF3301	0.84	-0.9
3,356,279	+		GFF3301	0.84	-0.9
3,356,291	-		GFF3301	0.85	-3.0
3,356,302	-		GFF3301	0.86	-0.4
3,356,318	-		GFF3301	0.87	-2.0
3,356,318	-		GFF3301	0.87	+1.6
3,356,329	+		GFF3301	0.88	+0.8
3,356,329	+		GFF3301	0.88	-0.6
3,356,329	+		GFF3301	0.88	-1.9
3,356,329	+		GFF3301	0.88	-0.4
3,356,329	+		GFF3301	0.88	-0.0
3,356,329	+		GFF3301	0.88	-2.3
3,356,329	+		GFF3301	0.88	-1.2
3,356,329	+		GFF3301	0.88	+0.2
3,356,329	+		GFF3301	0.88	+1.0
3,356,329	+		GFF3301	0.88	+0.8
3,356,329	+		GFF3301	0.88	-0.3
3,356,329	+		GFF3301	0.88	+0.5
3,356,329	+		GFF3301	0.88	-2.1
3,356,337	-		GFF3301	0.89	+1.4
3,356,337	-		GFF3301	0.89	-0.5
3,356,337	-		GFF3301	0.89	-0.2
3,356,337	-		GFF3301	0.89	-0.7
3,356,337	-		GFF3301	0.89	-1.2
3,356,337	-		GFF3301	0.89	-0.3
3,356,337	-		GFF3301	0.89	-0.9
3,356,337	-		GFF3301	0.89	-0.1
3,356,339	+		GFF3301	0.89	-0.5
3,356,339	+		GFF3301	0.89	-2.1
3,356,339	+		GFF3301	0.89	-0.2
3,356,339	+		GFF3301	0.89	-1.1
3,356,339	+		GFF3301	0.89	-0.9
3,356,339	+		GFF3301	0.89	-0.6
3,356,339	+		GFF3301	0.89	+0.6
3,356,342	-		GFF3301	0.89	-0.6
3,356,342	-		GFF3301	0.89	-0.2
3,356,347	-		GFF3301	0.90	-2.5
3,356,347	-		GFF3301	0.90	-1.0
3,356,348	-		GFF3301	0.90	-1.1
3,356,352	-				-1.8
3,356,364	+				-0.5
3,356,370	+				+0.3
3,356,384	+				-2.5
3,356,391	+				-2.4
3,356,391	+				+0.2
3,356,399	-				-0.7
3,356,418	+				-0.2
3,356,418	+				-0.2
3,356,418	+				-1.3
3,356,418	+				+0.2
3,356,423	+				+0.6
3,356,424	+				+1.0
3,356,426	-				+0.2
3,356,426	-				+0.1
3,356,432	-				-0.0
3,356,434	+				+0.0
3,356,456	+				+0.1
3,356,456	+				+0.9
3,356,456	+				-1.5
3,356,456	+				+0.4
3,356,456	+				+0.5
3,356,456	+				-0.9
3,356,456	+				-0.9
3,356,456	+				-0.9
3,356,456	+				+0.0
3,356,456	+				-0.0
3,356,456	+				+0.0
3,356,456	+				+0.7
3,356,456	+				+0.1
3,356,456	+				-0.2
3,356,456	+				-0.8
3,356,456	+				-0.3
3,356,456	+				+0.5
3,356,456	+				+0.4
3,356,456	+				-0.2
3,356,456	+				-0.2
3,356,456	+				+0.6
3,356,464	+				-0.6
3,356,464	-				-1.8
3,356,464	-				-0.1
3,356,464	-				+0.9
3,356,464	-				-0.6
3,356,464	-				-1.1
3,356,464	-				-0.3
3,356,464	-				-0.4
3,356,464	-				-1.3
3,356,464	-				-1.0
3,356,464	-				+0.6
3,356,464	-				-1.2
3,356,464	-				-0.0
3,356,464	-				+0.3
3,356,464	-				-1.1
3,356,464	-				+0.3
3,356,464	-				+0.4
3,356,464	-				-2.4
3,356,464	-				-2.7
3,356,464	-				-0.9
3,356,487	+				+0.8
3,356,487	+				-1.2
3,356,487	+				+0.6
3,356,487	+				-0.4
3,356,487	+				-2.5
3,356,487	+				-1.2
3,356,487	+				+0.9
3,356,487	+				+0.1
3,356,490	-				-0.2
3,356,493	-				-0.3
3,356,495	-				-2.4
3,356,495	-				-0.2
3,356,495	-				-2.3
3,356,495	-				+0.6
3,356,495	-				+0.4
3,356,495	-				+1.9
3,356,495	-				+1.3
3,356,495	-				-0.7
3,356,495	-				+0.1
3,356,504	+				-2.9
3,356,504	+				-0.6
3,356,504	+				-2.0
3,356,509	+				-0.8
3,356,509	+				-1.9
3,356,512	+				-0.5
3,356,512	-				+0.3
3,356,517	-				-0.8
3,356,522	-				+0.6
3,356,527	+		GFF3302	0.10	-0.2
3,356,527	+		GFF3302	0.10	+0.0
3,356,527	+		GFF3302	0.10	-1.7
3,356,527	+		GFF3302	0.10	-0.5
3,356,535	-		GFF3302	0.12	-0.6
3,356,537	+		GFF3302	0.12	-0.7
3,356,537	+		GFF3302	0.12	-0.1
3,356,537	+		GFF3302	0.12	+1.1
3,356,537	+		GFF3302	0.12	-1.6
3,356,540	-		GFF3302	0.13	-1.7
3,356,542	+		GFF3302	0.13	-0.7
3,356,545	-		GFF3302	0.14	-1.0
3,356,550	-		GFF3302	0.15	-0.9
3,356,621	+		GFF3302	0.30	+0.7
3,356,633	-		GFF3302	0.32	-1.3
3,356,635	+		GFF3302	0.33	+0.4
3,356,661	+		GFF3302	0.38	+0.7
3,356,688	+		GFF3302	0.44	-0.3
3,356,693	+		GFF3302	0.45	-0.0
3,356,708	-		GFF3302	0.48	-2.5
3,356,728	+		GFF3302	0.52	-0.5
3,356,730	-		GFF3302	0.53	-0.2
3,356,742	+		GFF3302	0.55	+0.7
3,356,743	-		GFF3302	0.56	-2.1
3,356,746	+		GFF3302	0.56	+0.1
3,356,750	+		GFF3302	0.57	-1.3
3,356,754	+		GFF3302	0.58	+0.8
3,356,783	+		GFF3302	0.64	+0.1
3,356,788	+		GFF3302	0.65	-2.7
3,356,794	-		GFF3302	0.66	-0.9
3,356,854	-		GFF3302	0.79	-1.0
3,356,865	-		GFF3302	0.81	-1.6
3,356,891	-		GFF3302	0.87	+0.5
3,356,912	+				+0.2
3,356,921	+				-0.7
3,356,929	-				-1.7
3,356,949	+				+1.0
3,356,954	-				-1.1
3,356,958	+				-1.7
3,356,966	+				-2.3
3,356,966	-				+0.2
3,356,987	+		GFF3303	0.15	+0.2
3,356,995	-		GFF3303	0.19	-1.9
3,357,001	-		GFF3303	0.21	+0.5
3,357,032	+		GFF3303	0.34	-0.0
3,357,048	-		GFF3303	0.41	+0.3
3,357,052	+		GFF3303	0.43	-0.2
3,357,060	-		GFF3303	0.46	-0.7
3,357,060	-		GFF3303	0.46	+0.2
3,357,062	+		GFF3303	0.47	+0.3
3,357,062	+		GFF3303	0.47	-0.6
3,357,070	+		GFF3303	0.50	-0.2
3,357,070	-		GFF3303	0.50	-0.9
3,357,070	-		GFF3303	0.50	-0.2
3,357,081	+		GFF3303	0.55	-0.3
3,357,125	-		GFF3303	0.73	-0.2
3,357,125	-		GFF3303	0.73	+0.4
3,357,161	+		GFF3303	0.89	-1.6
3,357,161	+		GFF3303	0.89	-0.1
3,357,169	-				+0.2
3,357,169	-				-2.0
3,357,169	-				-2.4
3,357,195	+				-0.0
3,357,210	+				-1.5
3,357,210	+				-1.6
3,357,210	+				-2.2
3,357,210	+				+0.3
3,357,210	+				+0.5
3,357,210	+				-1.2
3,357,210	+				-0.6
3,357,210	+				+0.3
3,357,210	+				+0.5
3,357,210	+				+0.8
3,357,210	+				-1.7
3,357,210	+				+0.2
3,357,210	+				-0.9
3,357,218	-				-0.5
3,357,218	-				+1.2
3,357,218	-				-2.0
3,357,218	-				+0.3
3,357,218	-				-1.1
3,357,218	-				+0.4
3,357,218	-				+0.3
3,357,218	-				-1.2
3,357,218	-				+0.6
3,357,218	-				-0.5
3,357,218	-				-0.5
3,357,218	-				+0.3
3,357,242	-				+0.1
3,357,248	+				+0.6
3,357,269	+				-2.0
3,357,269	+				-1.6
3,357,269	+				-1.2
3,357,269	+				-0.2
3,357,269	+				-2.4
3,357,269	+				+0.4
3,357,269	+				+0.9
3,357,270	-				+0.9
3,357,276	-				+0.2
3,357,276	-				-2.2
3,357,277	-				+0.7
3,357,277	-				+0.1
3,357,277	-				-1.4
3,357,277	-				-0.5
3,357,277	-				-1.5
3,357,285	+		GFF3304	0.11	-0.8
3,357,285	+		GFF3304	0.11	-1.0
3,357,285	+		GFF3304	0.11	-1.3
3,357,288	+		GFF3304	0.12	-0.5
3,357,293	-		GFF3304	0.13	+0.4
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