Strain Fitness in Sphingobium sp. HT1-2 around GFF3269

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,322,668	+				-1.7
3,322,674	-				+0.3
3,322,676	-				+0.4
3,322,676	-				-1.1
3,322,676	-				-0.1
3,322,691	+				-1.0
3,322,691	+				+0.5
3,322,691	+				-0.2
3,322,699	-				-0.8
3,322,699	-				+0.6
3,322,699	-				-0.5
3,322,699	-				-0.3
3,322,708	-				-0.8
3,322,709	-				-1.5
3,322,731	+				-1.6
3,322,746	+				-0.7
3,322,782	+				-2.7
3,322,790	-				-0.6
3,322,827	+		GFF3268	0.14	+0.1
3,322,827	+		GFF3268	0.14	+1.2
3,322,827	+		GFF3268	0.14	-0.0
3,322,827	+		GFF3268	0.14	+0.4
3,322,827	+		GFF3268	0.14	-1.4
3,322,835	-		GFF3268	0.15	+0.2
3,322,870	+		GFF3268	0.23	-0.8
3,322,870	+		GFF3268	0.23	+0.1
3,322,871	-		GFF3268	0.23	+0.8
3,322,878	-		GFF3268	0.25	+1.4
3,322,880	-		GFF3268	0.25	-0.8
3,322,887	+		GFF3268	0.27	+1.5
3,322,887	+		GFF3268	0.27	-1.8
3,322,887	+		GFF3268	0.27	-0.1
3,322,911	-		GFF3268	0.32	-0.1
3,322,940	+		GFF3268	0.38	+0.6
3,322,948	-		GFF3268	0.39	+0.4
3,322,948	-		GFF3268	0.39	+1.0
3,322,955	+		GFF3268	0.41	-1.3
3,322,965	+		GFF3268	0.43	-0.3
3,322,973	+		GFF3268	0.45	+0.3
3,322,973	-		GFF3268	0.45	-1.1
3,322,981	-		GFF3268	0.46	+0.9
3,322,990	+		GFF3268	0.48	+0.5
3,323,003	-		GFF3268	0.51	-0.0
3,323,008	-		GFF3268	0.52	+1.2
3,323,026	+		GFF3268	0.56	-0.9
3,323,026	+		GFF3268	0.56	-1.2
3,323,027	+		GFF3268	0.56	-2.6
3,323,035	-		GFF3268	0.58	+0.9
3,323,049	+		GFF3268	0.61	+0.4
3,323,049	+		GFF3268	0.61	-1.1
3,323,049	+		GFF3268	0.61	-2.4
3,323,049	+		GFF3268	0.61	+0.3
3,323,049	+		GFF3268	0.61	-0.1
3,323,049	+		GFF3268	0.61	-1.7
3,323,057	-		GFF3268	0.63	+0.5
3,323,057	-		GFF3268	0.63	-0.3
3,323,057	-		GFF3268	0.63	+0.1
3,323,057	-		GFF3268	0.63	-0.2
3,323,064	+		GFF3268	0.64	+0.4
3,323,068	+		GFF3268	0.65	-0.1
3,323,100	+		GFF3268	0.72	+0.9
3,323,100	+		GFF3268	0.72	+1.1
3,323,108	-		GFF3268	0.73	-2.0
3,323,108	-		GFF3268	0.73	+0.0
3,323,123	+		GFF3268	0.77	-0.0
3,323,129	+		GFF3268	0.78	+0.1
3,323,129	+		GFF3268	0.78	-0.6
3,323,155	+		GFF3268	0.83	-1.7
3,323,202	+				-0.8
3,323,223	-				-0.3
3,323,243	+				+1.3
3,323,243	+				-0.5
3,323,245	+				-0.5
3,323,253	+				-0.1
3,323,253	+				+0.7
3,323,263	+				-0.0
3,323,263	+				-0.5
3,323,263	+				+0.2
3,323,268	+				-0.8
3,323,271	-				-0.1
3,323,271	-				+1.3
3,323,282	+				+0.2
3,323,282	+				-0.1
3,323,282	+				-1.3
3,323,282	+				-1.9
3,323,282	+				-1.2
3,323,282	+				+0.8
3,323,282	+				-0.4
3,323,285	-				-0.4
3,323,287	+				-0.7
3,323,290	-				-1.3
3,323,294	+				+1.5
3,323,295	-				-1.7
3,323,295	-				-0.3
3,323,295	-				-0.6
3,323,295	-				-0.3
3,323,295	-				-0.2
3,323,295	-				-1.1
3,323,318	+				-0.9
3,323,328	+				-1.4
3,323,362	-				-1.0
3,323,383	+				-0.6
3,323,388	+				+0.5
3,323,406	-				+0.2
3,323,418	+		GFF3269	0.10	-1.1
3,323,418	+		GFF3269	0.10	-0.7
3,323,423	+		GFF3269	0.13	-0.2
3,323,426	-		GFF3269	0.15	-0.6
3,323,431	-		GFF3269	0.18	+0.0
3,323,449	+		GFF3269	0.28	+0.8
3,323,471	-		GFF3269	0.41	+0.5
3,323,489	+		GFF3269	0.51	+0.3
3,323,489	+		GFF3269	0.51	+0.9
3,323,489	+		GFF3269	0.51	+0.4
3,323,493	+		GFF3269	0.53	-0.5
3,323,494	+		GFF3269	0.54	-1.2
3,323,494	+		GFF3269	0.54	+0.9
3,323,497	-		GFF3269	0.56	-1.7
3,323,506	+		GFF3269	0.61	+0.6
3,323,512	+		GFF3269	0.64	-1.0
3,323,522	-		GFF3269	0.70	-0.8
3,323,522	-		GFF3269	0.70	+0.5
3,323,557	+				-0.3
3,323,561	-				+0.5
3,323,609	+				-1.6
3,323,615	-				+0.3
3,323,627	-				-0.7
3,323,633	+				-1.1
3,323,645	+				+1.4
3,323,645	+				+0.7
3,323,655	+				-0.0
3,323,655	+				+0.7
3,323,663	-				-1.3
3,323,668	-				-1.3
3,323,679	+				+1.1
3,323,679	+				+0.5
3,323,679	+				-0.3
3,323,684	+				-0.5
3,323,687	+				-0.3
3,323,687	-				-0.6
3,323,687	-				+0.1
3,323,687	-				-0.0
3,323,689	+				+0.3
3,323,689	+				-0.6
3,323,708	+				-1.3
3,323,708	+				+0.0
3,323,708	+				-0.9
3,323,708	+				-0.2
3,323,715	+				+1.6
3,323,715	+				+0.4
3,323,715	+				+0.8
3,323,715	+				+0.9
3,323,715	+				-0.1
3,323,715	+				-0.5
3,323,716	-				+0.3
3,323,716	-				+0.1
3,323,716	-				-0.4
3,323,716	-				-2.4
3,323,716	-				-0.9
3,323,716	-				-2.0
3,323,716	-				+0.3
3,323,716	-				-1.3
3,323,716	-				-0.2
3,323,716	-				+0.9
3,323,716	-				-0.2
3,323,716	-				-1.6
3,323,716	-				-0.2
3,323,716	-				+0.0
3,323,716	-				-0.1
3,323,716	-				-1.0
3,323,716	-				-0.4
3,323,720	+				-0.9
3,323,720	+				-0.2
3,323,720	+				+0.2
3,323,720	+				-0.9
3,323,720	+				-0.8
3,323,720	+				-0.4
3,323,722	+				-0.3
3,323,722	+				-0.3
3,323,722	+				-0.2
3,323,722	+				+0.3
3,323,722	+				-1.3
3,323,722	+				-0.7
3,323,722	+				-0.5
3,323,722	+				-2.0
3,323,722	+				-0.9
3,323,723	-				+1.2
3,323,728	-				+0.5
3,323,728	-				+0.4
3,323,728	-				-0.0
3,323,728	-				-0.3
3,323,728	-				-0.6
3,323,730	-				-0.3
3,323,751	+				-1.7
3,323,770	-		GFF3270	0.11	+0.7
3,323,776	+		GFF3270	0.12	+0.4
3,323,783	+		GFF3270	0.13	-1.7
3,323,791	-		GFF3270	0.13	-0.9
3,323,802	+		GFF3270	0.15	-2.2
3,323,810	-		GFF3270	0.15	-0.2
3,323,819	+		GFF3270	0.16	+0.6
3,323,828	-		GFF3270	0.17	+0.2
3,323,850	-		GFF3270	0.20	-0.6
3,323,872	+		GFF3270	0.22	+0.1
3,323,892	-		GFF3270	0.24	-0.7
3,323,896	+		GFF3270	0.24	-0.5
3,323,942	+		GFF3270	0.29	-1.5
3,323,969	-		GFF3270	0.32	-1.1
3,323,995	+		GFF3270	0.34	-1.2
3,323,995	+		GFF3270	0.34	-0.9
3,323,995	+		GFF3270	0.34	-1.0
3,324,003	-		GFF3270	0.35	-1.8
3,324,003	-		GFF3270	0.35	+1.5
3,324,005	+		GFF3270	0.36	-1.4
3,324,005	+		GFF3270	0.36	+0.3
3,324,005	+		GFF3270	0.36	-1.3
3,324,005	+		GFF3270	0.36	-0.9
3,324,011	-		GFF3270	0.36	-0.8
3,324,012	+		GFF3270	0.36	-1.0
3,324,013	-		GFF3270	0.36	-2.2
3,324,013	-		GFF3270	0.36	+0.1
3,324,013	-		GFF3270	0.36	+0.3
3,324,020	-		GFF3270	0.37	-0.6
3,324,027	-		GFF3270	0.38	+0.3
3,324,051	+		GFF3270	0.40	+0.1
3,324,078	+		GFF3270	0.43	+0.5
3,324,078	+		GFF3270	0.43	-0.9
3,324,078	+		GFF3270	0.43	-2.4
3,324,086	-		GFF3270	0.44	-2.3
3,324,086	-		GFF3270	0.44	-0.5
3,324,091	-		GFF3270	0.44	-0.5
3,324,108	+		GFF3270	0.46	-1.5
3,324,128	+		GFF3270	0.48	-1.6
3,324,143	+		GFF3270	0.50	+0.8
3,324,151	-		GFF3270	0.51	-1.9
3,324,182	-		GFF3270	0.54	-0.3
3,324,196	-		GFF3270	0.55	-1.9
3,324,259	+		GFF3270	0.62	-0.8
3,324,269	-		GFF3270	0.63	-0.2
3,324,279	-		GFF3270	0.64	+1.3
3,324,281	+		GFF3270	0.64	-1.3
3,324,284	-		GFF3270	0.64	-0.5
3,324,284	-		GFF3270	0.64	-2.7
3,324,284	-		GFF3270	0.64	-0.5
3,324,286	+		GFF3270	0.64	+1.6
3,324,294	-		GFF3270	0.65	-1.0
3,324,294	-		GFF3270	0.65	-0.3
3,324,296	-		GFF3270	0.66	+0.3
3,324,306	-		GFF3270	0.67	+0.4
3,324,319	+		GFF3270	0.68	-2.6
3,324,327	-		GFF3270	0.69	+0.4
3,324,327	-		GFF3270	0.69	+0.1
3,324,329	+		GFF3270	0.69	-0.3
3,324,330	+		GFF3270	0.69	-1.4
3,324,354	-		GFF3270	0.72	-0.2
3,324,354	-		GFF3270	0.72	-1.3
3,324,365	+		GFF3270	0.73	-0.2
3,324,385	-		GFF3270	0.75	-0.6
3,324,398	+		GFF3270	0.76	-1.8
3,324,398	+		GFF3270	0.76	-0.5
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	-2.2
3,324,398	+		GFF3270	0.76	+0.8
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	+0.1
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	-0.4
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	+0.8
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	-0.2
3,324,398	+		GFF3270	0.76	-1.6
3,324,398	+		GFF3270	0.76	-2.9
3,324,398	+		GFF3270	0.76	-0.1
3,324,398	+		GFF3270	0.76	-2.5
3,324,398	+		GFF3270	0.76	-0.0
3,324,398	+		GFF3270	0.76	-1.1
3,324,398	+		GFF3270	0.76	-2.0
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	-0.0
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	-0.5
3,324,398	+		GFF3270	0.76	+0.8
3,324,398	+		GFF3270	0.76	-0.8
3,324,398	+		GFF3270	0.76	-0.0
3,324,398	+		GFF3270	0.76	+1.2
3,324,398	+		GFF3270	0.76	+0.2
3,324,398	+		GFF3270	0.76	-1.7
3,324,398	+		GFF3270	0.76	+0.3
3,324,398	+		GFF3270	0.76	-0.2
3,324,398	+		GFF3270	0.76	-1.9
3,324,398	+		GFF3270	0.76	-0.5
3,324,398	+		GFF3270	0.76	+0.2
3,324,398	+		GFF3270	0.76	-1.0
3,324,398	+		GFF3270	0.76	+0.2
3,324,398	+		GFF3270	0.76	+0.3
3,324,398	+		GFF3270	0.76	-2.0
3,324,401	-		GFF3270	0.76	-0.5
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-1.8
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	+0.3
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	-2.2
3,324,406	-		GFF3270	0.77	-0.0
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	+0.3
3,324,406	-		GFF3270	0.77	-1.7
3,324,406	-		GFF3270	0.77	+1.8
3,324,406	-		GFF3270	0.77	-1.6
3,324,406	-		GFF3270	0.77	-1.0
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	-0.0
3,324,406	-		GFF3270	0.77	-0.5
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	+0.6
3,324,406	-		GFF3270	0.77	-0.1
3,324,406	-		GFF3270	0.77	-0.7
3,324,406	-		GFF3270	0.77	+0.9
3,324,406	-		GFF3270	0.77	-1.5
3,324,406	-		GFF3270	0.77	+0.3
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	+0.5
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	-0.1
3,324,406	-		GFF3270	0.77	-2.1
3,324,406	-		GFF3270	0.77	+0.0
3,324,406	-		GFF3270	0.77	-1.6
3,324,406	-		GFF3270	0.77	+1.4
3,324,406	-		GFF3270	0.77	+0.6
3,324,406	-		GFF3270	0.77	-1.1
3,324,406	-		GFF3270	0.77	+0.4
3,324,412	+		GFF3270	0.78	+0.0
3,324,414	+		GFF3270	0.78	+0.6
3,324,422	-		GFF3270	0.79	+0.1
3,324,422	-		GFF3270	0.79	-2.0
3,324,431	+		GFF3270	0.79	+0.4
3,324,431	+		GFF3270	0.79	+0.4
3,324,431	+		GFF3270	0.79	-1.6
3,324,431	+		GFF3270	0.79	+1.4
3,324,439	-		GFF3270	0.80	-1.0
3,324,479	-		GFF3270	0.84	+0.5
3,324,481	-		GFF3270	0.85	-1.1
3,324,481	-		GFF3270	0.85	+0.6
3,324,488	+		GFF3270	0.85	-1.6
3,324,488	+		GFF3270	0.85	-2.2
3,324,488	+		GFF3270	0.85	+1.0
3,324,488	+		GFF3270	0.85	-0.4
3,324,488	+		GFF3270	0.85	-1.2
3,324,488	+		GFF3270	0.85	-0.7
3,324,488	+		GFF3270	0.85	-2.8
3,324,488	+		GFF3270	0.85	+0.4
3,324,488	+		GFF3270	0.85	+0.4
3,324,490	+		GFF3270	0.86	+0.8
3,324,496	-		GFF3270	0.86	+1.1
3,324,496	-		GFF3270	0.86	+1.7
3,324,496	-		GFF3270	0.86	+1.8
3,324,496	-		GFF3270	0.86	+1.0
3,324,496	-		GFF3270	0.86	+0.1
3,324,496	-		GFF3270	0.86	-0.4
3,324,496	-		GFF3270	0.86	-0.4
3,324,498	-		GFF3270	0.86	-1.5
3,324,498	-		GFF3270	0.86	-0.6
3,324,521	+		GFF3270	0.89	+0.6
3,324,545	-				+1.4
3,324,555	+				-0.5
3,324,558	-				-0.6
3,324,560	+				-1.4
3,324,560	+				-1.1
3,324,560	+				+0.4
3,324,560	+				-1.7
3,324,568	-				-0.1
3,324,568	-				-2.0
3,324,568	-				-1.4
3,324,568	-				+1.1