Strain Fitness in Sphingobium sp. HT1-2 around GFF3267

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,320,799	+		GFF3265	0.31	+0.7
3,320,802	-		GFF3265	0.31	-0.1
3,320,807	-		GFF3265	0.32	-2.2
3,320,827	-		GFF3265	0.34	+0.6
3,320,851	-		GFF3265	0.37	-1.8
3,320,853	-		GFF3265	0.37	-1.0
3,320,853	-		GFF3265	0.37	-0.1
3,320,853	-		GFF3265	0.37	-1.2
3,320,853	-		GFF3265	0.37	-2.0
3,320,879	+		GFF3265	0.40	-1.6
3,320,880	+		GFF3265	0.40	-1.4
3,320,880	+		GFF3265	0.40	-0.6
3,320,887	-		GFF3265	0.40	-0.2
3,320,905	-		GFF3265	0.42	-0.0
3,320,913	-		GFF3265	0.43	-2.3
3,320,923	+		GFF3265	0.44	-0.2
3,320,929	-		GFF3265	0.45	+0.2
3,320,931	-		GFF3265	0.45	+0.1
3,320,947	-		GFF3265	0.47	-2.1
3,320,957	+		GFF3265	0.48	-0.7
3,320,992	+		GFF3265	0.51	-1.2
3,320,997	+		GFF3265	0.52	-0.3
3,320,999	+		GFF3265	0.52	-1.3
3,321,005	-		GFF3265	0.53	-1.4
3,321,005	-		GFF3265	0.53	+0.3
3,321,007	-		GFF3265	0.53	-1.3
3,321,009	+		GFF3265	0.53	+0.3
3,321,009	+		GFF3265	0.53	+0.1
3,321,054	+		GFF3265	0.58	+0.8
3,321,180	+		GFF3265	0.71	-0.6
3,321,186	+		GFF3265	0.72	+0.1
3,321,188	-		GFF3265	0.72	-1.2
3,321,207	+		GFF3265	0.74	-2.2
3,321,231	-		GFF3265	0.76	+0.2
3,321,264	+		GFF3265	0.80	+1.4
3,321,274	-		GFF3265	0.81	-1.2
3,321,274	-		GFF3265	0.81	+1.8
3,321,275	-		GFF3265	0.81	-0.8
3,321,291	-		GFF3265	0.83	+0.6
3,321,291	-		GFF3265	0.83	-0.5
3,321,325	+		GFF3265	0.86	-0.5
3,321,345	+		GFF3265	0.88	+1.6
3,321,345	+		GFF3265	0.88	-0.1
3,321,353	-		GFF3265	0.89	-1.5
3,321,353	-		GFF3265	0.89	+0.8
3,321,353	-		GFF3265	0.89	-1.0
3,321,353	-		GFF3265	0.89	+0.3
3,321,358	+		GFF3265	0.90	-0.3
3,321,389	+				-0.5
3,321,397	+				-1.0
3,321,452	-				+0.8
3,321,552	+				-0.2
3,321,556	+				+0.4
3,321,556	+				+0.1
3,321,566	+				-0.8
3,321,570	-				-2.5
3,321,575	+				+0.9
3,321,578	-				-0.4
3,321,578	-				-0.4
3,321,636	+		GFF3266	0.34	-1.7
3,321,643	-		GFF3266	0.39	-1.4
3,321,644	-		GFF3266	0.39	+0.0
3,321,694	+		GFF3266	0.68	-0.2
3,321,694	+		GFF3266	0.68	-0.2
3,321,694	+		GFF3266	0.68	+1.3
3,321,694	+		GFF3266	0.68	-0.9
3,321,694	+		GFF3266	0.68	+0.3
3,321,694	+		GFF3266	0.68	-1.2
3,321,702	-		GFF3266	0.72	-0.2
3,321,702	-		GFF3266	0.72	+0.7
3,321,702	-		GFF3266	0.72	+0.6
3,321,702	-		GFF3266	0.72	-0.9
3,321,702	-		GFF3266	0.72	-0.7
3,321,735	-				-2.1
3,321,738	+				-0.9
3,321,738	+				+0.3
3,321,738	+				-2.0
3,321,739	-				-0.0
3,321,743	+				+0.4
3,321,743	+				-2.2
3,321,743	+				+1.3
3,321,743	+				-1.2
3,321,746	-				-1.6
3,321,751	+				+0.7
3,321,751	+				-1.0
3,321,751	+				+0.5
3,321,752	-				-0.1
3,321,762	-				+0.1
3,321,776	+				-0.2
3,321,784	-				-0.7
3,321,784	-				-0.5
3,321,794	+				+0.2
3,321,794	+				+0.7
3,322,668	+				-1.7
3,322,674	-				+0.3
3,322,676	-				+0.4
3,322,676	-				-1.1
3,322,676	-				-0.1
3,322,691	+				-1.0
3,322,691	+				+0.5
3,322,691	+				-0.2
3,322,699	-				-0.8
3,322,699	-				+0.6
3,322,699	-				-0.5
3,322,699	-				-0.3
3,322,708	-				-0.8
3,322,709	-				-1.5
3,322,731	+				-1.6
3,322,746	+				-0.7
3,322,782	+				-2.7
3,322,790	-				-0.6
3,322,827	+		GFF3268	0.14	+0.1
3,322,827	+		GFF3268	0.14	+1.2
3,322,827	+		GFF3268	0.14	-0.0
3,322,827	+		GFF3268	0.14	+0.4
3,322,827	+		GFF3268	0.14	-1.4
3,322,835	-		GFF3268	0.15	+0.2
3,322,870	+		GFF3268	0.23	-0.8
3,322,870	+		GFF3268	0.23	+0.1
3,322,871	-		GFF3268	0.23	+0.8
3,322,878	-		GFF3268	0.25	+1.4
3,322,880	-		GFF3268	0.25	-0.8
3,322,887	+		GFF3268	0.27	+1.5
3,322,887	+		GFF3268	0.27	-1.8
3,322,887	+		GFF3268	0.27	-0.1
3,322,911	-		GFF3268	0.32	-0.1
3,322,940	+		GFF3268	0.38	+0.6
3,322,948	-		GFF3268	0.39	+0.4
3,322,948	-		GFF3268	0.39	+1.0
3,322,955	+		GFF3268	0.41	-1.3
3,322,965	+		GFF3268	0.43	-0.3
3,322,973	+		GFF3268	0.45	+0.3
3,322,973	-		GFF3268	0.45	-1.1
3,322,981	-		GFF3268	0.46	+0.9
3,322,990	+		GFF3268	0.48	+0.5
3,323,003	-		GFF3268	0.51	-0.0
3,323,008	-		GFF3268	0.52	+1.2
3,323,026	+		GFF3268	0.56	-0.9
3,323,026	+		GFF3268	0.56	-1.2
3,323,027	+		GFF3268	0.56	-2.6
3,323,035	-		GFF3268	0.58	+0.9
3,323,049	+		GFF3268	0.61	+0.4
3,323,049	+		GFF3268	0.61	-1.1
3,323,049	+		GFF3268	0.61	-2.4
3,323,049	+		GFF3268	0.61	+0.3
3,323,049	+		GFF3268	0.61	-0.1
3,323,049	+		GFF3268	0.61	-1.7
3,323,057	-		GFF3268	0.63	+0.5
3,323,057	-		GFF3268	0.63	-0.3
3,323,057	-		GFF3268	0.63	+0.1
3,323,057	-		GFF3268	0.63	-0.2
3,323,064	+		GFF3268	0.64	+0.4
3,323,068	+		GFF3268	0.65	-0.1
3,323,100	+		GFF3268	0.72	+0.9
3,323,100	+		GFF3268	0.72	+1.1
3,323,108	-		GFF3268	0.73	-2.0
3,323,108	-		GFF3268	0.73	+0.0
3,323,123	+		GFF3268	0.77	-0.0
3,323,129	+		GFF3268	0.78	+0.1
3,323,129	+		GFF3268	0.78	-0.6
3,323,155	+		GFF3268	0.83	-1.7
3,323,202	+				-0.8
3,323,223	-				-0.3
3,323,243	+				+1.3
3,323,243	+				-0.5
3,323,245	+				-0.5
3,323,253	+				-0.1
3,323,253	+				+0.7
3,323,263	+				-0.0
3,323,263	+				-0.5
3,323,263	+				+0.2
3,323,268	+				-0.8
3,323,271	-				-0.1
3,323,271	-				+1.3
3,323,282	+				+0.2
3,323,282	+				-0.1
3,323,282	+				-1.3
3,323,282	+				-1.9
3,323,282	+				-1.2
3,323,282	+				+0.8
3,323,282	+				-0.4
3,323,285	-				-0.4
3,323,287	+				-0.7
3,323,290	-				-1.3
3,323,294	+				+1.5
3,323,295	-				-1.7
3,323,295	-				-0.3
3,323,295	-				-0.6
3,323,295	-				-0.3
3,323,295	-				-0.2
3,323,295	-				-1.1
3,323,318	+				-0.9
3,323,328	+				-1.4
3,323,362	-				-1.0
3,323,383	+				-0.6
3,323,388	+				+0.5
3,323,406	-				+0.2
3,323,418	+		GFF3269	0.10	-1.1
3,323,418	+		GFF3269	0.10	-0.7
3,323,423	+		GFF3269	0.13	-0.2
3,323,426	-		GFF3269	0.15	-0.6
3,323,431	-		GFF3269	0.18	+0.0
3,323,449	+		GFF3269	0.28	+0.8
3,323,471	-		GFF3269	0.41	+0.5
3,323,489	+		GFF3269	0.51	+0.3
3,323,489	+		GFF3269	0.51	+0.9
3,323,489	+		GFF3269	0.51	+0.4
3,323,493	+		GFF3269	0.53	-0.5
3,323,494	+		GFF3269	0.54	-1.2
3,323,494	+		GFF3269	0.54	+0.9
3,323,497	-		GFF3269	0.56	-1.7
3,323,506	+		GFF3269	0.61	+0.6
3,323,512	+		GFF3269	0.64	-1.0
3,323,522	-		GFF3269	0.70	-0.8
3,323,522	-		GFF3269	0.70	+0.5
3,323,557	+				-0.3
3,323,561	-				+0.5
3,323,609	+				-1.6
3,323,615	-				+0.3
3,323,627	-				-0.7
3,323,633	+				-1.1
3,323,645	+				+1.4
3,323,645	+				+0.7
3,323,655	+				-0.0
3,323,655	+				+0.7
3,323,663	-				-1.3
3,323,668	-				-1.3