Strain Fitness in Sphingobium sp. HT1-2 around GFF3264

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,318,883	-		GFF3263	0.53	-1.2
3,318,895	+		GFF3263	0.54	+0.6
3,318,901	-		GFF3263	0.54	+0.1
3,318,902	+		GFF3263	0.54	-0.2
3,318,903	-		GFF3263	0.54	-1.0
3,318,903	-		GFF3263	0.54	-1.6
3,318,903	-		GFF3263	0.54	-1.6
3,318,917	+		GFF3263	0.55	-0.6
3,318,917	+		GFF3263	0.55	-0.2
3,318,925	-		GFF3263	0.55	+0.2
3,318,925	-		GFF3263	0.55	-0.0
3,318,925	-		GFF3263	0.55	-1.7
3,318,927	-		GFF3263	0.55	+0.7
3,318,953	+		GFF3263	0.57	+0.7
3,318,956	-		GFF3263	0.57	-0.8
3,318,961	-		GFF3263	0.57	-0.2
3,318,961	-		GFF3263	0.57	-0.3
3,318,974	+		GFF3263	0.58	-0.7
3,318,989	+		GFF3263	0.59	-1.2
3,318,997	-		GFF3263	0.59	-0.6
3,318,999	+		GFF3263	0.59	-0.6
3,318,999	+		GFF3263	0.59	-0.7
3,319,007	-		GFF3263	0.60	-0.3
3,319,007	-		GFF3263	0.60	-0.4
3,319,022	+		GFF3263	0.60	-2.7
3,319,022	+		GFF3263	0.60	-1.3
3,319,027	+		GFF3263	0.61	-1.3
3,319,036	-		GFF3263	0.61	-0.0
3,319,056	+		GFF3263	0.62	+0.0
3,319,056	+		GFF3263	0.62	+0.1
3,319,056	+		GFF3263	0.62	+0.4
3,319,056	+		GFF3263	0.62	-0.5
3,319,056	+		GFF3263	0.62	+0.2
3,319,056	+		GFF3263	0.62	+0.1
3,319,064	-		GFF3263	0.63	-0.8
3,319,064	-		GFF3263	0.63	-2.7
3,319,064	-		GFF3263	0.63	-0.0
3,319,064	-		GFF3263	0.63	-0.1
3,319,083	+		GFF3263	0.64	-1.4
3,319,083	+		GFF3263	0.64	-1.7
3,319,083	+		GFF3263	0.64	-0.2
3,319,083	+		GFF3263	0.64	+0.8
3,319,083	+		GFF3263	0.64	-0.5
3,319,083	+		GFF3263	0.64	-0.6
3,319,083	+		GFF3263	0.64	+0.7
3,319,088	+		GFF3263	0.64	-0.2
3,319,091	-		GFF3263	0.64	+0.5
3,319,093	+		GFF3263	0.64	+0.4
3,319,093	+		GFF3263	0.64	+0.8
3,319,099	+		GFF3263	0.65	+0.3
3,319,099	+		GFF3263	0.65	+0.8
3,319,099	+		GFF3263	0.65	-0.4
3,319,099	+		GFF3263	0.65	-0.4
3,319,107	-		GFF3263	0.65	-2.2
3,319,160	+		GFF3263	0.68	-2.1
3,319,166	+		GFF3263	0.68	-0.1
3,319,222	+		GFF3263	0.71	-1.2
3,319,226	+		GFF3263	0.71	-0.4
3,319,226	+		GFF3263	0.71	-2.0
3,319,236	+		GFF3263	0.72	+0.8
3,319,236	+		GFF3263	0.72	+0.2
3,319,236	+		GFF3263	0.72	-1.9
3,319,244	-		GFF3263	0.72	-0.1
3,319,244	-		GFF3263	0.72	-0.4
3,319,244	-		GFF3263	0.72	-0.3
3,319,244	-		GFF3263	0.72	-0.5
3,319,259	-		GFF3263	0.73	-1.6
3,319,270	+		GFF3263	0.74	-1.4
3,319,286	-		GFF3263	0.75	+1.4
3,319,286	-		GFF3263	0.75	+0.3
3,319,301	-		GFF3263	0.75	-0.1
3,319,304	-		GFF3263	0.76	+0.9
3,319,321	+		GFF3263	0.77	-2.3
3,319,323	-		GFF3263	0.77	+1.1
3,319,339	-		GFF3263	0.77	-0.1
3,319,341	+		GFF3263	0.78	-0.5
3,319,341	+		GFF3263	0.78	+0.3
3,319,341	+		GFF3263	0.78	-0.3
3,319,351	+		GFF3263	0.78	+0.2
3,319,386	+		GFF3263	0.80	-0.5
3,319,394	-		GFF3263	0.80	+0.0
3,319,439	+		GFF3263	0.83	-2.2
3,319,455	-		GFF3263	0.84	-1.2
3,319,457	-		GFF3263	0.84	+0.5
3,319,478	+		GFF3263	0.85	+0.7
3,319,496	-		GFF3263	0.86	-0.8
3,319,532	-		GFF3263	0.88	+0.2
3,319,550	-		GFF3263	0.89	-0.7
3,319,585	-				-2.2
3,319,585	-				-1.4
3,319,591	+				-0.5
3,319,594	-				+1.3
3,319,599	-				-2.1
3,319,656	+				+0.2
3,319,672	+				-0.3
3,319,680	-				-1.9
3,319,689	+				-1.5
3,319,690	+				-1.2
3,319,699	+				-0.9
3,319,699	+				-1.5
3,319,699	+				+0.4
3,319,699	+				+0.1
3,319,699	+				-0.1
3,319,699	+				+0.3
3,319,702	-				+0.1
3,319,704	+				-0.7
3,319,707	-				-0.3
3,319,707	-				-0.7
3,319,707	-				-0.0
3,319,731	-				+0.1
3,319,745	+				-1.3
3,319,795	-				-0.6
3,319,812	+				-1.7
3,319,812	+				-0.7
3,320,466	+				-0.3
3,320,471	+				+0.2
3,320,471	+				-0.6
3,320,474	-				-1.2
3,320,486	-				+0.3
3,320,489	+				-0.4
3,320,497	-				-0.3
3,320,497	-				-2.0
3,320,502	-				-1.0
3,320,559	-				-0.5
3,320,566	-				+0.4
3,320,574	-				-1.7
3,320,574	-				-0.6
3,320,576	+				-1.7
3,320,584	-				+0.1
3,320,585	-				-0.3
3,320,638	+		GFF3265	0.14	-2.1
3,320,646	-		GFF3265	0.15	-0.2
3,320,665	-		GFF3265	0.17	-0.8
3,320,670	+		GFF3265	0.18	+0.3
3,320,695	-		GFF3265	0.20	-1.3
3,320,710	+		GFF3265	0.22	+0.3
3,320,713	-		GFF3265	0.22	+0.3
3,320,722	+		GFF3265	0.23	-0.7
3,320,733	+		GFF3265	0.24	-0.4
3,320,733	+		GFF3265	0.24	+0.4
3,320,733	+		GFF3265	0.24	-1.0
3,320,736	-		GFF3265	0.25	-2.4
3,320,736	-		GFF3265	0.25	-0.5
3,320,738	+		GFF3265	0.25	+1.1
3,320,741	-		GFF3265	0.25	+0.6
3,320,741	-		GFF3265	0.25	-1.1
3,320,741	-		GFF3265	0.25	-0.1
3,320,749	+		GFF3265	0.26	+0.2
3,320,751	-		GFF3265	0.26	-0.2
3,320,775	-		GFF3265	0.29	+0.3
3,320,799	+		GFF3265	0.31	+0.7
3,320,802	-		GFF3265	0.31	-0.1
3,320,807	-		GFF3265	0.32	-2.2
3,320,827	-		GFF3265	0.34	+0.6
3,320,851	-		GFF3265	0.37	-1.8
3,320,853	-		GFF3265	0.37	-1.0
3,320,853	-		GFF3265	0.37	-0.1
3,320,853	-		GFF3265	0.37	-1.2
3,320,853	-		GFF3265	0.37	-2.0
3,320,879	+		GFF3265	0.40	-1.6
3,320,880	+		GFF3265	0.40	-1.4
3,320,880	+		GFF3265	0.40	-0.6
3,320,887	-		GFF3265	0.40	-0.2
3,320,905	-		GFF3265	0.42	-0.0
3,320,913	-		GFF3265	0.43	-2.3
3,320,923	+		GFF3265	0.44	-0.2
3,320,929	-		GFF3265	0.45	+0.2
3,320,931	-		GFF3265	0.45	+0.1
3,320,947	-		GFF3265	0.47	-2.1
3,320,957	+		GFF3265	0.48	-0.7
3,320,992	+		GFF3265	0.51	-1.2
3,320,997	+		GFF3265	0.52	-0.3
3,320,999	+		GFF3265	0.52	-1.3
3,321,005	-		GFF3265	0.53	-1.4
3,321,005	-		GFF3265	0.53	+0.3
3,321,007	-		GFF3265	0.53	-1.3
3,321,009	+		GFF3265	0.53	+0.3
3,321,009	+		GFF3265	0.53	+0.1
3,321,054	+		GFF3265	0.58	+0.8
3,321,180	+		GFF3265	0.71	-0.6
3,321,186	+		GFF3265	0.72	+0.1
3,321,188	-		GFF3265	0.72	-1.2
3,321,207	+		GFF3265	0.74	-2.2
3,321,231	-		GFF3265	0.76	+0.2
3,321,264	+		GFF3265	0.80	+1.4
3,321,274	-		GFF3265	0.81	-1.2
3,321,274	-		GFF3265	0.81	+1.8
3,321,275	-		GFF3265	0.81	-0.8
3,321,291	-		GFF3265	0.83	+0.6
3,321,291	-		GFF3265	0.83	-0.5
3,321,325	+		GFF3265	0.86	-0.5
3,321,345	+		GFF3265	0.88	+1.6
3,321,345	+		GFF3265	0.88	-0.1
3,321,353	-		GFF3265	0.89	-1.5
3,321,353	-		GFF3265	0.89	+0.8
3,321,353	-		GFF3265	0.89	-1.0
3,321,353	-		GFF3265	0.89	+0.3
3,321,358	+		GFF3265	0.90	-0.3
3,321,389	+				-0.5
3,321,397	+				-1.0
3,321,452	-				+0.8