Strain Fitness in Sphingobium sp. HT1-2 around GFF3256

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3255 and GFF3256 are separated by 36 nucleotidesGFF3256 and GFF3257 are separated by 73 nucleotides GFF3255 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 3,311,359 to 3,312,345 GFF3255 GFF3256 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 3,312,382 to 3,312,990 GFF3256 GFF3257 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 3,313,064 to 3,314,344 GFF3257 Position (kb) 3312 3313Strain fitness (log2 ratio) -2 -1 0 1at 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.340 kb on + strandat 3312.370 kb on + strandat 3313.040 kb on + strandat 3313.048 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
3,312,340 + +1.2
3,312,340 + -0.1
3,312,340 + -2.0
3,312,340 + -1.4
3,312,340 + -1.4
3,312,340 + -1.0
3,312,340 + -0.6
3,312,340 + +0.1
3,312,370 + -0.6
3,313,040 + +0.7
3,313,048 + +0.8

Or see this region's nucleotide sequence