Strain Fitness in Sphingobium sp. HT1-2 around GFF3247

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,301,662	+				-0.4
3,301,662	+				+0.9
3,301,662	+				+1.3
3,301,670	-				+0.2
3,301,670	-				-0.9
3,301,670	-				-0.1
3,301,673	+				+0.1
3,301,673	+				-1.2
3,301,673	+				-0.1
3,301,680	-				+0.7
3,301,681	-				-1.5
3,301,681	-				+1.9
3,301,681	-				+0.3
3,301,719	+				+1.0
3,301,719	+				-1.3
3,301,719	+				-0.4
3,301,727	-				-1.2
3,301,727	-				-0.5
3,301,727	-				-0.6
3,301,727	-				-1.8
3,301,743	+				-0.6
3,301,743	+				-1.8
3,301,743	+				-0.6
3,301,743	+				-1.3
3,301,751	-				-0.5
3,301,751	-				-1.9
3,301,751	-				-1.9
3,301,751	-				-1.6
3,301,756	-				-0.2
3,301,768	-				-0.7
3,301,793	-		GFF3245	0.12	+0.4
3,301,814	+		GFF3245	0.19	-0.9
3,301,831	+		GFF3245	0.25	-0.2
3,301,831	+		GFF3245	0.25	-1.3
3,301,831	+		GFF3245	0.25	-1.1
3,301,832	+		GFF3245	0.25	-1.2
3,301,836	+		GFF3245	0.27	+0.9
3,301,836	+		GFF3245	0.27	-0.1
3,301,839	-		GFF3245	0.28	-2.3
3,301,839	-		GFF3245	0.28	+1.6
3,301,839	-		GFF3245	0.28	+1.0
3,301,886	+		GFF3245	0.43	-0.9
3,301,888	-		GFF3245	0.44	-0.4
3,301,894	-		GFF3245	0.46	-0.6
3,301,894	-		GFF3245	0.46	-1.4
3,301,913	+		GFF3245	0.53	-1.5
3,301,914	+		GFF3245	0.53	-0.1
3,301,918	+		GFF3245	0.54	-1.9
3,301,918	+		GFF3245	0.54	-1.1
3,301,918	+		GFF3245	0.54	-0.4
3,301,923	+		GFF3245	0.56	-0.4
3,301,923	+		GFF3245	0.56	-1.1
3,301,923	+		GFF3245	0.56	+0.5
3,301,926	-		GFF3245	0.57	-0.2
3,301,926	-		GFF3245	0.57	-1.0
3,301,931	-		GFF3245	0.59	-0.9
3,301,931	-		GFF3245	0.59	-0.5
3,301,943	-		GFF3245	0.63	+0.2
3,301,943	-		GFF3245	0.63	-1.9
3,301,981	+		GFF3245	0.75	-0.4
3,301,981	+		GFF3245	0.75	-0.8
3,301,981	+		GFF3245	0.75	+0.4
3,301,989	-		GFF3245	0.78	+0.2
3,301,989	-		GFF3245	0.78	+0.2
3,301,989	-		GFF3245	0.78	-0.2
3,301,989	-		GFF3245	0.78	-0.3
3,301,990	+		GFF3245	0.78	-0.6
3,302,007	+		GFF3245	0.84	-1.0
3,302,007	+		GFF3245	0.84	-0.5
3,302,007	+		GFF3245	0.84	-1.1
3,302,007	+		GFF3245	0.84	-0.8
3,302,007	+		GFF3245	0.84	+0.9
3,302,007	+		GFF3245	0.84	+0.2
3,302,007	+		GFF3245	0.84	-0.2
3,302,007	+		GFF3245	0.84	+0.7
3,302,007	+		GFF3245	0.84	-3.6
3,302,015	-		GFF3245	0.87	-0.9
3,302,015	-		GFF3245	0.87	-0.9
3,302,031	+				-1.3
3,302,031	+				+0.7
3,302,039	-				-0.0
3,302,039	-				+0.6
3,302,039	-				-2.6
3,302,039	-				+0.5
3,302,042	+				-0.5
3,302,056	-				-0.2
3,302,060	-				+1.5
3,302,062	+				-0.1
3,302,062	+				+0.4
3,302,062	+				-0.1
3,302,062	+				-0.0
3,302,064	+				-1.6
3,302,070	-				-0.3
3,302,070	-				-0.2
3,302,088	+				-0.2
3,302,088	+				-1.2
3,302,088	+				-0.2
3,302,088	+				+0.7
3,302,096	-				-0.4
3,302,123	+				-0.7
3,302,134	+				+0.9
3,302,142	-				+0.9
3,302,147	+				-0.1
3,302,153	+				-1.4
3,302,153	+				+0.9
3,302,159	+				-0.4
3,302,161	-				-0.7
3,302,482	-				+0.3
3,302,486	+				-0.5
3,302,487	+				+0.0
3,302,489	-				+0.9
3,302,495	-				-1.0
3,302,495	-				-0.8
3,302,496	+				+0.9
3,302,496	+				-0.4
3,302,496	+				+0.5
3,302,496	+				-0.3
3,302,496	+				-0.5
3,302,504	-				-0.8
3,302,504	-				-0.8
3,302,504	-				-0.0
3,302,510	+				-0.4
3,302,512	+				-1.4
3,302,518	-				+0.6
3,302,531	+				+0.4
3,302,536	+				-0.4
3,302,536	+				-0.5
3,302,544	-				-1.0
3,302,544	-				-0.6
3,302,597	+				-1.7
3,302,597	+				-0.1
3,302,602	+				-0.1
3,302,602	+				+0.6
3,302,605	-				-1.9
3,302,607	+				+0.4
3,302,610	-				+1.3
3,302,610	-				+0.1
3,302,641	+				-1.5
3,302,649	+				-1.8
3,302,649	-				-0.2
3,302,649	-				-1.9
3,302,657	-				-1.9
3,302,657	-				+0.9
3,302,666	+				+1.6
3,302,672	+				+0.4
3,302,680	-				+0.1
3,302,724	-		GFF3247	0.26	-1.1
3,302,726	-		GFF3247	0.27	+0.1
3,302,738	+		GFF3247	0.32	-2.3
3,302,766	+		GFF3247	0.43	-1.3
3,302,767	+		GFF3247	0.43	-2.0
3,302,774	+		GFF3247	0.46	-0.6
3,302,775	-		GFF3247	0.46	+0.7
3,302,793	+		GFF3247	0.53	+0.1
3,302,830	+		GFF3247	0.67	+0.4
3,302,838	-		GFF3247	0.71	+0.1
3,302,838	-		GFF3247	0.71	-0.0
3,302,838	-		GFF3247	0.71	-0.8
3,302,885	+		GFF3247	0.89	-0.7
3,302,885	+		GFF3247	0.89	-2.2
3,302,893	-				-1.8
3,302,893	-				-0.3
3,302,893	-				-1.6
3,302,893	-				+0.8
3,302,900	+				-1.2
3,302,903	-				-1.0
3,302,936	-				+0.2
3,302,944	-				-2.1
3,302,953	-				-1.8
3,302,953	-				+0.5
3,302,984	-				-1.1
3,302,985	-				+0.3
3,302,987	-				+0.0
3,302,995	+				+1.4
3,302,995	+				-2.0
3,303,002	+		GFF3248	0.11	+0.8
3,303,027	+		GFF3248	0.21	+0.8
3,303,068	-		GFF3248	0.38	+0.7
3,303,071	+		GFF3248	0.39	+0.5
3,303,071	+		GFF3248	0.39	-0.3
3,303,071	+		GFF3248	0.39	-1.4
3,303,071	+		GFF3248	0.39	-0.8
3,303,071	+		GFF3248	0.39	-0.3
3,303,071	+		GFF3248	0.39	-0.6
3,303,071	+		GFF3248	0.39	+0.4
3,303,072	-		GFF3248	0.39	+0.6
3,303,076	+		GFF3248	0.41	-0.1
3,303,079	-		GFF3248	0.42	+1.0
3,303,079	-		GFF3248	0.42	-0.5
3,303,079	-		GFF3248	0.42	+0.9
3,303,079	-		GFF3248	0.42	+0.7
3,303,089	-		GFF3248	0.46	-1.8
3,303,097	+		GFF3248	0.49	+0.2
3,303,104	+		GFF3248	0.52	+0.4
3,303,104	+		GFF3248	0.52	+0.3
3,303,104	+		GFF3248	0.52	+0.7
3,303,104	+		GFF3248	0.52	-1.7
3,303,111	-		GFF3248	0.55	-1.3
3,303,134	+		GFF3248	0.64	-0.3
3,303,141	+		GFF3248	0.67	+0.7
3,303,166	-		GFF3248	0.77	-0.6
3,303,182	+		GFF3248	0.84	+0.4
3,303,195	-		GFF3248	0.89	-1.1
3,303,200	-				+0.5
3,303,205	-				-0.2
3,303,216	+				-2.5
3,303,224	-				-0.5
3,303,232	-				-1.9
3,303,241	-				+0.6
3,303,273	+				-1.2
3,303,278	+				+1.0
3,303,286	-				-0.1
3,303,296	-				+0.5
3,303,306	+				-1.2
3,303,314	+				-0.4
3,303,316	-				-1.4
3,303,322	-				+0.3
3,303,328	+				-0.2
3,303,333	+				-1.4
3,303,341	-				+1.6
3,303,341	-				-0.6
3,303,341	-				+0.7
3,303,382	-				-1.1
3,303,451	-				+0.0
3,303,451	-				-1.6
3,303,451	-				+0.8
3,303,479	+				-0.1
3,303,479	+				+0.4
3,303,494	+				-0.3
3,303,512	-				-0.9
3,303,571	+				-0.3
3,303,571	+				-1.2
3,303,600	-		GFF3249	0.12	+0.0
3,303,600	-		GFF3249	0.12	-1.4
3,303,600	-		GFF3249	0.12	-0.1
3,303,600	-		GFF3249	0.12	-1.9
3,303,600	-		GFF3249	0.12	-0.2
3,303,615	-		GFF3249	0.14	-0.0
3,303,615	-		GFF3249	0.14	+0.6
3,303,617	+		GFF3249	0.14	-0.2
3,303,617	+		GFF3249	0.14	-0.1
3,303,625	-		GFF3249	0.14	-0.2
3,303,625	-		GFF3249	0.14	+0.1
3,303,653	+		GFF3249	0.17	-0.0
3,303,653	+		GFF3249	0.17	-0.7
3,303,660	+		GFF3249	0.17	+0.7
3,303,661	-		GFF3249	0.18	-0.3
3,303,668	-		GFF3249	0.18	-0.6
3,303,668	-		GFF3249	0.18	-2.3
3,303,668	-		GFF3249	0.18	-1.2
3,303,694	-		GFF3249	0.20	-1.8
3,303,696	+		GFF3249	0.21	-1.0
3,303,699	+		GFF3249	0.21	-1.0
3,303,716	+		GFF3249	0.22	-1.5
3,303,717	+		GFF3249	0.22	-1.3
3,303,724	-		GFF3249	0.23	-2.5
3,303,790	+		GFF3249	0.29	-0.9
3,303,790	+		GFF3249	0.29	-0.0
3,303,795	+		GFF3249	0.29	+0.6
3,303,800	+		GFF3249	0.29	-1.3
3,303,808	-		GFF3249	0.30	-1.3
3,303,808	-		GFF3249	0.30	-2.6
3,303,809	-		GFF3249	0.30	-1.5
3,303,816	+		GFF3249	0.31	-2.1
3,303,819	-		GFF3249	0.31	+0.9
3,303,825	+		GFF3249	0.32	-0.2
3,303,833	-		GFF3249	0.32	+0.4
3,303,838	-		GFF3249	0.33	-1.6
3,303,838	-		GFF3249	0.33	+0.6
3,303,844	+		GFF3249	0.33	-0.4
3,303,844	+		GFF3249	0.33	+0.3
3,303,844	+		GFF3249	0.33	+1.0
3,303,852	-		GFF3249	0.34	-0.1
3,303,852	-		GFF3249	0.34	+0.7
3,303,852	-		GFF3249	0.34	+0.2
3,303,865	+		GFF3249	0.35	-1.1
3,303,872	-		GFF3249	0.36	+1.2
3,303,872	-		GFF3249	0.36	+0.3
3,303,873	-		GFF3249	0.36	+0.4
3,303,873	-		GFF3249	0.36	-1.4
3,303,893	-		GFF3249	0.37	-1.3
3,303,894	-		GFF3249	0.37	-0.0
3,303,895	+		GFF3249	0.38	+0.2
3,303,905	-		GFF3249	0.38	-3.2
3,303,909	-		GFF3249	0.39	-2.5
3,303,909	-		GFF3249	0.39	-0.5