Strain Fitness in Sphingobium sp. HT1-2 around GFF3225

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,280,199	+				-1.3
3,280,199	+				+0.2
3,280,199	+				-0.0
3,280,199	+				-0.3
3,280,199	+				-0.4
3,280,199	+				+0.3
3,280,199	+				-2.1
3,280,199	+				-0.4
3,280,199	+				-1.1
3,280,199	+				-2.0
3,280,199	+				+0.9
3,280,207	-				+0.1
3,280,207	-				-1.3
3,280,207	-				+0.1
3,280,207	-				-0.2
3,280,207	-				-0.9
3,280,207	-				+0.4
3,280,209	+				+0.4
3,280,209	+				-0.4
3,280,209	+				+0.6
3,280,209	+				-1.3
3,280,217	-				+1.0
3,280,217	-				+0.7
3,280,217	-				-2.1
3,280,222	+				+0.7
3,280,242	+				+0.2
3,280,244	+				+1.0
3,280,249	-				-0.4
3,280,251	-				+0.2
3,280,264	-				+0.6
3,280,275	+				-0.3
3,280,275	+				-1.4
3,280,276	+				-0.5
3,280,276	+				+0.4
3,280,276	+				+0.5
3,280,276	+				-1.4
3,280,276	+				+0.7
3,280,276	+				-0.4
3,280,281	+				-1.1
3,280,281	+				-0.1
3,280,281	+				-1.9
3,280,284	-				-1.1
3,280,284	-				+0.7
3,280,284	-				+0.2
3,280,289	-				+0.3
3,280,289	-				-0.8
3,280,289	-				-2.3
3,280,295	-				-1.3
3,280,302	+				-0.2
3,280,302	+				-0.6
3,280,325	-				-0.3
3,280,328	+				+0.1
3,280,341	+				-0.7
3,280,349	-				-0.9
3,280,357	+				+1.1
3,280,367	+				-0.8
3,280,370	-				-1.1
3,280,375	-				-1.3
3,280,375	-				+0.3
3,280,389	+				-1.4
3,280,413	+				-1.4
3,280,426	-				+0.4
3,280,467	+				-0.1
3,280,475	-				-0.1
3,280,573	-				+0.1
3,280,621	+				-0.2
3,280,621	+				+0.0
3,280,621	+				-0.6
3,280,621	+				-0.7
3,280,629	-				-1.4
3,280,629	-				+0.2
3,280,629	-				-0.4
3,280,629	-				-1.6
3,280,629	-				-0.3
3,280,629	-				-0.1
3,280,629	-				-0.7
3,280,629	-				-0.7
3,280,641	+				+0.5
3,280,641	+				-0.5
3,280,641	+				+0.7
3,280,641	+				+0.6
3,280,682	-				-1.6
3,280,686	-				-1.4
3,280,700	+				-0.4
3,280,700	+				-1.5
3,280,709	+				+0.8
3,280,709	+				+1.1
3,280,717	-				-0.6
3,280,717	-				-2.1
3,280,717	-				-2.1
3,280,717	-				-0.1
3,280,717	-				-0.4
3,280,724	-				+0.1
3,280,734	+				+0.8
3,280,742	-				+0.3
3,280,796	-				-1.0
3,280,812	+				-0.8
3,280,820	-				-2.0
3,280,845	-				+0.1
3,280,856	+				-0.2
3,280,864	-				-2.6
3,280,866	+				-1.8
3,280,892	-		GFF3224	0.26	-0.1
3,280,908	-		GFF3224	0.40	-1.8
3,280,910	+		GFF3224	0.42	-1.3
3,280,910	+		GFF3224	0.42	+0.5
3,280,973	+				-0.8
3,280,986	-				-0.3
3,281,045	-				-0.4
3,281,406	+				+0.0
3,281,454	+				+0.9
3,281,473	-				+1.0
3,281,481	-				+0.1
3,281,520	+				-2.3
3,281,528	+				-1.1
3,281,528	+				+1.0
3,281,528	-				-1.8
3,281,535	+				+1.5
3,281,535	+				-0.8
3,281,536	-				-0.1
3,281,536	-				+0.0
3,281,536	-				+0.1
3,281,555	-				-0.7
3,281,561	+				-0.7
3,281,569	+				-0.6
3,281,569	-				-0.8
3,281,574	-				-0.5
3,281,579	-				-1.3
3,281,580	+				+0.0
3,281,587	-				-0.3
3,281,594	-				+0.3
3,281,611	+				-1.1
3,281,648	+				-0.4
3,281,651	-				-0.8
3,281,652	+				-0.4
3,281,672	+				+0.2
3,281,674	+				-1.0
3,281,674	+				+1.7
3,281,682	-				+0.9
3,281,682	-				-0.1
3,281,683	+				+0.7
3,281,683	+				-0.9
3,281,684	+				+0.6
3,281,686	-				-0.3
3,281,691	-				-0.4
3,281,691	-				+1.5
3,281,691	-				+0.7
3,281,691	-				-1.1
3,281,696	+				+0.6
3,281,696	+				-1.7
3,281,725	+				-0.5
3,281,733	-				-0.6
3,281,733	-				+0.1
3,281,733	-				+0.4
3,281,741	+				-0.3
3,281,741	-				-0.4
3,281,752	-				+0.1
3,281,766	+				-0.5
3,281,766	+				-0.9
3,281,766	+				-0.8
3,281,766	+				-2.8
3,281,766	+				-0.3
3,281,766	+				-1.4
3,281,768	+				+0.3
3,281,768	+				+0.5
3,281,771	-				-0.7
3,281,774	-				-2.1
3,281,776	-				+0.2
3,281,776	-				+0.7
3,281,776	-				+0.3
3,281,779	+				+0.5
3,281,785	+				-0.3
3,281,785	+				-0.3
3,281,786	+				+0.0
3,281,793	-				+0.3
3,281,813	+		GFF3226	0.10	-2.1
3,281,813	+		GFF3226	0.10	-0.3
3,281,824	+		GFF3226	0.12	-0.5
3,281,827	-		GFF3226	0.12	+0.0
3,281,827	-		GFF3226	0.12	-1.1
3,281,827	-		GFF3226	0.12	-0.6
3,281,827	-		GFF3226	0.12	-0.5
3,281,861	+		GFF3226	0.17	-1.5
3,281,863	+		GFF3226	0.17	-0.9
3,281,863	-		GFF3226	0.17	+0.6
3,281,863	-		GFF3226	0.17	+0.5
3,281,863	-		GFF3226	0.17	-0.9
3,281,868	+		GFF3226	0.18	-1.5
3,281,868	+		GFF3226	0.18	+0.6
3,281,868	-		GFF3226	0.18	-0.3
3,281,869	+		GFF3226	0.18	+0.3
3,281,869	-		GFF3226	0.18	+0.3
3,281,870	+		GFF3226	0.18	-0.3
3,281,873	+		GFF3226	0.19	-1.2
3,281,876	-		GFF3226	0.19	+1.0
3,281,880	+		GFF3226	0.20	+0.0
3,281,880	+		GFF3226	0.20	-0.3
3,281,880	+		GFF3226	0.20	-1.5
3,281,880	+		GFF3226	0.20	-0.4
3,281,880	+		GFF3226	0.20	-0.8
3,281,880	+		GFF3226	0.20	-0.3
3,281,880	+		GFF3226	0.20	-0.3
3,281,880	+		GFF3226	0.20	-1.2
3,281,880	+		GFF3226	0.20	+0.2
3,281,880	+		GFF3226	0.20	-0.7
3,281,880	+		GFF3226	0.20	-1.5
3,281,880	+		GFF3226	0.20	-0.8
3,281,880	+		GFF3226	0.20	-0.5
3,281,880	+		GFF3226	0.20	-1.5
3,281,880	+		GFF3226	0.20	+0.3
3,281,880	+		GFF3226	0.20	+0.3
3,281,880	+		GFF3226	0.20	+0.3
3,281,880	+		GFF3226	0.20	+0.2
3,281,880	+		GFF3226	0.20	+0.1
3,281,880	+		GFF3226	0.20	-2.1
3,281,880	+		GFF3226	0.20	-1.7
3,281,880	+		GFF3226	0.20	-1.1
3,281,881	+		GFF3226	0.20	-0.3
3,281,883	-		GFF3226	0.20	-0.4
3,281,883	-		GFF3226	0.20	+0.6
3,281,883	-		GFF3226	0.20	+0.0
3,281,886	-		GFF3226	0.21	-0.7
3,281,888	-		GFF3226	0.21	-1.2
3,281,888	-		GFF3226	0.21	-0.8
3,281,888	-		GFF3226	0.21	+0.3
3,281,888	-		GFF3226	0.21	+0.5
3,281,888	-		GFF3226	0.21	-0.8
3,281,888	-		GFF3226	0.21	+0.0
3,281,888	-		GFF3226	0.21	-0.2
3,281,888	-		GFF3226	0.21	-0.7
3,281,888	-		GFF3226	0.21	+0.6
3,281,888	-		GFF3226	0.21	-2.2
3,281,888	-		GFF3226	0.21	-1.5
3,281,888	-		GFF3226	0.21	+0.5
3,281,888	-		GFF3226	0.21	-1.7
3,281,888	-		GFF3226	0.21	-0.6
3,281,888	-		GFF3226	0.21	-1.3
3,281,888	-		GFF3226	0.21	+0.7
3,281,888	-		GFF3226	0.21	+1.1
3,281,888	-		GFF3226	0.21	-1.5
3,281,888	-		GFF3226	0.21	-0.1
3,281,888	-		GFF3226	0.21	-0.5
3,281,888	-		GFF3226	0.21	-2.1
3,281,888	-		GFF3226	0.21	-0.8
3,281,888	-		GFF3226	0.21	-1.2
3,281,889	+		GFF3226	0.21	-0.8
3,281,897	-		GFF3226	0.22	+0.3
3,281,899	+		GFF3226	0.23	-0.7
3,281,899	+		GFF3226	0.23	+1.8
3,281,900	+		GFF3226	0.23	-2.1
3,281,907	-		GFF3226	0.24	+0.9
3,281,908	-		GFF3226	0.24	+0.1
3,281,910	+		GFF3226	0.24	-1.3
3,281,910	+		GFF3226	0.24	-1.3
3,281,910	+		GFF3226	0.24	-0.0
3,281,910	+		GFF3226	0.24	-1.3
3,281,915	+		GFF3226	0.25	+0.6
3,281,916	-		GFF3226	0.25	-1.3
3,281,924	-		GFF3226	0.26	-1.3
3,281,963	+		GFF3226	0.32	-0.6
3,281,970	+		GFF3226	0.33	+0.2
3,281,973	-		GFF3226	0.33	+1.3
3,281,975	+		GFF3226	0.33	-0.8
3,281,975	+		GFF3226	0.33	-0.1
3,281,998	+		GFF3226	0.37	-2.1
3,281,998	+		GFF3226	0.37	+0.1
3,282,003	+		GFF3226	0.38	-3.0
3,282,006	-		GFF3226	0.38	-1.1
3,282,009	+		GFF3226	0.38	-1.2
3,282,012	-		GFF3226	0.39	-1.0
3,282,016	+		GFF3226	0.39	-1.9
3,282,017	-		GFF3226	0.40	-2.0
3,282,017	-		GFF3226	0.40	-0.3
3,282,023	+		GFF3226	0.40	-1.2
3,282,023	+		GFF3226	0.40	+0.2
3,282,023	+		GFF3226	0.40	+0.4
3,282,023	+		GFF3226	0.40	-1.9
3,282,023	+		GFF3226	0.40	+0.3
3,282,026	-		GFF3226	0.41	+0.5
3,282,026	-		GFF3226	0.41	+1.0
3,282,031	-		GFF3226	0.42	-0.3
3,282,031	-		GFF3226	0.42	+0.0
3,282,032	+		GFF3226	0.42	-0.8
3,282,032	+		GFF3226	0.42	-1.1
3,282,032	+		GFF3226	0.42	-1.5
3,282,037	+		GFF3226	0.42	+0.0
3,282,037	+		GFF3226	0.42	+0.9
3,282,037	+		GFF3226	0.42	+0.0
3,282,037	+		GFF3226	0.42	-0.8
3,282,038	+		GFF3226	0.43	+1.2
3,282,038	+		GFF3226	0.43	-1.2
3,282,038	+		GFF3226	0.43	-1.3
3,282,038	+		GFF3226	0.43	-0.8
3,282,038	-		GFF3226	0.43	+0.2
3,282,040	-		GFF3226	0.43	+0.8
3,282,040	-		GFF3226	0.43	-0.2
3,282,045	-		GFF3226	0.44	+1.0
3,282,046	-		GFF3226	0.44	+0.1
3,282,046	-		GFF3226	0.44	-0.1
3,282,046	-		GFF3226	0.44	-0.1
3,282,046	-		GFF3226	0.44	+0.2
3,282,060	-		GFF3226	0.46	+0.2
3,282,062	+		GFF3226	0.46	+0.7
3,282,070	-		GFF3226	0.47	-1.2
3,282,070	-		GFF3226	0.47	+0.5
3,282,070	-		GFF3226	0.47	-1.7
3,282,108	-		GFF3226	0.53	+0.1
3,282,119	+		GFF3226	0.54	-1.4
3,282,119	+		GFF3226	0.54	-0.8
3,282,127	-		GFF3226	0.55	-0.5
3,282,127	-		GFF3226	0.55	+0.2
3,282,127	-		GFF3226	0.55	-0.2
3,282,130	+		GFF3226	0.56	-1.7
3,282,150	+		GFF3226	0.59	-0.1
3,282,150	+		GFF3226	0.59	-0.4
3,282,158	-		GFF3226	0.60	+0.6
3,282,166	+		GFF3226	0.61	-1.4
3,282,166	+		GFF3226	0.61	-0.6
3,282,174	-		GFF3226	0.62	+0.2
3,282,174	-		GFF3226	0.62	-1.3
3,282,174	-		GFF3226	0.62	-1.3
3,282,174	-		GFF3226	0.62	-1.3
3,282,190	+		GFF3226	0.64	-1.1
3,282,202	+		GFF3226	0.66	-0.6
3,282,202	+		GFF3226	0.66	-0.9
3,282,202	+		GFF3226	0.66	-3.2
3,282,202	+		GFF3226	0.66	-1.3
3,282,212	+		GFF3226	0.68	-0.4
3,282,212	+		GFF3226	0.68	-0.7
3,282,217	+		GFF3226	0.68	-0.3
3,282,217	+		GFF3226	0.68	+0.9
3,282,222	+		GFF3226	0.69	-0.9
3,282,222	+		GFF3226	0.69	-0.2
3,282,225	-		GFF3226	0.69	+0.0
3,282,225	-		GFF3226	0.69	-0.1
3,282,227	+		GFF3226	0.70	-0.1
3,282,230	-		GFF3226	0.70	+1.6
3,282,230	-		GFF3226	0.70	+0.3
3,282,230	-		GFF3226	0.70	-0.7
3,282,255	-		GFF3226	0.74	-0.1
3,282,286	+		GFF3226	0.78	+1.3
3,282,290	+		GFF3226	0.79	+0.3
3,282,293	+		GFF3226	0.79	-0.6
3,282,318	+		GFF3226	0.83	-1.2
3,282,323	-		GFF3226	0.83	+0.3
3,282,326	-		GFF3226	0.84	+1.1