Strain Fitness in Sphingobium sp. HT1-2 around GFF3166

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,227,378	+				-1.2
3,227,378	+				+0.8
3,227,402	+				-1.5
3,227,403	+				-1.2
3,227,410	-				-0.8
3,227,411	-				-0.8
3,227,411	-				+1.0
3,227,416	+				-0.2
3,227,416	+				-1.4
3,227,424	-				+0.0
3,227,424	-				-0.3
3,227,424	-				+0.7
3,227,431	+				-0.1
3,227,508	+				-1.6
3,227,516	+				+0.7
3,227,519	-				-0.3
3,227,523	-				-1.2
3,227,525	+				-0.9
3,227,525	+				-1.1
3,227,533	-				+0.2
3,227,542	-				-1.9
3,227,558	-				-0.4
3,227,562	+				-2.0
3,227,570	-				-0.2
3,227,629	+				+1.5
3,227,629	+				-1.9
3,227,629	+				+0.7
3,227,634	+				-0.8
3,227,634	+				-1.1
3,227,637	-				-0.5
3,227,637	-				+1.0
3,227,637	-				+0.7
3,227,642	-				-1.5
3,227,645	+				-0.8
3,227,645	+				+0.4
3,227,653	-				-1.7
3,227,653	-				+0.6
3,227,655	+				+0.9
3,227,655	+				-0.2
3,227,655	+				-0.3
3,227,655	+				-0.6
3,227,655	+				-1.9
3,227,655	+				-0.0
3,227,655	+				+0.2
3,227,655	+				-1.3
3,227,655	+				-0.7
3,227,655	+				-0.5
3,227,655	+				-0.9
3,227,655	+				+1.1
3,227,655	+				+0.3
3,227,655	+				+0.7
3,227,655	+				-0.2
3,227,655	+				-0.2
3,227,655	+				-0.1
3,227,655	+				+0.1
3,227,655	+				-1.9
3,227,655	+				-1.1
3,227,655	+				-0.4
3,227,655	+				+0.9
3,227,655	+				+1.1
3,227,655	+				-0.0
3,227,655	+				+1.2
3,227,655	+				+0.8
3,227,655	+				-0.2
3,227,663	-				+1.7
3,227,663	-				-0.1
3,227,663	-				+1.4
3,227,663	-				-0.3
3,227,663	-				+0.5
3,227,663	-				-0.7
3,227,663	-				-0.5
3,227,663	-				-0.9
3,227,663	-				-1.4
3,227,663	-				+0.9
3,227,663	-				+0.5
3,227,663	-				-2.4
3,227,663	-				+0.7
3,227,663	-				-0.9
3,227,663	-				+0.6
3,227,663	-				+0.1
3,227,663	-				+0.0
3,227,663	-				-2.5
3,227,663	-				-0.0
3,227,663	-				-1.1
3,227,674	-				-1.5
3,227,689	-				+0.4
3,227,689	-				-1.7
3,227,701	+				-0.2
3,227,701	+				-1.3
3,227,709	-				-0.4
3,227,709	-				-0.4
3,227,727	-				-2.2
3,227,734	+				-0.3
3,227,742	-				+1.0
3,227,759	+				-0.6
3,227,759	+				-0.3
3,227,759	+				-1.2
3,227,759	+				-1.4
3,227,759	+				-0.3
3,227,759	+				+0.8
3,227,759	+				-2.3
3,227,759	+				-0.8
3,227,759	+				-0.1
3,227,759	+				-1.7
3,227,759	+				-0.8
3,227,764	+		GFF3167	0.10	-0.6
3,227,764	+		GFF3167	0.10	-1.2
3,227,767	-		GFF3167	0.10	-0.9
3,227,767	-		GFF3167	0.10	-0.2
3,227,767	-		GFF3167	0.10	-1.0
3,227,767	-		GFF3167	0.10	-1.4
3,227,767	-		GFF3167	0.10	+0.5
3,227,767	-		GFF3167	0.10	-0.5
3,227,767	-		GFF3167	0.10	+0.2
3,227,767	-		GFF3167	0.10	+0.2
3,227,767	-		GFF3167	0.10	-0.9
3,227,767	-		GFF3167	0.10	-0.1
3,227,767	-		GFF3167	0.10	-0.3
3,227,772	-		GFF3167	0.10	-0.2
3,227,786	+		GFF3167	0.11	+0.7
3,227,786	+		GFF3167	0.11	-0.6
3,227,786	+		GFF3167	0.11	-1.0
3,227,786	+		GFF3167	0.11	-0.0
3,227,786	+		GFF3167	0.11	-0.8
3,227,794	-		GFF3167	0.11	-0.6
3,227,794	-		GFF3167	0.11	-1.5
3,227,794	-		GFF3167	0.11	+0.5
3,227,794	-		GFF3167	0.11	+1.2
3,227,794	-		GFF3167	0.11	-0.1
3,227,797	+		GFF3167	0.12	-0.2
3,227,797	+		GFF3167	0.12	-1.4
3,227,805	+		GFF3167	0.12	+0.5
3,227,808	-		GFF3167	0.12	+1.5
3,227,813	-		GFF3167	0.12	-0.1
3,227,813	-		GFF3167	0.12	-0.5
3,227,813	-		GFF3167	0.12	+1.8
3,227,813	-		GFF3167	0.12	-1.8
3,227,848	+		GFF3167	0.14	-0.1
3,227,850	+		GFF3167	0.14	-0.2
3,227,850	+		GFF3167	0.14	-0.3
3,227,906	+		GFF3167	0.16	+0.5
3,227,912	+		GFF3167	0.17	+1.3
3,227,920	+		GFF3167	0.17	-0.3
3,227,920	-		GFF3167	0.17	-0.3
3,227,920	-		GFF3167	0.17	-0.0
3,227,928	-		GFF3167	0.17	-0.5
3,227,953	+		GFF3167	0.18	-2.0
3,227,953	+		GFF3167	0.18	+0.2
3,227,953	+		GFF3167	0.18	-0.5
3,227,953	+		GFF3167	0.18	-0.4
3,227,953	+		GFF3167	0.18	-1.4
3,227,953	+		GFF3167	0.18	-0.9
3,227,953	+		GFF3167	0.18	-1.5
3,227,953	+		GFF3167	0.18	-0.3
3,227,953	+		GFF3167	0.18	-2.5
3,227,953	+		GFF3167	0.18	+0.6
3,227,953	+		GFF3167	0.18	-0.2
3,227,953	+		GFF3167	0.18	-1.8
3,227,953	+		GFF3167	0.18	-0.5
3,227,953	+		GFF3167	0.18	-0.5
3,227,953	+		GFF3167	0.18	-0.9
3,227,953	+		GFF3167	0.18	-0.3
3,227,953	+		GFF3167	0.18	-0.1
3,227,953	+		GFF3167	0.18	-1.1
3,227,956	-		GFF3167	0.19	+0.9
3,227,961	-		GFF3167	0.19	+1.8
3,227,961	-		GFF3167	0.19	-1.2
3,227,961	-		GFF3167	0.19	-1.3
3,227,961	-		GFF3167	0.19	-0.5
3,227,961	-		GFF3167	0.19	+0.4
3,227,961	-		GFF3167	0.19	-0.9
3,227,961	-		GFF3167	0.19	-1.1
3,227,961	-		GFF3167	0.19	+1.1
3,227,961	-		GFF3167	0.19	-1.2
3,227,961	-		GFF3167	0.19	-1.2
3,227,961	-		GFF3167	0.19	-2.9
3,227,961	-		GFF3167	0.19	+0.9
3,227,961	-		GFF3167	0.19	-1.7
3,227,961	-		GFF3167	0.19	-0.4
3,227,974	+		GFF3167	0.19	+0.0
3,227,974	-		GFF3167	0.19	-0.9
3,227,986	+		GFF3167	0.20	+0.4
3,227,987	+		GFF3167	0.20	-1.0
3,228,032	+		GFF3167	0.22	-0.6
3,228,035	-		GFF3167	0.22	+1.2
3,228,039	+		GFF3167	0.22	-1.5
3,228,056	-		GFF3167	0.23	-0.3
3,228,071	-		GFF3167	0.24	+1.2
3,228,077	+		GFF3167	0.24	-1.7
3,228,083	+		GFF3167	0.24	+0.1
3,228,085	+		GFF3167	0.24	-0.3
3,228,095	+		GFF3167	0.25	+0.3
3,228,099	+		GFF3167	0.25	-0.4
3,228,107	-		GFF3167	0.25	-0.2
3,228,124	+		GFF3167	0.26	+0.3
3,228,160	+		GFF3167	0.28	-0.2
3,228,160	+		GFF3167	0.28	-0.0
3,228,162	-		GFF3167	0.28	+0.0
3,228,168	-		GFF3167	0.28	-1.0
3,228,174	+		GFF3167	0.28	+0.9
3,228,174	+		GFF3167	0.28	+0.9
3,228,174	+		GFF3167	0.28	+1.0
3,228,174	+		GFF3167	0.28	+0.7
3,228,174	+		GFF3167	0.28	-0.3
3,228,174	+		GFF3167	0.28	-1.3
3,228,174	+		GFF3167	0.28	-0.1
3,228,174	+		GFF3167	0.28	-0.9
3,228,174	+		GFF3167	0.28	-1.3
3,228,174	+		GFF3167	0.28	-1.4
3,228,174	+		GFF3167	0.28	-0.1
3,228,174	+		GFF3167	0.28	-0.2
3,228,174	+		GFF3167	0.28	+1.0
3,228,182	-		GFF3167	0.29	-0.3
3,228,182	-		GFF3167	0.29	-0.4
3,228,182	-		GFF3167	0.29	+1.2
3,228,182	-		GFF3167	0.29	+1.4
3,228,182	-		GFF3167	0.29	-0.5
3,228,182	-		GFF3167	0.29	-0.4
3,228,182	-		GFF3167	0.29	+0.6
3,228,182	-		GFF3167	0.29	-1.3
3,228,182	-		GFF3167	0.29	-0.3
3,228,182	-		GFF3167	0.29	-1.8
3,228,182	-		GFF3167	0.29	-0.4
3,228,204	+		GFF3167	0.29	-0.3