Strain Fitness in Sphingobium sp. HT1-2 around GFF3135

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,204,067	+		GFF3133	0.70	-0.3
3,204,075	-		GFF3133	0.71	+0.5
3,204,076	-		GFF3133	0.71	+0.4
3,204,098	+		GFF3133	0.74	+0.5
3,204,098	+		GFF3133	0.74	-2.7
3,204,098	+		GFF3133	0.74	+0.9
3,204,098	+		GFF3133	0.74	-0.8
3,204,098	+		GFF3133	0.74	-1.2
3,204,098	+		GFF3133	0.74	-2.3
3,204,098	+		GFF3133	0.74	-0.6
3,204,106	-		GFF3133	0.75	-0.7
3,204,106	-		GFF3133	0.75	+0.5
3,204,106	-		GFF3133	0.75	+0.1
3,204,106	-		GFF3133	0.75	-1.2
3,204,106	-		GFF3133	0.75	-1.1
3,204,108	+		GFF3133	0.75	+1.1
3,204,108	+		GFF3133	0.75	-0.2
3,204,108	+		GFF3133	0.75	-2.2
3,204,108	+		GFF3133	0.75	-0.8
3,204,108	+		GFF3133	0.75	+0.9
3,204,116	-		GFF3133	0.77	+1.5
3,204,116	-		GFF3133	0.77	-2.0
3,204,116	-		GFF3133	0.77	-0.5
3,204,122	+		GFF3133	0.77	-1.2
3,204,127	+		GFF3133	0.78	+0.4
3,204,127	+		GFF3133	0.78	-0.5
3,204,127	+		GFF3133	0.78	+0.3
3,204,127	+		GFF3133	0.78	-1.2
3,204,130	-		GFF3133	0.79	-0.4
3,204,130	-		GFF3133	0.79	-1.0
3,204,130	-		GFF3133	0.79	-0.3
3,204,132	+		GFF3133	0.79	-1.0
3,204,135	-		GFF3133	0.79	+0.7
3,204,138	+		GFF3133	0.80	-1.0
3,204,138	+		GFF3133	0.80	-0.6
3,204,146	+		GFF3133	0.81	-0.4
3,204,156	+		GFF3133	0.82	+0.0
3,204,156	+		GFF3133	0.82	-1.3
3,204,175	-		GFF3133	0.85	+0.9
3,204,177	+		GFF3133	0.85	+0.2
3,204,182	-		GFF3133	0.86	+1.2
3,204,203	+		GFF3133	0.89	-0.4
3,204,213	+				+0.4
3,204,221	-				-1.3
3,204,251	-				+0.8
3,204,261	-				+0.6
3,204,268	+				+0.9
3,204,359	-				-0.3
3,204,369	+				+0.4
3,204,412	+				-0.4
3,204,412	+				+0.9
3,204,413	-				+0.2
3,204,483	-				-0.6
3,204,493	-				-1.7
3,204,503	-				-0.6
3,204,511	+				-0.5
3,204,535	+		GFF3134	0.12	+0.1
3,204,543	-		GFF3134	0.14	-1.1
3,204,554	+		GFF3134	0.17	-0.4
3,204,587	+		GFF3134	0.26	-0.2
3,204,587	+		GFF3134	0.26	+0.1
3,204,595	-		GFF3134	0.28	+0.9
3,204,595	-		GFF3134	0.28	-1.4
3,204,595	-		GFF3134	0.28	+0.2
3,204,595	-		GFF3134	0.28	+0.0
3,204,595	-		GFF3134	0.28	-0.6
3,204,595	-		GFF3134	0.28	+0.3
3,204,597	+		GFF3134	0.28	-0.4
3,204,597	+		GFF3134	0.28	-1.2
3,204,597	+		GFF3134	0.28	+0.2
3,204,605	-		GFF3134	0.30	+0.4
3,204,605	-		GFF3134	0.30	-0.2
3,204,605	-		GFF3134	0.30	-0.6
3,204,627	+		GFF3134	0.36	+0.6
3,204,627	+		GFF3134	0.36	-0.3
3,204,627	+		GFF3134	0.36	-1.0
3,204,634	+		GFF3134	0.38	-1.0
3,204,634	+		GFF3134	0.38	+0.4
3,204,635	-		GFF3134	0.38	+0.3
3,204,642	-		GFF3134	0.40	+0.1
3,204,642	-		GFF3134	0.40	-1.5
3,204,642	-		GFF3134	0.40	+1.1
3,204,659	+		GFF3134	0.44	+0.2
3,204,659	+		GFF3134	0.44	-0.6
3,204,659	+		GFF3134	0.44	-0.1
3,204,659	+		GFF3134	0.44	-0.1
3,204,659	+		GFF3134	0.44	-0.3
3,204,667	-		GFF3134	0.47	+0.9
3,204,667	-		GFF3134	0.47	+1.2
3,204,667	-		GFF3134	0.47	-1.5
3,204,677	-		GFF3134	0.49	-0.1
3,204,712	-		GFF3134	0.58	-1.1
3,204,712	-		GFF3134	0.58	-2.5
3,204,746	+		GFF3134	0.67	-0.2
3,204,746	+		GFF3134	0.67	-0.2
3,204,746	+		GFF3134	0.67	+0.1
3,204,751	+		GFF3134	0.68	-0.0
3,204,751	+		GFF3134	0.68	+0.2
3,204,754	-		GFF3134	0.69	+0.1
3,204,754	-		GFF3134	0.69	-0.7
3,204,758	+		GFF3134	0.70	-1.9
3,204,758	+		GFF3134	0.70	-0.2
3,204,758	+		GFF3134	0.70	+0.5
3,204,817	+		GFF3134	0.85	-0.9
3,204,817	+		GFF3134	0.85	+0.2
3,204,827	+		GFF3134	0.88	-0.6
3,204,827	+		GFF3134	0.88	+0.2
3,204,835	-				-0.3
3,204,866	-				+0.1
3,204,885	+				-0.5
3,204,893	-				-1.5
3,204,916	-				+0.3
3,204,947	+				-2.0
3,204,947	+				+0.1
3,204,947	+				-1.5
3,204,947	+				-0.3
3,204,947	+				-0.1
3,204,953	+				-0.0
3,204,955	-				-1.2
3,204,955	-				-1.5
3,204,961	-				-0.8
3,204,961	-				-1.3
3,204,961	-				+0.5
3,204,962	-				-0.9
3,205,022	+				-0.8
3,205,022	+				+0.9
3,205,022	+				+0.5
3,205,022	+				-2.3
3,205,022	+				-2.2
3,205,028	-				+1.7
3,205,030	-				+0.6
3,205,030	-				+0.5
3,205,030	-				-0.2
3,205,030	-				+0.8
3,205,059	-				-0.5
3,205,059	-				-1.8
3,205,059	-				+0.4
3,205,061	+				-1.2
3,205,061	+				-0.5
3,205,090	+		GFF3135	0.13	+0.5
3,205,093	-		GFF3135	0.13	+0.7
3,205,098	-		GFF3135	0.14	+0.5
3,205,098	-		GFF3135	0.14	+0.9
3,205,118	+		GFF3135	0.18	+1.0
3,205,118	+		GFF3135	0.18	-1.3
3,205,121	-		GFF3135	0.18	+0.6
3,205,126	+		GFF3135	0.19	-1.8
3,205,126	-		GFF3135	0.19	-1.2
3,205,126	-		GFF3135	0.19	+0.0
3,205,137	+		GFF3135	0.21	+0.7
3,205,137	+		GFF3135	0.21	-0.9
3,205,143	-		GFF3135	0.22	+1.7
3,205,145	+		GFF3135	0.23	+1.0
3,205,145	-		GFF3135	0.23	+0.7
3,205,145	-		GFF3135	0.23	+0.7
3,205,145	-		GFF3135	0.23	-1.8
3,205,145	-		GFF3135	0.23	-2.3
3,205,145	-		GFF3135	0.23	+0.4
3,205,145	-		GFF3135	0.23	-1.0
3,205,145	-		GFF3135	0.23	-1.2
3,205,153	-		GFF3135	0.24	-1.4
3,205,159	+		GFF3135	0.25	-0.0
3,205,169	+		GFF3135	0.27	+0.2
3,205,169	+		GFF3135	0.27	-1.9
3,205,169	+		GFF3135	0.27	-0.3
3,205,174	+		GFF3135	0.28	-0.2
3,205,177	-		GFF3135	0.28	-1.1
3,205,177	-		GFF3135	0.28	-1.5
3,205,177	-		GFF3135	0.28	+1.7
3,205,182	-		GFF3135	0.29	+1.5
3,205,203	-		GFF3135	0.33	+1.4
3,205,250	+		GFF3135	0.42	+0.1
3,205,258	-		GFF3135	0.43	+0.4
3,205,264	+		GFF3135	0.44	-1.9
3,205,264	+		GFF3135	0.44	+0.1
3,205,264	+		GFF3135	0.44	-0.1
3,205,269	+		GFF3135	0.45	-0.6
3,205,277	-		GFF3135	0.46	+1.5
3,205,277	-		GFF3135	0.46	+0.4
3,205,279	-		GFF3135	0.47	-1.5
3,205,279	-		GFF3135	0.47	-0.6
3,205,291	+		GFF3135	0.49	-0.1
3,205,291	+		GFF3135	0.49	-1.1
3,205,298	-		GFF3135	0.50	-0.1
3,205,326	-		GFF3135	0.55	+0.7
3,205,329	+		GFF3135	0.56	-0.3
3,205,337	-		GFF3135	0.57	+0.1
3,205,345	+		GFF3135	0.59	-0.4
3,205,353	-		GFF3135	0.60	-2.0
3,205,383	-		GFF3135	0.65	+0.6
3,205,383	-		GFF3135	0.65	-0.6
3,205,384	-		GFF3135	0.66	-0.5
3,205,388	-		GFF3135	0.66	+1.0
3,205,407	-		GFF3135	0.70	+0.4
3,205,409	-		GFF3135	0.70	-0.6
3,205,443	-		GFF3135	0.76	-0.2
3,205,455	-		GFF3135	0.78	-1.1
3,205,457	+		GFF3135	0.79	-0.5
3,205,482	+		GFF3135	0.83	-1.5
3,205,490	-		GFF3135	0.85	+0.4
3,205,495	+		GFF3135	0.85	-3.1
3,205,498	-		GFF3135	0.86	-0.2
3,205,516	+		GFF3135	0.89	+0.2
3,205,534	-				-1.3
3,205,562	-				-0.0
3,205,570	+				+0.3
3,205,570	+				+1.4
3,205,578	-				-1.8
3,205,594	+				-0.2
3,205,601	+				+0.6
3,205,608	+				-0.8
3,205,609	+				+0.2
3,205,627	-				-0.1
3,205,713	-				-0.2
3,205,732	+				-0.3
3,205,738	+				-0.1
3,205,754	-				+1.4
3,205,775	-				-0.4
3,205,803	+				+0.1
3,205,812	+				-0.9
3,205,829	+		GFF3136	0.11	-1.7
3,205,829	+		GFF3136	0.11	+0.5
3,205,829	+		GFF3136	0.11	-1.1
3,205,829	+		GFF3136	0.11	+0.0
3,205,829	+		GFF3136	0.11	-0.3
3,205,839	+		GFF3136	0.12	-0.0
3,205,842	+		GFF3136	0.13	+0.4
3,205,842	+		GFF3136	0.13	-0.8
3,205,842	-		GFF3136	0.13	-0.6
3,205,842	-		GFF3136	0.13	-1.0
3,205,850	-		GFF3136	0.13	-0.2
3,205,850	-		GFF3136	0.13	+0.2
3,205,850	-		GFF3136	0.13	-0.2
3,205,852	-		GFF3136	0.14	+1.2
3,205,875	+		GFF3136	0.16	-1.7
3,205,883	-		GFF3136	0.17	+0.9
3,205,883	-		GFF3136	0.17	-0.3
3,205,898	-		GFF3136	0.18	+0.2
3,205,909	+		GFF3136	0.19	+0.8
3,205,915	+		GFF3136	0.20	-0.1
3,205,917	-		GFF3136	0.20	-1.3
3,205,917	-		GFF3136	0.20	+0.8
3,205,925	+		GFF3136	0.21	+0.0
3,205,933	-		GFF3136	0.21	-0.6
3,205,933	-		GFF3136	0.21	-0.8
3,205,943	-		GFF3136	0.22	-0.7
3,205,967	+		GFF3136	0.25	-2.0
3,205,967	+		GFF3136	0.25	-1.4
3,205,967	+		GFF3136	0.25	-1.1
3,205,967	+		GFF3136	0.25	+1.1
3,205,967	+		GFF3136	0.25	-0.4
3,205,967	+		GFF3136	0.25	-0.5
3,205,967	+		GFF3136	0.25	-2.0
3,205,967	+		GFF3136	0.25	+1.0
3,205,975	-		GFF3136	0.25	-2.3
3,205,975	-		GFF3136	0.25	+1.0
3,205,975	-		GFF3136	0.25	+1.0
3,205,975	-		GFF3136	0.25	-0.3
3,205,975	-		GFF3136	0.25	+0.9
3,205,975	-		GFF3136	0.25	-1.0
3,205,975	-		GFF3136	0.25	+0.2
3,205,975	-		GFF3136	0.25	+0.6
3,205,975	-		GFF3136	0.25	-0.3
3,206,000	-		GFF3136	0.28	-0.6
3,206,017	+		GFF3136	0.29	+0.6
3,206,042	+		GFF3136	0.32	+0.4
3,206,042	+		GFF3136	0.32	-1.2
3,206,078	+		GFF3136	0.35	-0.1
3,206,079	+		GFF3136	0.35	+0.5
3,206,087	-		GFF3136	0.36	-0.9
3,206,116	-		GFF3136	0.39	+0.5
3,206,127	-		GFF3136	0.40	-0.5
3,206,143	+		GFF3136	0.41	+1.3
3,206,160	+		GFF3136	0.43	+0.7
3,206,160	+		GFF3136	0.43	+0.6
3,206,181	+		GFF3136	0.45	+0.9
3,206,191	+		GFF3136	0.46	+0.5
3,206,199	-		GFF3136	0.47	-0.4
3,206,199	-		GFF3136	0.47	-1.1
3,206,215	+		GFF3136	0.48	-0.6
3,206,215	+		GFF3136	0.48	-0.2
3,206,215	+		GFF3136	0.48	-2.0
3,206,215	+		GFF3136	0.48	-0.2
3,206,215	+		GFF3136	0.48	+0.4
3,206,215	+		GFF3136	0.48	-0.6
3,206,220	+		GFF3136	0.49	+0.5
3,206,223	-		GFF3136	0.49	+0.7
3,206,223	-		GFF3136	0.49	+0.9
3,206,223	-		GFF3136	0.49	-1.5
3,206,223	-		GFF3136	0.49	-0.8
3,206,223	-		GFF3136	0.49	-0.8
3,206,230	+		GFF3136	0.50	-2.3
3,206,230	+		GFF3136	0.50	-0.1
3,206,230	+		GFF3136	0.50	+0.4
3,206,230	+		GFF3136	0.50	+1.1
3,206,238	-		GFF3136	0.51	-0.1
3,206,238	-		GFF3136	0.51	+0.8
3,206,238	-		GFF3136	0.51	+0.3
3,206,238	-		GFF3136	0.51	+0.4
3,206,238	-		GFF3136	0.51	-1.4
3,206,238	-		GFF3136	0.51	+0.2
3,206,240	+		GFF3136	0.51	-1.1
3,206,240	+		GFF3136	0.51	-1.6
3,206,240	+		GFF3136	0.51	-1.1
3,206,240	+		GFF3136	0.51	-0.2
3,206,240	+		GFF3136	0.51	-0.7
3,206,240	+		GFF3136	0.51	-1.4
3,206,243	-		GFF3136	0.51	+0.9
3,206,243	-		GFF3136	0.51	-0.2
3,206,248	-		GFF3136	0.52	-0.1
3,206,248	-		GFF3136	0.52	-0.1
3,206,248	-		GFF3136	0.52	+0.4
3,206,248	-		GFF3136	0.52	-0.7
3,206,275	-		GFF3136	0.54	-1.0
3,206,278	+		GFF3136	0.54	+0.0
3,206,283	+		GFF3136	0.55	-2.3
3,206,283	+		GFF3136	0.55	-1.2
3,206,283	+		GFF3136	0.55	-0.3
3,206,283	+		GFF3136	0.55	+0.9
3,206,283	+		GFF3136	0.55	+0.0
3,206,288	+		GFF3136	0.55	+0.2
3,206,288	+		GFF3136	0.55	+0.8
3,206,288	+		GFF3136	0.55	-1.1
3,206,291	+		GFF3136	0.56	+0.0
3,206,291	-		GFF3136	0.56	-1.4
3,206,291	-		GFF3136	0.56	-2.2
3,206,335	+		GFF3136	0.60	-0.4
3,206,335	+		GFF3136	0.60	-0.5
3,206,335	+		GFF3136	0.60	+0.4
3,206,335	+		GFF3136	0.60	-1.4
3,206,338	-		GFF3136	0.60	+1.2
3,206,343	-		GFF3136	0.61	-1.6
3,206,343	-		GFF3136	0.61	-1.8
3,206,343	-		GFF3136	0.61	-2.2
3,206,345	+		GFF3136	0.61	+0.0
3,206,348	-		GFF3136	0.61	-0.5
3,206,348	-		GFF3136	0.61	-0.1
3,206,358	-		GFF3136	0.62	+0.8
3,206,366	+		GFF3136	0.63	-1.9
3,206,371	+		GFF3136	0.63	+0.1
3,206,371	+		GFF3136	0.63	+0.4
3,206,374	-		GFF3136	0.64	-0.7
3,206,384	-		GFF3136	0.65	-0.2
3,206,410	+		GFF3136	0.67	+1.3
3,206,418	-		GFF3136	0.68	-1.5
3,206,431	+		GFF3136	0.69	-2.5
3,206,435	+		GFF3136	0.69	+0.0
3,206,439	-		GFF3136	0.70	-1.8
3,206,441	+		GFF3136	0.70	-0.9
3,206,472	+		GFF3136	0.73	+0.6
3,206,480	-		GFF3136	0.74	-0.6
3,206,480	-		GFF3136	0.74	-1.7
3,206,509	-		GFF3136	0.77	+0.7
3,206,519	-		GFF3136	0.77	-0.4
3,206,519	-		GFF3136	0.77	-0.3
3,206,535	-		GFF3136	0.79	+0.9
3,206,535	-		GFF3136	0.79	+0.4
3,206,535	-		GFF3136	0.79	-0.9