Strain Fitness in Sphingobium sp. HT1-2 around GFF3115

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,186,460	-		GFF3114	0.59	+1.5
3,186,495	-		GFF3114	0.61	-1.0
3,186,512	-		GFF3114	0.62	-0.6
3,186,541	-		GFF3114	0.63	-0.3
3,186,565	+		GFF3114	0.64	+0.1
3,186,565	+		GFF3114	0.64	-0.6
3,186,573	-		GFF3114	0.65	+1.6
3,186,602	+		GFF3114	0.66	-0.8
3,186,649	+		GFF3114	0.68	-0.0
3,186,651	-		GFF3114	0.68	+0.7
3,186,651	-		GFF3114	0.68	-0.6
3,186,654	+		GFF3114	0.69	+1.5
3,186,654	+		GFF3114	0.69	+0.9
3,186,657	-		GFF3114	0.69	-1.2
3,186,662	-		GFF3114	0.69	+0.2
3,186,683	-		GFF3114	0.70	-0.8
3,186,693	+		GFF3114	0.71	+0.2
3,186,701	-		GFF3114	0.71	+0.5
3,186,718	+		GFF3114	0.72	-0.4
3,186,718	+		GFF3114	0.72	-0.3
3,186,718	+		GFF3114	0.72	-1.4
3,186,718	+		GFF3114	0.72	-0.7
3,186,718	+		GFF3114	0.72	-0.3
3,186,718	+		GFF3114	0.72	-1.4
3,186,718	+		GFF3114	0.72	+0.9
3,186,718	+		GFF3114	0.72	-1.3
3,186,718	+		GFF3114	0.72	-1.2
3,186,718	+		GFF3114	0.72	+0.1
3,186,718	+		GFF3114	0.72	-0.1
3,186,726	-		GFF3114	0.72	+0.4
3,186,726	-		GFF3114	0.72	-0.1
3,186,726	-		GFF3114	0.72	+1.5
3,186,726	-		GFF3114	0.72	-1.4
3,186,726	-		GFF3114	0.72	+1.0
3,186,726	-		GFF3114	0.72	+0.9
3,186,726	-		GFF3114	0.72	-0.1
3,186,735	+		GFF3114	0.73	-0.4
3,186,739	+		GFF3114	0.73	+1.6
3,186,739	+		GFF3114	0.73	-0.8
3,186,739	+		GFF3114	0.73	+0.9
3,186,744	+		GFF3114	0.73	+1.3
3,186,744	+		GFF3114	0.73	-0.1
3,186,744	+		GFF3114	0.73	+0.4
3,186,753	+		GFF3114	0.73	+1.7
3,186,755	+		GFF3114	0.74	-0.7
3,186,777	+		GFF3114	0.75	-2.1
3,186,785	-		GFF3114	0.75	-1.2
3,186,785	-		GFF3114	0.75	+0.4
3,186,799	+		GFF3114	0.76	+0.8
3,186,805	-		GFF3114	0.76	-1.5
3,186,805	-		GFF3114	0.76	-1.3
3,186,843	+		GFF3114	0.78	+1.5
3,186,843	+		GFF3114	0.78	-0.1
3,186,843	+		GFF3114	0.78	-0.8
3,186,851	-		GFF3114	0.78	+0.1
3,186,851	-		GFF3114	0.78	-0.3
3,186,851	-		GFF3114	0.78	-0.4
3,186,868	+		GFF3114	0.79	-0.3
3,186,918	+		GFF3114	0.81	-1.4
3,186,928	+		GFF3114	0.82	+0.5
3,186,928	+		GFF3114	0.82	-2.4
3,186,928	+		GFF3114	0.82	-0.6
3,186,928	+		GFF3114	0.82	+0.8
3,186,928	+		GFF3114	0.82	-0.1
3,186,928	+		GFF3114	0.82	-0.6
3,186,928	+		GFF3114	0.82	+0.8
3,186,928	+		GFF3114	0.82	-1.0
3,186,928	+		GFF3114	0.82	+1.3
3,186,928	+		GFF3114	0.82	+0.6
3,186,928	+		GFF3114	0.82	-0.3
3,186,928	+		GFF3114	0.82	+0.4
3,186,928	+		GFF3114	0.82	+0.2
3,186,936	-		GFF3114	0.82	+0.3
3,186,936	-		GFF3114	0.82	-0.5
3,186,936	-		GFF3114	0.82	-1.1
3,186,936	-		GFF3114	0.82	-0.6
3,186,936	-		GFF3114	0.82	-0.1
3,186,936	-		GFF3114	0.82	-0.1
3,186,936	-		GFF3114	0.82	+1.1
3,186,936	-		GFF3114	0.82	-0.8
3,186,936	-		GFF3114	0.82	-1.5
3,186,936	-		GFF3114	0.82	+0.5
3,186,942	+		GFF3114	0.83	-2.1
3,186,942	+		GFF3114	0.83	+1.0
3,186,946	-		GFF3114	0.83	-0.8
3,186,947	+		GFF3114	0.83	-1.4
3,186,954	+		GFF3114	0.83	-1.2
3,186,954	+		GFF3114	0.83	+0.1
3,186,985	-		GFF3114	0.85	-0.4
3,187,002	+		GFF3114	0.85	-0.0
3,187,016	+		GFF3114	0.86	+1.2
3,187,031	+		GFF3114	0.87	+0.7
3,187,031	+		GFF3114	0.87	-0.3
3,187,044	-		GFF3114	0.87	-1.4
3,187,048	+		GFF3114	0.88	-1.0
3,187,054	-		GFF3114	0.88	+1.5
3,187,056	-		GFF3114	0.88	+0.1
3,187,056	-		GFF3114	0.88	-0.4
3,187,056	-		GFF3114	0.88	-0.6
3,187,062	-		GFF3114	0.88	-0.8
3,187,063	-		GFF3114	0.88	+0.8
3,187,064	-		GFF3114	0.88	+0.4
3,187,064	-		GFF3114	0.88	-0.8
3,187,066	+		GFF3114	0.89	-0.3
3,187,066	+		GFF3114	0.89	+0.4
3,187,090	-		GFF3114	0.90	-0.4
3,187,097	-				-1.6
3,187,136	+				-0.9
3,187,144	-				+0.9
3,187,144	-				+0.4
3,187,146	-				+0.2
3,187,146	-				+0.0
3,187,146	-				-0.7
3,187,164	-				+0.3
3,187,166	+				-0.5
3,187,171	+				-0.7
3,187,174	-				-0.1
3,187,179	-				+0.6
3,187,179	-				-1.7
3,187,192	-				-0.2
3,187,192	-				+0.0
3,187,206	-				+0.6
3,187,208	-				-1.7
3,187,208	-				+0.2
3,187,243	-				+0.4
3,187,268	+				-0.3
3,187,278	+				-1.3
3,187,278	+				+0.3
3,187,278	+				-0.4
3,187,286	-				+0.7
3,187,286	-				-0.2
3,187,286	-				-0.5
3,187,286	-				-0.9
3,187,286	-				-1.3
3,187,286	-				-1.5
3,187,286	-				-0.2
3,187,286	-				+0.9
3,187,286	-				-0.5
3,187,320	+				-1.8
3,187,332	+				-0.8
3,187,350	-				+0.2
3,187,363	+				+0.7
3,188,283	-				-0.8
3,188,295	+				+1.5
3,188,309	+				-0.1
3,188,322	+				+0.1
3,188,776	+				-0.1
3,188,802	+				-0.9
3,188,802	+				-0.7
3,188,805	-				-1.5
3,188,807	+				-0.3
3,188,809	+				-1.4
3,188,855	+				-0.4
3,188,869	+				+0.5
3,188,876	+		GFF3117	0.11	-0.5
3,188,920	+		GFF3117	0.18	-0.3
3,188,939	+		GFF3117	0.21	-0.6
3,188,939	+		GFF3117	0.21	-1.0
3,188,939	+		GFF3117	0.21	-0.4
3,188,939	+		GFF3117	0.21	+1.4
3,188,939	+		GFF3117	0.21	+0.8
3,188,947	-		GFF3117	0.23	-1.8
3,188,947	-		GFF3117	0.23	+1.5
3,188,947	-		GFF3117	0.23	-1.7
3,188,947	-		GFF3117	0.23	+0.3
3,188,952	-		GFF3117	0.24	-0.4
3,188,960	+		GFF3117	0.25	+0.9
3,189,019	+		GFF3117	0.35	-2.8
3,189,030	-		GFF3117	0.37	-1.5
3,189,031	+		GFF3117	0.37	-0.8
3,189,031	+		GFF3117	0.37	+0.8
3,189,036	-		GFF3117	0.38	-1.2
3,189,036	-		GFF3117	0.38	+0.3
3,189,064	+		GFF3117	0.42	-2.0
3,189,071	+		GFF3117	0.44	-1.3
3,189,072	-		GFF3117	0.44	-1.4
3,189,078	+		GFF3117	0.45	-0.3
3,189,086	-		GFF3117	0.46	+0.6
3,189,092	-		GFF3117	0.47	-1.1
3,189,132	+		GFF3117	0.54	-0.7
3,189,140	-		GFF3117	0.55	-0.1
3,189,177	+		GFF3117	0.61	-0.4
3,189,177	+		GFF3117	0.61	-0.4
3,189,193	-		GFF3117	0.64	-0.1
3,189,199	+		GFF3117	0.65	+0.5
3,189,207	-		GFF3117	0.66	-0.1
3,189,207	-		GFF3117	0.66	-2.4
3,189,211	+		GFF3117	0.67	-0.3
3,189,232	+		GFF3117	0.71	+1.1
3,189,265	+		GFF3117	0.76	+0.5
3,189,280	+		GFF3117	0.79	-0.4