Strain Fitness in Sphingobium sp. HT1-2 around GFF3095

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,157,231	-		GFF3092	0.84	-0.7
3,157,244	-		GFF3092	0.86	+0.2
3,157,244	-		GFF3092	0.86	+0.0
3,157,282	+				-0.1
3,157,282	+				-0.8
3,157,290	-				+0.6
3,157,348	-				+1.7
3,157,353	+				-0.2
3,157,353	+				-0.5
3,157,359	+				+0.1
3,157,361	-				+0.4
3,157,367	-				+1.4
3,157,372	+				-1.2
3,157,378	+		GFF3093	0.11	-1.1
3,157,378	+		GFF3093	0.11	-2.3
3,157,378	+		GFF3093	0.11	-0.8
3,157,378	+		GFF3093	0.11	+2.0
3,157,378	-		GFF3093	0.11	-0.3
3,157,386	-		GFF3093	0.12	+1.4
3,157,386	-		GFF3093	0.12	+1.2
3,157,386	-		GFF3093	0.12	-0.6
3,157,386	-		GFF3093	0.12	-1.2
3,157,386	-		GFF3093	0.12	-0.2
3,157,386	-		GFF3093	0.12	-0.5
3,157,386	-		GFF3093	0.12	+0.8
3,157,386	-		GFF3093	0.12	-1.2
3,157,386	-		GFF3093	0.12	-0.5
3,157,389	+		GFF3093	0.12	+0.2
3,157,389	+		GFF3093	0.12	-0.6
3,157,392	-		GFF3093	0.13	-1.2
3,157,396	+		GFF3093	0.13	+0.5
3,157,397	-		GFF3093	0.14	+0.4
3,157,397	-		GFF3093	0.14	-0.5
3,157,397	-		GFF3093	0.14	+0.4
3,157,397	-		GFF3093	0.14	-1.6
3,157,397	-		GFF3093	0.14	+0.4
3,157,403	+		GFF3093	0.15	+0.1
3,157,403	+		GFF3093	0.15	-1.6
3,157,403	+		GFF3093	0.15	+0.1
3,157,427	+		GFF3093	0.19	+0.3
3,157,427	+		GFF3093	0.19	-0.1
3,157,427	+		GFF3093	0.19	+0.4
3,157,430	-		GFF3093	0.19	-2.9
3,157,433	+		GFF3093	0.20	-1.6
3,157,435	-		GFF3093	0.20	-0.6
3,157,435	-		GFF3093	0.20	-0.1
3,157,435	-		GFF3093	0.20	+0.4
3,157,439	+		GFF3093	0.21	-0.3
3,157,447	-		GFF3093	0.22	+1.3
3,157,474	-		GFF3093	0.26	-0.6
3,157,480	+		GFF3093	0.27	+0.5
3,157,482	-		GFF3093	0.28	+0.4
3,157,483	-		GFF3093	0.28	-1.5
3,157,483	-		GFF3093	0.28	-1.3
3,157,483	-		GFF3093	0.28	+0.8
3,157,507	+		GFF3093	0.32	+0.8
3,157,507	+		GFF3093	0.32	-0.1
3,157,507	+		GFF3093	0.32	-0.9
3,157,515	-		GFF3093	0.33	+0.7
3,157,517	-		GFF3093	0.33	-0.4
3,157,528	+		GFF3093	0.35	+1.1
3,157,528	+		GFF3093	0.35	-1.7
3,157,528	+		GFF3093	0.35	-1.6
3,157,536	-		GFF3093	0.36	+1.1
3,157,536	-		GFF3093	0.36	-0.3
3,157,536	-		GFF3093	0.36	-0.1
3,157,536	-		GFF3093	0.36	-1.6
3,157,536	-		GFF3093	0.36	+0.8
3,157,536	-		GFF3093	0.36	-2.1
3,157,540	+		GFF3093	0.37	-1.9
3,157,546	+		GFF3093	0.38	+1.4
3,157,552	+		GFF3093	0.39	-1.2
3,157,578	+		GFF3093	0.43	+0.4
3,157,578	+		GFF3093	0.43	-1.7
3,157,588	+		GFF3093	0.45	+0.9
3,157,588	+		GFF3093	0.45	+0.8
3,157,588	+		GFF3093	0.45	-0.3
3,157,596	-		GFF3093	0.46	+0.4
3,157,596	-		GFF3093	0.46	-1.2
3,157,596	-		GFF3093	0.46	-0.1
3,157,596	-		GFF3093	0.46	-1.0
3,157,596	-		GFF3093	0.46	+0.2
3,157,607	+		GFF3093	0.48	+0.9
3,157,607	+		GFF3093	0.48	-0.4
3,157,607	+		GFF3093	0.48	-0.2
3,157,615	-		GFF3093	0.49	+0.3
3,157,621	-		GFF3093	0.50	-0.2
3,157,627	-		GFF3093	0.51	-1.2
3,157,633	+		GFF3093	0.52	+0.4
3,157,641	-		GFF3093	0.54	-0.6
3,157,647	-		GFF3093	0.55	+0.1
3,157,653	+		GFF3093	0.56	+0.9
3,157,661	-		GFF3093	0.57	+0.4
3,157,665	+		GFF3093	0.58	-1.0
3,157,671	-		GFF3093	0.59	-1.2
3,157,677	+		GFF3093	0.60	-0.4
3,157,677	+		GFF3093	0.60	-0.1
3,157,685	-		GFF3093	0.61	+0.4
3,157,685	-		GFF3093	0.61	-2.4
3,157,685	-		GFF3093	0.61	-0.6
3,157,685	-		GFF3093	0.61	-1.3
3,157,695	+		GFF3093	0.63	-0.1
3,157,708	+		GFF3093	0.65	-0.1
3,157,708	-		GFF3093	0.65	+0.1
3,157,724	-		GFF3093	0.67	-0.2
3,157,735	+		GFF3093	0.69	+1.0
3,157,740	+		GFF3093	0.70	-1.4
3,157,743	-		GFF3093	0.70	-0.6
3,157,749	-		GFF3093	0.71	+0.4
3,157,784	+		GFF3093	0.77	-1.3
3,157,805	+		GFF3093	0.81	-0.3
3,157,812	-		GFF3093	0.82	-2.1
3,157,813	-		GFF3093	0.82	-0.9
3,157,817	+		GFF3093	0.83	+0.9
3,157,822	+		GFF3093	0.83	-1.6
3,157,825	-		GFF3093	0.84	-0.6
3,157,827	+		GFF3093	0.84	+0.1
3,157,830	-		GFF3093	0.85	-1.3
3,157,837	+		GFF3093	0.86	-0.9
3,157,837	+		GFF3093	0.86	-1.6
3,157,845	-		GFF3093	0.87	-1.9
3,157,872	+				-0.2
3,157,882	+				-1.2
3,157,890	-				+0.6
3,157,891	-				-1.9
3,157,891	-				+0.4
3,157,893	+				-0.2
3,157,992	-				-1.2
3,159,979	+				-0.7
3,159,979	+				-0.1
3,159,979	+				+0.7
3,159,979	+				+0.5
3,159,979	+				+0.4
3,159,987	-				-1.3
3,159,987	-				+0.8
3,159,987	-				+0.5
3,159,987	-				+1.4
3,159,987	-				-0.3
3,159,987	-				-0.0
3,159,987	-				+0.2
3,159,987	-				+1.0
3,159,987	-				+0.0
3,159,987	-				-1.6
3,159,987	-				+0.0
3,159,987	-				+0.7
3,159,987	-				-0.0
3,160,047	+				+1.5
3,160,047	-				-0.6
3,160,075	-				-1.2
3,160,084	+				+1.0
3,160,084	+				-0.2
3,160,084	+				-1.1
3,160,084	+				+0.2
3,160,097	-				-0.5
3,160,107	-				-0.9
3,160,137	+				-1.7
3,160,137	+				-2.0
3,160,145	-				+0.1
3,160,145	-				+1.1
3,160,161	+				-2.0
3,160,161	+				-0.1
3,160,161	+				-0.4
3,160,161	+				-0.3
3,160,161	+				-0.9
3,160,161	+				-0.4
3,160,161	+				-1.2
3,160,167	+				-1.2
3,160,167	+				+0.5
3,160,169	-				+0.3
3,160,169	-				-0.4
3,160,169	-				-0.5
3,160,170	-				+0.1
3,160,170	-				-2.1
3,160,175	-				-1.5
3,160,181	+				-1.4
3,160,181	+				+0.2
3,160,181	+				-0.1
3,160,189	-				+0.0
3,160,189	-				+0.8
3,160,191	+				-0.2
3,160,194	-				-0.6
3,160,194	-				-0.2
3,160,210	+				+0.2
3,160,210	+				-2.0
3,160,210	+				+0.8
3,160,213	-				+0.4
3,160,218	-				-1.1
3,160,218	-				+0.2
3,160,218	-				-0.5
3,160,229	+				-0.6
3,160,232	+				+0.1
3,160,240	-				-0.5
3,160,252	+				+0.3
3,160,252	+				-1.8
3,160,252	+				+0.0
3,160,252	+				-1.0
3,160,253	+				-0.8
3,160,260	-				-1.1
3,160,260	-				+0.7
3,160,260	-				+0.5
3,160,260	-				-1.1
3,160,260	-				-0.4
3,160,271	-				-0.1
3,160,278	-				-1.4
3,160,283	-				-0.5
3,160,320	-				+1.0
3,160,322	+				+0.2
3,160,325	-				-1.6
3,160,340	+		GFF3096	0.10	-1.2
3,160,356	-		GFF3096	0.11	-1.6
3,160,365	+		GFF3096	0.11	-0.2
3,160,368	-		GFF3096	0.11	+0.5
3,160,385	+		GFF3096	0.12	+1.2
3,160,390	+		GFF3096	0.12	+0.0
3,160,390	+		GFF3096	0.12	-2.2
3,160,390	+		GFF3096	0.12	-0.3
3,160,390	+		GFF3096	0.12	-0.6
3,160,390	+		GFF3096	0.12	-0.8
3,160,390	+		GFF3096	0.12	-0.5
3,160,390	+		GFF3096	0.12	-1.2
3,160,393	-		GFF3096	0.12	-2.0
3,160,393	-		GFF3096	0.12	-0.1
3,160,395	+		GFF3096	0.13	+0.7
3,160,398	-		GFF3096	0.13	+0.2
3,160,398	-		GFF3096	0.13	+0.8
3,160,398	-		GFF3096	0.13	-1.1
3,160,398	-		GFF3096	0.13	+0.0
3,160,398	-		GFF3096	0.13	+0.0
3,160,398	-		GFF3096	0.13	-0.8
3,160,403	-		GFF3096	0.13	-0.8
3,160,420	-		GFF3096	0.14	-0.3
3,160,431	-		GFF3096	0.14	-0.5
3,160,433	+		GFF3096	0.14	-0.5
3,160,433	+		GFF3096	0.14	-1.3
3,160,433	+		GFF3096	0.14	-0.8
3,160,433	+		GFF3096	0.14	-0.3
3,160,441	-		GFF3096	0.15	-0.6
3,160,446	-		GFF3096	0.15	-0.2
3,160,451	-		GFF3096	0.15	-0.4
3,160,475	+		GFF3096	0.16	+1.1
3,160,495	+		GFF3096	0.17	-1.2
3,160,503	-		GFF3096	0.18	+0.5
3,160,513	-		GFF3096	0.18	-1.1
3,160,531	+		GFF3096	0.19	-1.1
3,160,539	-		GFF3096	0.19	+0.4
3,160,553	+		GFF3096	0.20	-0.6
3,160,555	+		GFF3096	0.20	+0.4
3,160,561	-		GFF3096	0.20	+0.5
3,160,563	+		GFF3096	0.20	+1.2
3,160,568	+		GFF3096	0.21	-0.5
3,160,568	+		GFF3096	0.21	-1.0
3,160,576	-		GFF3096	0.21	+0.2
3,160,576	-		GFF3096	0.21	-2.4
3,160,599	-		GFF3096	0.22	+0.3
3,160,599	-		GFF3096	0.22	+0.7
3,160,601	+		GFF3096	0.22	-1.8
3,160,606	+		GFF3096	0.22	+0.2
3,160,608	-		GFF3096	0.22	+0.5
3,160,614	+		GFF3096	0.23	+0.0
3,160,614	+		GFF3096	0.23	-0.5
3,160,614	+		GFF3096	0.23	-1.1
3,160,617	-		GFF3096	0.23	-0.5
3,160,622	-		GFF3096	0.23	+0.0
3,160,625	+		GFF3096	0.23	-1.1
3,160,630	+		GFF3096	0.23	-1.1
3,160,633	-		GFF3096	0.24	-0.8
3,160,635	+		GFF3096	0.24	+0.0
3,160,643	-		GFF3096	0.24	-2.0
3,160,643	-		GFF3096	0.24	-0.9
3,160,647	+		GFF3096	0.24	+0.1
3,160,647	+		GFF3096	0.24	+1.1
3,160,647	+		GFF3096	0.24	+0.2
3,160,647	+		GFF3096	0.24	+0.3
3,160,647	+		GFF3096	0.24	-0.0
3,160,647	+		GFF3096	0.24	-1.1
3,160,647	+		GFF3096	0.24	-0.7
3,160,647	+		GFF3096	0.24	+0.3
3,160,647	+		GFF3096	0.24	-0.6
3,160,653	+		GFF3096	0.25	-1.3
3,160,654	+		GFF3096	0.25	+0.4
3,160,655	-		GFF3096	0.25	-1.3
3,160,655	-		GFF3096	0.25	-0.1
3,160,655	-		GFF3096	0.25	-1.2
3,160,655	-		GFF3096	0.25	+0.4
3,160,655	-		GFF3096	0.25	-0.2
3,160,655	-		GFF3096	0.25	+0.4
3,160,655	-		GFF3096	0.25	-0.2
3,160,655	-		GFF3096	0.25	-2.2
3,160,655	-		GFF3096	0.25	+0.4
3,160,655	-		GFF3096	0.25	-0.6
3,160,655	-		GFF3096	0.25	-3.0
3,160,655	-		GFF3096	0.25	-0.2
3,160,655	-		GFF3096	0.25	-1.4
3,160,658	+		GFF3096	0.25	-0.5
3,160,661	-		GFF3096	0.25	+0.4
3,160,661	-		GFF3096	0.25	+0.9
3,160,661	-		GFF3096	0.25	+0.9
3,160,672	+		GFF3096	0.25	-1.3
3,160,678	-		GFF3096	0.26	+0.2
3,160,680	-		GFF3096	0.26	-1.5
3,160,680	-		GFF3096	0.26	-0.5
3,160,680	-		GFF3096	0.26	-0.9
3,160,680	-		GFF3096	0.26	-0.6
3,160,716	+		GFF3096	0.27	-1.0
3,160,716	+		GFF3096	0.27	+0.5
3,160,738	-		GFF3096	0.28	+0.5
3,160,741	-		GFF3096	0.29	-0.3
3,160,741	-		GFF3096	0.29	-0.9
3,160,752	+		GFF3096	0.29	-3.1
3,160,765	-		GFF3096	0.30	+0.7
3,160,771	-		GFF3096	0.30	+1.2
3,160,773	+		GFF3096	0.30	+0.0
3,160,773	+		GFF3096	0.30	-0.6
3,160,781	-		GFF3096	0.30	-0.8
3,160,795	-		GFF3096	0.31	-2.2
3,160,818	+		GFF3096	0.32	+0.7
3,160,826	-		GFF3096	0.33	-0.1
3,160,849	+		GFF3096	0.34	+1.2
3,160,849	+		GFF3096	0.34	+0.1
3,160,857	-		GFF3096	0.34	-1.1
3,160,857	-		GFF3096	0.34	-1.5
3,160,867	+		GFF3096	0.34	-1.7
3,160,867	+		GFF3096	0.34	-0.5
3,160,873	+		GFF3096	0.35	-1.5
3,160,882	+		GFF3096	0.35	+0.9
3,160,883	+		GFF3096	0.35	-2.0
3,160,891	-		GFF3096	0.36	-1.0
3,160,898	-		GFF3096	0.36	-0.7
3,160,938	+		GFF3096	0.38	-0.1
3,160,938	+		GFF3096	0.38	-0.8
3,160,938	+		GFF3096	0.38	-1.6
3,160,938	+		GFF3096	0.38	+0.5
3,160,938	+		GFF3096	0.38	+0.3
3,160,938	+		GFF3096	0.38	-2.4
3,160,938	+		GFF3096	0.38	-0.5
3,160,938	+		GFF3096	0.38	-0.6
3,160,946	-		GFF3096	0.38	-1.3
3,160,946	-		GFF3096	0.38	+0.6
3,160,946	-		GFF3096	0.38	+0.7
3,160,946	-		GFF3096	0.38	-0.3
3,160,969	+		GFF3096	0.39	+0.8
3,160,969	+		GFF3096	0.39	+0.2