Strain Fitness in Sphingobium sp. HT1-2 around GFF3084

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,148,875	+		GFF3081	0.85	-1.3
3,148,883	+		GFF3081	0.86	+0.7
3,148,892	+		GFF3081	0.87	-1.0
3,148,892	+		GFF3081	0.87	-0.0
3,148,900	-		GFF3081	0.87	+1.5
3,148,921	-		GFF3081	0.90	-0.6
3,148,925	+				-0.3
3,148,926	-				-0.5
3,148,926	-				+0.5
3,148,928	-				+0.4
3,148,947	-				-0.1
3,148,958	-				+0.3
3,148,972	+				+0.8
3,148,983	+				+0.2
3,148,983	+				-2.2
3,148,983	+				-1.1
3,148,983	+				+0.2
3,148,983	+				+0.2
3,148,983	+				+0.1
3,148,983	+				+1.2
3,148,983	+				+0.6
3,148,983	+				+1.5
3,148,983	+				-0.3
3,148,983	+				-1.9
3,148,983	+				-0.3
3,148,983	+				-0.3
3,148,991	-				-1.3
3,148,991	-				-1.1
3,148,991	-				-0.2
3,148,991	-				-0.6
3,148,991	-				+0.4
3,149,015	+				-0.2
3,149,018	-				+0.6
3,149,023	-				-1.2
3,149,049	-				-1.1
3,149,051	+				-0.6
3,149,051	+				+0.8
3,149,051	+				-3.3
3,149,051	+				+0.9
3,149,051	+				-2.6
3,149,051	+				-0.9
3,149,051	+				-0.1
3,149,051	+				-0.4
3,149,059	-				-3.0
3,149,059	-				+0.4
3,149,059	-				-1.2
3,149,059	-				+0.4
3,149,059	-				-1.2
3,149,059	-				+0.3
3,149,059	-				-1.0
3,149,059	-				+0.5
3,149,059	-				-1.9
3,149,059	-				-1.2
3,149,059	-				-0.8
3,149,059	-				-0.5
3,149,071	-				-0.1
3,149,082	-				-0.4
3,149,087	-				-0.2
3,149,095	+				+1.5
3,149,101	+				-0.1
3,149,131	+		GFF3082	0.16	-0.2
3,149,177	+		GFF3082	0.39	-0.6
3,149,185	+		GFF3082	0.44	-1.8
3,149,200	+		GFF3082	0.51	+0.0
3,149,200	+		GFF3082	0.51	+0.2
3,149,208	-		GFF3082	0.55	-1.9
3,149,208	-		GFF3082	0.55	-0.5
3,149,213	-		GFF3082	0.58	+0.8
3,149,228	+		GFF3082	0.66	-1.1
3,149,228	+		GFF3082	0.66	-0.9
3,149,246	-		GFF3082	0.75	-0.1
3,149,246	-		GFF3082	0.75	+1.2
3,149,276	+				+0.1
3,149,289	+				-0.0
3,149,338	+				-0.0
3,149,338	+				+0.8
3,149,338	+				-0.2
3,149,339	-				-1.3
3,149,346	-				-0.2
3,149,346	-				+2.0
3,149,346	-				+0.3
3,149,347	-				-0.0
3,149,353	+				+0.7
3,149,356	-				-0.2
3,149,372	+				+0.6
3,149,378	+		GFF3083	0.10	+0.5
3,149,386	-		GFF3083	0.12	+0.4
3,149,386	-		GFF3083	0.12	-0.5
3,149,386	-		GFF3083	0.12	-1.8
3,149,386	-		GFF3083	0.12	-1.5
3,149,399	+		GFF3083	0.16	-1.4
3,149,400	+		GFF3083	0.16	+0.0
3,149,408	-		GFF3083	0.18	-0.6
3,149,439	+		GFF3083	0.27	+0.6
3,149,445	+		GFF3083	0.28	+0.6
3,149,473	+		GFF3083	0.36	-0.8
3,149,473	+		GFF3083	0.36	+0.4
3,149,486	-		GFF3083	0.40	-1.0
3,149,493	+		GFF3083	0.42	-0.1
3,149,523	+		GFF3083	0.50	+0.7
3,149,523	+		GFF3083	0.50	-1.6
3,149,523	+		GFF3083	0.50	-0.3
3,149,523	+		GFF3083	0.50	-0.6
3,149,524	+		GFF3083	0.50	-1.1
3,149,524	+		GFF3083	0.50	-0.9
3,149,525	+		GFF3083	0.50	-0.8
3,149,525	+		GFF3083	0.50	-2.0
3,149,526	-		GFF3083	0.51	+2.0
3,149,526	-		GFF3083	0.51	+1.1
3,149,530	+		GFF3083	0.52	+0.5
3,149,530	+		GFF3083	0.52	+0.2
3,149,531	-		GFF3083	0.52	-1.3
3,149,531	-		GFF3083	0.52	-2.0
3,149,531	-		GFF3083	0.52	-1.1
3,149,532	-		GFF3083	0.52	-0.4
3,149,532	-		GFF3083	0.52	-0.3
3,149,533	-		GFF3083	0.52	-1.7
3,149,533	-		GFF3083	0.52	+0.2
3,149,533	-		GFF3083	0.52	+0.6
3,149,535	+		GFF3083	0.53	+1.4
3,149,535	+		GFF3083	0.53	-0.2
3,149,535	+		GFF3083	0.53	+0.3
3,149,535	+		GFF3083	0.53	+1.1
3,149,535	+		GFF3083	0.53	-0.4
3,149,535	+		GFF3083	0.53	-1.4
3,149,535	+		GFF3083	0.53	+0.1
3,149,538	-		GFF3083	0.54	-2.0
3,149,543	-		GFF3083	0.55	+0.2
3,149,543	-		GFF3083	0.55	-1.1
3,149,543	-		GFF3083	0.55	+0.7
3,149,543	-		GFF3083	0.55	+0.5
3,149,543	-		GFF3083	0.55	-1.6
3,149,543	-		GFF3083	0.55	-2.3
3,149,555	-		GFF3083	0.58	-0.0
3,149,555	-		GFF3083	0.58	-0.7
3,149,581	+		GFF3083	0.66	+0.8
3,149,589	+		GFF3083	0.68	-0.1
3,149,594	+		GFF3083	0.69	-1.1
3,149,594	+		GFF3083	0.69	+0.4
3,149,597	-		GFF3083	0.70	+1.2
3,149,597	-		GFF3083	0.70	+0.4
3,149,597	-		GFF3083	0.70	+1.1
3,149,602	-		GFF3083	0.71	-0.1
3,149,607	-		GFF3083	0.73	-0.9
3,149,643	+		GFF3083	0.83	-1.2
3,149,658	-		GFF3083	0.87	-1.0
3,149,673	-				-0.7
3,149,675	+				-0.8
3,149,683	-				-1.1
3,149,686	+				+0.9
3,149,686	+				+0.0
3,149,686	+				+0.5
3,149,694	-				+0.2
3,149,694	-				-2.0
3,149,694	-				+1.5
3,149,694	-				+0.5
3,149,694	-				-2.0
3,149,694	-				-2.4
3,149,698	+				+0.2
3,149,698	+				+0.9
3,149,698	+				-0.4
3,149,706	-				-1.9
3,149,706	-				+1.4
3,149,706	-				-0.7
3,149,708	+				+0.2
3,149,708	+				-0.5
3,149,708	+				-0.5
3,149,708	+				-0.3
3,149,716	-				-0.5
3,149,716	-				-0.4
3,149,716	-				-0.4
3,149,716	-				+1.4
3,149,716	-				-0.7
3,149,718	+				-0.0
3,149,726	+				+0.4
3,149,729	-				+0.5
3,149,741	+				+0.5
3,149,744	+				+0.1
3,149,744	-				-0.1
3,149,744	-				+0.4
3,149,759	-				-1.6
3,149,759	-				+0.4
3,149,759	-				+0.6
3,149,759	-				-2.7
3,149,759	-				-1.6
3,149,764	-				-1.0
3,149,764	-				+0.6
3,149,814	+				-0.4
3,149,817	-				-1.3
3,149,822	-				-1.1
3,149,824	+				+0.6
3,149,832	-				-1.1
3,149,832	-				-0.1
3,149,839	+				+0.8
3,149,844	-				+0.4
3,149,875	-				-0.2
3,149,915	+				-0.4
3,149,916	-				+0.8
3,149,923	-				+0.2
3,149,923	-				+0.1
3,149,939	+		GFF3084	0.10	+0.0
3,149,939	+		GFF3084	0.10	+1.2
3,149,939	+		GFF3084	0.10	-1.2
3,149,946	+		GFF3084	0.11	+0.6
3,149,947	-		GFF3084	0.12	-0.4
3,149,960	+		GFF3084	0.13	+0.2
3,149,960	+		GFF3084	0.13	+1.0
3,149,960	+		GFF3084	0.13	+0.4
3,149,968	-		GFF3084	0.14	+1.4
3,149,968	-		GFF3084	0.14	+0.4
3,149,975	+		GFF3084	0.15	+1.2
3,149,987	+		GFF3084	0.17	-1.9
3,149,992	+		GFF3084	0.18	-0.2
3,150,047	-		GFF3084	0.25	+0.9
3,150,047	-		GFF3084	0.25	-2.7
3,150,049	+		GFF3084	0.25	+0.3
3,150,049	+		GFF3084	0.25	-0.6
3,150,049	+		GFF3084	0.25	-0.1
3,150,057	-		GFF3084	0.26	+0.7
3,150,058	-		GFF3084	0.26	+0.4
3,150,064	+		GFF3084	0.27	+0.2
3,150,085	+		GFF3084	0.30	+0.5
3,150,085	+		GFF3084	0.30	-0.9
3,150,085	+		GFF3084	0.30	-0.4
3,150,085	+		GFF3084	0.30	-0.4
3,150,085	+		GFF3084	0.30	+0.6
3,150,085	+		GFF3084	0.30	-0.1
3,150,085	+		GFF3084	0.30	+0.1
3,150,093	-		GFF3084	0.31	-1.8
3,150,093	-		GFF3084	0.31	-0.2
3,150,093	-		GFF3084	0.31	+0.7
3,150,103	-		GFF3084	0.32	-1.1
3,150,119	+		GFF3084	0.35	-0.9
3,150,127	-		GFF3084	0.36	+1.4
3,150,132	-		GFF3084	0.36	-0.2
3,150,136	+		GFF3084	0.37	-0.2
3,150,142	+		GFF3084	0.38	-0.0
3,150,175	-		GFF3084	0.42	+0.2
3,150,180	+		GFF3084	0.43	+0.3
3,150,180	+		GFF3084	0.43	-0.5
3,150,180	+		GFF3084	0.43	-0.6
3,150,180	+		GFF3084	0.43	-1.3
3,150,180	+		GFF3084	0.43	+1.2
3,150,180	+		GFF3084	0.43	+0.8
3,150,180	+		GFF3084	0.43	+1.6
3,150,188	-		GFF3084	0.44	-0.1
3,150,188	-		GFF3084	0.44	-1.4
3,150,188	-		GFF3084	0.44	-0.5
3,150,188	-		GFF3084	0.44	-1.3
3,150,188	-		GFF3084	0.44	-0.3
3,150,188	-		GFF3084	0.44	-2.7
3,150,188	-		GFF3084	0.44	-0.2
3,150,188	-		GFF3084	0.44	-1.0
3,150,188	-		GFF3084	0.44	+1.4
3,150,188	-		GFF3084	0.44	-0.8
3,150,188	-		GFF3084	0.44	+0.4
3,150,188	-		GFF3084	0.44	-2.5
3,150,207	+		GFF3084	0.46	+0.8
3,150,224	+		GFF3084	0.49	-0.7
3,150,229	-		GFF3084	0.49	+0.8
3,150,243	-		GFF3084	0.51	-0.6
3,150,246	+		GFF3084	0.52	-0.4
3,150,269	+		GFF3084	0.55	-1.3
3,150,269	+		GFF3084	0.55	+1.1
3,150,277	-		GFF3084	0.56	+0.4
3,150,277	-		GFF3084	0.56	-0.1
3,150,282	+		GFF3084	0.56	-0.6
3,150,290	-		GFF3084	0.57	-0.3
3,150,305	+		GFF3084	0.59	-0.5
3,150,305	+		GFF3084	0.59	-3.2
3,150,348	+		GFF3084	0.65	-0.2
3,150,360	+		GFF3084	0.67	+0.7
3,150,362	+		GFF3084	0.67	+0.6
3,150,368	-		GFF3084	0.68	+0.5
3,150,376	-		GFF3084	0.69	-1.0
3,150,394	+		GFF3084	0.71	-0.2
3,150,399	+		GFF3084	0.72	-1.5
3,150,399	+		GFF3084	0.72	-2.1
3,150,404	+		GFF3084	0.73	+0.4
3,150,407	-		GFF3084	0.73	+0.6
3,150,407	-		GFF3084	0.73	-1.0
3,150,411	+		GFF3084	0.74	+0.1
3,150,411	+		GFF3084	0.74	+0.3
3,150,412	-		GFF3084	0.74	-0.1
3,150,419	-		GFF3084	0.75	+0.1
3,150,419	-		GFF3084	0.75	+0.7
3,150,427	+		GFF3084	0.76	+0.6
3,150,427	+		GFF3084	0.76	+0.5
3,150,444	-		GFF3084	0.78	+0.4
3,150,444	-		GFF3084	0.78	-1.6
3,150,479	-		GFF3084	0.83	-0.1
3,150,507	+		GFF3084	0.86	-1.5
3,150,512	+		GFF3084	0.87	+0.5
3,150,586	-				+0.9
3,150,664	+				+1.0
3,150,664	+				-1.8
3,150,670	+				+0.1
3,150,672	-				+0.2
3,150,672	-				+0.7
3,150,672	-				+0.5
3,150,683	+				+0.1
3,150,683	+				-0.5
3,150,683	+				-0.3
3,150,691	-				+0.0
3,150,691	-				+0.2
3,150,691	-				-0.5
3,150,691	-				-1.6
3,150,691	-				-0.4
3,150,731	+				+0.8
3,150,731	+				-1.8
3,150,750	-				-1.3
3,150,766	+				+0.1
3,150,768	-				+0.4
3,150,769	-				-0.2
3,150,770	+				+1.0
3,150,770	+				+0.7
3,150,770	+				-0.3
3,150,770	+				-0.6
3,150,770	+				-1.0
3,150,770	+				-0.4
3,150,778	-				-0.6
3,150,778	-				-1.6
3,150,778	-				-1.5
3,150,778	-				+0.6
3,150,778	-				+0.6
3,150,780	-				+0.3
3,150,788	+				+0.5
3,150,793	+		GFF3085	0.10	-1.2
3,150,796	-		GFF3085	0.12	+0.0
3,150,796	-		GFF3085	0.12	-0.3
3,150,796	-		GFF3085	0.12	-0.9
3,150,802	+		GFF3085	0.14	-1.8
3,150,807	+		GFF3085	0.17	+0.1
3,150,807	+		GFF3085	0.17	+0.0
3,150,807	+		GFF3085	0.17	+1.3
3,150,807	+		GFF3085	0.17	-0.3
3,150,807	+		GFF3085	0.17	+0.0
3,150,807	+		GFF3085	0.17	+0.2
3,150,807	+		GFF3085	0.17	-1.3
3,150,807	+		GFF3085	0.17	+0.1
3,150,815	-		GFF3085	0.20	-0.1
3,150,815	-		GFF3085	0.20	-1.5
3,150,815	-		GFF3085	0.20	+0.1
3,150,815	-		GFF3085	0.20	+1.2
3,150,815	-		GFF3085	0.20	+0.3
3,150,815	-		GFF3085	0.20	-1.6
3,150,815	-		GFF3085	0.20	+0.8
3,150,815	-		GFF3085	0.20	-1.1
3,150,820	-		GFF3085	0.23	-0.6
3,150,849	-		GFF3085	0.36	+0.6
3,150,867	+		GFF3085	0.44	-1.7
3,150,880	+		GFF3085	0.50	-0.8
3,150,880	+		GFF3085	0.50	-0.0
3,150,883	-		GFF3085	0.51	-0.6
3,150,896	+		GFF3085	0.57	-0.4
3,150,971	-				+0.5
3,150,975	-				-1.4
3,150,985	+				-0.8
3,150,985	+				-1.7
3,150,985	+				-1.0
3,150,985	+				-1.1
3,150,993	-				-2.3
3,150,993	-				+0.3
3,151,009	+				-0.7
3,151,020	+				-1.2
3,151,026	-				-0.6
3,151,046	+				-0.1
3,151,047	+				-1.1
3,151,047	+				+0.1
3,151,112	+		GFF3086	0.14	+0.2
3,151,135	+		GFF3086	0.16	-0.1
3,151,144	-		GFF3086	0.17	-2.2
3,151,144	-		GFF3086	0.17	-0.5
3,151,176	-		GFF3086	0.21	+0.7
3,151,199	+		GFF3086	0.23	+0.3
3,151,199	+		GFF3086	0.23	-0.6
3,151,199	+		GFF3086	0.23	+2.1
3,151,209	+		GFF3086	0.24	+0.1
3,151,217	-		GFF3086	0.25	+0.5
3,151,257	+		GFF3086	0.30	-0.3
3,151,258	+		GFF3086	0.30	-0.3
3,151,258	+		GFF3086	0.30	-0.5
3,151,258	+		GFF3086	0.30	-1.6
3,151,258	+		GFF3086	0.30	-0.4
3,151,263	+		GFF3086	0.30	+0.4
3,151,264	-		GFF3086	0.31	-0.5
3,151,266	-		GFF3086	0.31	-1.1
3,151,266	-		GFF3086	0.31	+0.7
3,151,266	-		GFF3086	0.31	-1.9
3,151,266	-		GFF3086	0.31	-0.4
3,151,266	-		GFF3086	0.31	+0.8
3,151,266	-		GFF3086	0.31	+0.4
3,151,273	-		GFF3086	0.32	+0.2
3,151,281	+		GFF3086	0.32	-0.2
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3,151,326	+		GFF3086	0.37	-1.5
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3,151,331	+		GFF3086	0.38	-0.3
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