Strain Fitness in Sphingobium sp. HT1-2 around GFF3071

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,140,874	+		GFF3069	0.81	+0.0
3,140,874	+		GFF3069	0.81	-1.5
3,140,882	-		GFF3069	0.83	-0.8
3,140,898	-		GFF3069	0.85	-0.7
3,140,908	-		GFF3069	0.86	-0.7
3,140,908	-		GFF3069	0.86	+1.4
3,140,915	+		GFF3069	0.87	-0.7
3,140,931	+		GFF3069	0.90	-0.3
3,140,931	-		GFF3069	0.90	-0.0
3,140,937	+				+0.1
3,140,939	-				-0.7
3,140,940	-				-1.0
3,140,943	+				-0.2
3,140,945	-				-0.6
3,140,961	+				-0.2
3,140,962	+				-0.5
3,140,962	+				+0.5
3,140,966	+				-1.9
3,140,969	-				-1.5
3,140,974	-				-0.1
3,140,983	-				-0.6
3,140,989	+				-0.6
3,140,989	+				-1.7
3,140,989	+				+0.2
3,140,989	+				-0.3
3,140,989	+				-2.6
3,140,989	+				+0.0
3,140,996	-				+0.2
3,140,997	-				-1.8
3,140,997	-				-1.3
3,140,997	-				+0.9
3,141,009	+				-1.0
3,141,009	+				-0.9
3,141,024	-				-2.3
3,141,024	-				+0.2
3,141,027	+				-0.1
3,141,027	+				+0.1
3,141,051	+				-1.8
3,141,052	+				-1.2
3,141,082	+				-2.4
3,141,082	+				+0.8
3,141,100	+				+0.7
3,141,101	-				+0.4
3,141,116	+				-1.5
3,141,173	+		GFF3070	0.18	-0.2
3,141,173	+		GFF3070	0.18	-0.5
3,141,176	-		GFF3070	0.18	-1.5
3,141,178	+		GFF3070	0.18	-1.9
3,141,181	-		GFF3070	0.19	-1.0
3,141,183	+		GFF3070	0.19	+0.5
3,141,191	-		GFF3070	0.20	+0.4
3,141,195	+		GFF3070	0.21	-0.3
3,141,254	+		GFF3070	0.29	+2.1
3,141,255	+		GFF3070	0.29	-0.2
3,141,278	+		GFF3070	0.32	+1.7
3,141,286	-		GFF3070	0.33	-1.2
3,141,286	-		GFF3070	0.33	-1.2
3,141,286	-		GFF3070	0.33	+0.4
3,141,289	+		GFF3070	0.34	-0.8
3,141,289	+		GFF3070	0.34	-1.2
3,141,289	+		GFF3070	0.34	-1.2
3,141,289	+		GFF3070	0.34	+0.7
3,141,289	+		GFF3070	0.34	-0.3
3,141,289	+		GFF3070	0.34	-1.6
3,141,289	+		GFF3070	0.34	+0.1
3,141,289	+		GFF3070	0.34	-1.0
3,141,289	+		GFF3070	0.34	+0.1
3,141,289	+		GFF3070	0.34	-1.1
3,141,289	+		GFF3070	0.34	+1.5
3,141,297	-		GFF3070	0.35	-2.8
3,141,297	-		GFF3070	0.35	-0.6
3,141,297	-		GFF3070	0.35	-2.1
3,141,297	-		GFF3070	0.35	-0.5
3,141,297	-		GFF3070	0.35	-0.3
3,141,297	-		GFF3070	0.35	-2.5
3,141,297	-		GFF3070	0.35	+0.5
3,141,297	-		GFF3070	0.35	+0.2
3,141,297	-		GFF3070	0.35	+0.2
3,141,308	+		GFF3070	0.36	+1.6
3,141,316	-		GFF3070	0.37	-1.0
3,141,332	+		GFF3070	0.40	-0.5
3,141,335	-		GFF3070	0.40	-0.8
3,141,344	+		GFF3070	0.41	-0.1
3,141,376	+		GFF3070	0.46	+0.8
3,141,378	-		GFF3070	0.46	+1.0
3,141,378	-		GFF3070	0.46	+0.4
3,141,378	-		GFF3070	0.46	-1.7
3,141,380	+		GFF3070	0.46	+0.8
3,141,380	+		GFF3070	0.46	-1.6
3,141,383	-		GFF3070	0.47	-0.0
3,141,386	+		GFF3070	0.47	-0.1
3,141,388	-		GFF3070	0.47	-0.5
3,141,394	-		GFF3070	0.48	-0.7
3,141,394	-		GFF3070	0.48	-0.1
3,141,427	+		GFF3070	0.53	-0.3
3,141,435	-		GFF3070	0.54	-1.7
3,141,435	-		GFF3070	0.54	-0.9
3,141,450	+		GFF3070	0.56	+0.5
3,141,453	-		GFF3070	0.56	+0.9
3,141,455	+		GFF3070	0.56	+0.2
3,141,455	+		GFF3070	0.56	-0.5
3,141,458	-		GFF3070	0.57	-1.0
3,141,458	-		GFF3070	0.57	+0.9
3,141,458	-		GFF3070	0.57	+1.1
3,141,464	+		GFF3070	0.58	-0.7
3,141,468	+		GFF3070	0.58	+0.5
3,141,594	-		GFF3070	0.76	+0.4
3,141,604	-		GFF3070	0.77	-0.1
3,141,634	-		GFF3070	0.81	-2.8
3,141,640	+		GFF3070	0.82	-0.5
3,141,640	+		GFF3070	0.82	+0.2
3,141,640	+		GFF3070	0.82	-0.8
3,141,648	-		GFF3070	0.83	-0.7
3,141,648	-		GFF3070	0.83	-1.6
3,141,648	-		GFF3070	0.83	-1.9
3,141,648	-		GFF3070	0.83	+1.6
3,141,650	+		GFF3070	0.83	-0.8
3,141,650	+		GFF3070	0.83	-0.6
3,141,650	+		GFF3070	0.83	+0.6
3,141,650	+		GFF3070	0.83	-0.6
3,141,650	+		GFF3070	0.83	-1.8
3,141,650	+		GFF3070	0.83	-1.5
3,141,650	+		GFF3070	0.83	-1.1
3,141,650	+		GFF3070	0.83	-1.3
3,141,658	-		GFF3070	0.84	-0.6
3,141,658	-		GFF3070	0.84	+0.0
3,141,658	-		GFF3070	0.84	+0.8
3,141,658	-		GFF3070	0.84	+1.0
3,141,658	-		GFF3070	0.84	+0.4
3,141,658	-		GFF3070	0.84	+0.7
3,141,668	-		GFF3070	0.86	-0.9
3,141,673	-		GFF3070	0.87	-0.2
3,141,685	-		GFF3070	0.88	+0.6
3,141,685	-		GFF3070	0.88	-1.7
3,141,702	-				+0.7
3,141,712	-				-0.4
3,141,734	-				-0.0
3,141,771	+				-0.8
3,141,772	+				+0.1
3,141,772	+				+1.1
3,141,776	+				+0.2
3,141,779	-				+0.4
3,141,784	-				+0.1
3,141,811	+				+0.3
3,141,821	-				-0.7
3,141,852	+				+0.2
3,141,852	-				-1.6
3,141,864	+				-0.2
3,141,875	-				-0.1
3,141,880	-				-1.0
3,142,582	-				+1.7
3,142,582	-				+0.7
3,142,582	-				+0.0
3,142,582	-				+0.9
3,142,582	-				-0.8
3,142,584	+				+0.0
3,142,584	+				+0.5
3,142,592	-		GFF3072	0.12	-0.5
3,142,596	+		GFF3072	0.14	+0.6
3,142,615	+		GFF3072	0.21	+0.2
3,142,621	-		GFF3072	0.24	+0.3
3,142,621	-		GFF3072	0.24	+0.7
3,142,621	-		GFF3072	0.24	-0.9
3,142,621	-		GFF3072	0.24	-0.3
3,142,623	+		GFF3072	0.24	+1.1
3,142,634	+		GFF3072	0.29	-0.2
3,142,634	+		GFF3072	0.29	-2.3
3,142,634	+		GFF3072	0.29	+0.4
3,142,642	-		GFF3072	0.32	-0.0
3,142,652	+		GFF3072	0.36	+0.5
3,142,652	+		GFF3072	0.36	-1.1
3,142,652	+		GFF3072	0.36	+0.7
3,142,666	+		GFF3072	0.41	-0.1
3,142,675	-		GFF3072	0.45	-0.1
3,142,679	-		GFF3072	0.46	+1.0
3,142,732	-		GFF3072	0.67	-1.9
3,142,746	-		GFF3072	0.73	-1.8
3,142,751	-		GFF3072	0.75	+0.1
3,142,772	+		GFF3072	0.83	-0.4
3,142,784	-		GFF3072	0.87	+1.1
3,142,819	+				-0.2
3,142,856	-				+1.4
3,142,872	+				-1.3
3,142,873	+				-0.6
3,142,881	-		GFF3073	0.10	-1.1
3,142,892	+		GFF3073	0.12	-1.9
3,142,892	+		GFF3073	0.12	-0.1
3,142,892	+		GFF3073	0.12	-1.9
3,142,892	+		GFF3073	0.12	+0.2
3,142,900	-		GFF3073	0.13	+0.8
3,142,900	-		GFF3073	0.13	-2.5
3,142,900	-		GFF3073	0.13	+0.8
3,142,900	-		GFF3073	0.13	-0.6
3,142,900	-		GFF3073	0.13	+0.1
3,142,900	-		GFF3073	0.13	+1.5
3,142,900	-		GFF3073	0.13	+0.3
3,142,900	-		GFF3073	0.13	-1.0
3,142,900	-		GFF3073	0.13	+0.3
3,142,900	-		GFF3073	0.13	+1.3
3,142,900	-		GFF3073	0.13	-0.6
3,142,900	-		GFF3073	0.13	-0.2
3,142,902	+		GFF3073	0.14	-1.2
3,142,905	-		GFF3073	0.14	+1.2
3,142,910	-		GFF3073	0.15	-0.6
3,142,934	-		GFF3073	0.18	-0.6
3,142,935	+		GFF3073	0.19	+0.7
3,142,940	+		GFF3073	0.19	+1.4
3,142,969	-		GFF3073	0.24	+0.9
3,142,969	-		GFF3073	0.24	-0.4
3,142,996	+		GFF3073	0.28	-1.7
3,143,022	-		GFF3073	0.32	+0.4
3,143,024	+		GFF3073	0.32	-0.8
3,143,026	+		GFF3073	0.32	+1.2
3,143,032	+		GFF3073	0.33	-0.2
3,143,038	+		GFF3073	0.34	-0.3
3,143,040	-		GFF3073	0.35	-0.5
3,143,062	-		GFF3073	0.38	-0.5
3,143,062	-		GFF3073	0.38	+0.1
3,143,064	+		GFF3073	0.38	-0.2
3,143,064	+		GFF3073	0.38	-1.5
3,143,064	+		GFF3073	0.38	+0.4
3,143,070	-		GFF3073	0.39	-0.0
3,143,099	+		GFF3073	0.43	+0.0
3,143,109	+		GFF3073	0.45	-1.2
3,143,109	-		GFF3073	0.45	+0.2
3,143,111	+		GFF3073	0.45	-1.5
3,143,111	+		GFF3073	0.45	+0.0
3,143,111	+		GFF3073	0.45	-0.8
3,143,111	+		GFF3073	0.45	-0.9
3,143,111	+		GFF3073	0.45	-1.6
3,143,119	-		GFF3073	0.47	+0.8
3,143,119	-		GFF3073	0.47	-0.5
3,143,119	-		GFF3073	0.47	-1.8
3,143,119	-		GFF3073	0.47	+0.4
3,143,157	+		GFF3073	0.52	-1.4
3,143,183	+		GFF3073	0.56	-1.5
3,143,192	+		GFF3073	0.58	+0.6
3,143,197	+		GFF3073	0.58	-0.5
3,143,200	-		GFF3073	0.59	+1.2
3,143,202	+		GFF3073	0.59	-0.6
3,143,205	-		GFF3073	0.60	-1.1
3,143,224	-		GFF3073	0.62	-3.1
3,143,229	+		GFF3073	0.63	-1.5
3,143,232	-		GFF3073	0.64	-0.7
3,143,234	+		GFF3073	0.64	+0.8
3,143,237	-		GFF3073	0.64	-1.7
3,143,237	-		GFF3073	0.64	-0.5
3,143,238	+		GFF3073	0.65	-0.8
3,143,242	-		GFF3073	0.65	+1.3
3,143,242	-		GFF3073	0.65	-0.3
3,143,242	-		GFF3073	0.65	-0.8
3,143,244	-		GFF3073	0.65	-0.7
3,143,248	+		GFF3073	0.66	+0.2
3,143,278	-		GFF3073	0.71	+0.5
3,143,285	+		GFF3073	0.72	-0.5
3,143,285	+		GFF3073	0.72	-2.1
3,143,302	+		GFF3073	0.74	-2.7
3,143,327	-		GFF3073	0.78	-1.0
3,143,332	-		GFF3073	0.79	+0.6
3,143,366	+		GFF3073	0.84	+0.3
3,143,388	+		GFF3073	0.87	-1.6
3,143,389	+		GFF3073	0.87	+0.2
3,143,389	+		GFF3073	0.87	+0.6
3,143,396	-		GFF3073	0.88	+0.0
3,143,396	-		GFF3073	0.88	+0.5
3,143,396	-		GFF3073	0.88	-0.4
3,143,422	+				-1.0
3,143,423	-				+0.7
3,143,430	-				+1.6
3,143,461	-				+0.8
3,143,467	+				-0.2
3,143,469	-				+0.4
3,143,475	-				-1.1
3,143,527	+				-1.7
3,143,527	+				-0.1