Strain Fitness in Sphingobium sp. HT1-2 around GFF3042

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,116,905	-		GFF3041	0.15	+0.2
3,116,907	+		GFF3041	0.15	+0.5
3,116,907	+		GFF3041	0.15	+0.3
3,116,907	+		GFF3041	0.15	-0.1
3,116,907	+		GFF3041	0.15	-1.6
3,116,915	-		GFF3041	0.16	-1.2
3,116,917	-		GFF3041	0.16	-0.1
3,116,920	-		GFF3041	0.16	+0.1
3,116,936	-		GFF3041	0.18	-0.2
3,116,944	+		GFF3041	0.19	-0.4
3,116,944	+		GFF3041	0.19	-0.1
3,116,944	+		GFF3041	0.19	-0.2
3,116,949	+		GFF3041	0.19	-0.3
3,116,949	+		GFF3041	0.19	-1.0
3,116,952	-		GFF3041	0.20	-0.9
3,116,957	-		GFF3041	0.20	-1.8
3,116,985	+		GFF3041	0.23	-2.4
3,116,985	+		GFF3041	0.23	-0.0
3,116,993	-		GFF3041	0.24	-0.1
3,116,993	-		GFF3041	0.24	-1.1
3,117,003	-		GFF3041	0.25	-1.0
3,117,003	-		GFF3041	0.25	-1.6
3,117,007	+		GFF3041	0.26	-2.0
3,117,007	-		GFF3041	0.26	-1.3
3,117,025	-		GFF3041	0.27	+0.5
3,117,101	-		GFF3041	0.36	-0.2
3,117,103	+		GFF3041	0.36	-1.8
3,117,103	+		GFF3041	0.36	-1.0
3,117,169	+		GFF3041	0.43	-0.1
3,117,193	-		GFF3041	0.45	+1.5
3,117,207	-		GFF3041	0.47	+1.5
3,117,226	+		GFF3041	0.49	+0.7
3,117,226	+		GFF3041	0.49	+0.2
3,117,226	+		GFF3041	0.49	-2.5
3,117,226	+		GFF3041	0.49	-0.6
3,117,234	-		GFF3041	0.50	+0.3
3,117,237	+		GFF3041	0.50	-0.6
3,117,237	+		GFF3041	0.50	-0.5
3,117,237	+		GFF3041	0.50	-1.0
3,117,237	+		GFF3041	0.50	+0.7
3,117,237	+		GFF3041	0.50	+0.9
3,117,244	+		GFF3041	0.51	-0.9
3,117,245	-		GFF3041	0.51	-0.3
3,117,245	-		GFF3041	0.51	-0.5
3,117,245	-		GFF3041	0.51	-1.3
3,117,245	-		GFF3041	0.51	-1.6
3,117,245	-		GFF3041	0.51	+0.6
3,117,251	-		GFF3041	0.51	+0.6
3,117,252	-		GFF3041	0.52	-0.9
3,117,252	-		GFF3041	0.52	-1.3
3,117,333	-		GFF3041	0.60	+0.4
3,117,353	-		GFF3041	0.62	+0.2
3,117,395	-		GFF3041	0.67	+0.0
3,117,396	-		GFF3041	0.67	+0.1
3,117,415	-		GFF3041	0.69	-0.6
3,117,418	+		GFF3041	0.69	+0.8
3,117,438	+		GFF3041	0.71	+0.2
3,117,507	+		GFF3041	0.79	-0.6
3,117,507	+		GFF3041	0.79	+0.9
3,117,522	+		GFF3041	0.80	-0.6
3,117,530	-		GFF3041	0.81	+0.5
3,117,530	-		GFF3041	0.81	-1.1
3,117,530	-		GFF3041	0.81	-0.2
3,117,530	-		GFF3041	0.81	-0.5
3,117,539	+		GFF3041	0.82	-1.0
3,117,541	+		GFF3041	0.82	-2.0
3,117,541	+		GFF3041	0.82	-0.4
3,117,541	+		GFF3041	0.82	-1.5
3,117,541	+		GFF3041	0.82	-0.8
3,117,546	+		GFF3041	0.83	-0.1
3,117,549	-		GFF3041	0.83	+0.0
3,117,549	-		GFF3041	0.83	-1.5
3,117,549	-		GFF3041	0.83	-1.0
3,117,549	-		GFF3041	0.83	+0.7
3,117,549	-		GFF3041	0.83	+1.1
3,117,549	-		GFF3041	0.83	-2.0
3,117,549	-		GFF3041	0.83	-0.6
3,117,565	+		GFF3041	0.85	+0.5
3,117,573	-		GFF3041	0.86	-1.1
3,117,573	-		GFF3041	0.86	+0.6
3,117,575	+		GFF3041	0.86	-0.3
3,117,575	+		GFF3041	0.86	-0.7
3,117,575	+		GFF3041	0.86	-0.8
3,117,583	-		GFF3041	0.87	-3.1
3,117,583	-		GFF3041	0.87	-0.2
3,117,583	-		GFF3041	0.87	-0.3
3,117,583	-		GFF3041	0.87	-1.1
3,117,590	-		GFF3041	0.87	+0.5
3,117,634	+				-2.0
3,117,638	-				-2.5
3,117,642	-				-1.7
3,117,676	+				-1.0
3,117,676	+				+1.2
3,117,681	+				-0.6
3,117,681	+				-0.6
3,117,681	+				-1.1
3,117,681	+				+0.7
3,117,681	+				-0.5
3,117,681	+				-1.6
3,117,684	+				+0.5
3,117,684	-				-2.0
3,117,684	-				-0.0
3,117,684	-				-0.5
3,117,684	-				+0.1
3,117,684	-				-0.8
3,117,684	-				-1.2
3,117,689	-				-1.6
3,117,689	-				-1.6
3,117,689	-				-1.0
3,117,689	-				+0.1
3,117,689	-				-0.9
3,117,689	-				+1.6
3,117,689	-				-0.0
3,117,700	-				-0.3
3,117,701	+				-0.1
3,117,710	-				-0.3
3,117,710	-				+1.2
3,117,710	-				+1.3
3,117,710	-				-0.1
3,117,710	-				+0.3
3,117,715	-				+1.2
3,117,799	-				-1.0
3,117,847	+				+0.0
3,117,880	+				-1.1
3,117,880	+				+1.0
3,117,880	+				-0.3
3,117,880	+				+1.3
3,117,880	+				-2.0
3,117,880	+				-0.0
3,117,880	+				+0.2
3,117,880	+				+0.2
3,117,880	+				-0.5
3,117,885	+				-0.7
3,117,888	-				-1.3
3,117,888	-				+0.4
3,117,888	-				-1.3
3,117,888	-				-0.3
3,117,927	+				-1.0
3,117,927	+				-0.2
3,117,942	+				-1.7
3,117,947	+				+0.8
3,117,950	-				+0.3
3,117,952	+				-0.6
3,117,952	+				-1.6
3,117,955	-				-0.0
3,117,955	-				+0.2
3,117,955	-				+0.9
3,117,957	+				-0.6
3,117,960	-				+0.3
3,117,960	-				-0.2
3,117,960	-				-0.0
3,118,023	+				-0.2
3,118,047	+				-0.2
3,118,047	+				-0.2
3,118,067	-				-0.0
3,118,074	+				-0.2
3,118,084	-				-0.0
3,118,093	+				+0.5
3,118,101	-		GFF3042	0.10	+0.4
3,118,101	-		GFF3042	0.10	-1.0
3,118,105	+		GFF3042	0.10	+0.1
3,118,129	+		GFF3042	0.12	-0.6
3,118,135	+		GFF3042	0.12	-1.5
3,118,135	+		GFF3042	0.12	-0.8
3,118,135	+		GFF3042	0.12	+0.0
3,118,143	-		GFF3042	0.12	-0.2
3,118,149	-		GFF3042	0.13	+0.3
3,118,152	+		GFF3042	0.13	-1.1
3,118,160	-		GFF3042	0.13	+1.5
3,118,193	+		GFF3042	0.15	+1.1
3,118,198	+		GFF3042	0.15	-1.7
3,118,202	+		GFF3042	0.15	-2.8
3,118,202	+		GFF3042	0.15	+0.4
3,118,216	-		GFF3042	0.16	-0.8
3,118,254	-		GFF3042	0.18	-0.9
3,118,259	+		GFF3042	0.18	-0.7
3,118,260	-		GFF3042	0.18	-0.6
3,118,299	-		GFF3042	0.20	+0.2
3,118,304	+		GFF3042	0.21	-0.3
3,118,329	-		GFF3042	0.22	+1.8
3,118,337	+		GFF3042	0.22	-0.9
3,118,342	+		GFF3042	0.22	+0.9
3,118,342	+		GFF3042	0.22	-1.6
3,118,350	-		GFF3042	0.23	-0.1
3,118,379	-		GFF3042	0.24	+0.2
3,118,413	+		GFF3042	0.26	+0.4
3,118,461	-		GFF3042	0.29	+0.0
3,118,512	-		GFF3042	0.31	+0.2
3,118,517	-		GFF3042	0.31	+1.4
3,118,522	+		GFF3042	0.32	+1.4
3,118,532	+		GFF3042	0.32	-1.3
3,118,540	-		GFF3042	0.33	-0.1
3,118,561	+		GFF3042	0.34	+0.0
3,118,583	-		GFF3042	0.35	-1.1
3,118,600	+		GFF3042	0.36	-1.1
3,118,600	+		GFF3042	0.36	-0.3
3,118,608	-		GFF3042	0.36	-0.3
3,118,608	-		GFF3042	0.36	+0.5
3,118,612	+		GFF3042	0.36	-1.1
3,118,615	-		GFF3042	0.36	-0.5
3,118,615	-		GFF3042	0.36	-2.0
3,118,625	+		GFF3042	0.37	-1.5
3,118,629	+		GFF3042	0.37	+0.9
3,118,629	+		GFF3042	0.37	+0.1
3,118,629	+		GFF3042	0.37	-1.1
3,118,631	+		GFF3042	0.37	-0.2
3,118,653	-		GFF3042	0.38	-0.6
3,118,683	+		GFF3042	0.40	-1.6
3,118,704	+		GFF3042	0.41	-1.9
3,118,706	+		GFF3042	0.41	+1.6
3,118,714	-		GFF3042	0.41	-0.5
3,118,736	+		GFF3042	0.43	-0.1
3,118,769	+		GFF3042	0.44	+1.5
3,118,781	-		GFF3042	0.45	-0.6
3,118,781	-		GFF3042	0.45	-0.1
3,118,781	-		GFF3042	0.45	-0.2
3,118,791	-		GFF3042	0.45	-1.8
3,118,793	-		GFF3042	0.45	-1.3
3,118,852	-		GFF3042	0.48	+0.1
3,118,859	+		GFF3042	0.49	-2.6
3,118,861	+		GFF3042	0.49	-0.8
3,118,861	+		GFF3042	0.49	-1.6
3,118,861	+		GFF3042	0.49	-0.3
3,118,869	-		GFF3042	0.49	-0.9
3,118,869	-		GFF3042	0.49	-0.1
3,118,869	-		GFF3042	0.49	-0.3
3,118,870	-		GFF3042	0.49	+0.6
3,118,870	-		GFF3042	0.49	-1.0
3,118,881	-		GFF3042	0.50	+1.4
3,118,883	+		GFF3042	0.50	+0.1
3,118,891	-		GFF3042	0.50	-0.6
3,118,918	+		GFF3042	0.52	-1.6
3,118,918	+		GFF3042	0.52	-0.3
3,118,923	+		GFF3042	0.52	+0.1
3,118,927	+		GFF3042	0.52	+1.4
3,118,985	-		GFF3042	0.55	-0.4
3,118,995	-		GFF3042	0.56	-0.5
3,118,995	-		GFF3042	0.56	+0.3
3,118,995	-		GFF3042	0.56	-0.3
3,118,995	-		GFF3042	0.56	-0.3
3,119,029	+		GFF3042	0.57	+0.8
3,119,029	+		GFF3042	0.57	-0.6
3,119,042	-		GFF3042	0.58	+1.0
3,119,042	-		GFF3042	0.58	+0.3
3,119,069	+		GFF3042	0.59	-0.3
3,119,081	+		GFF3042	0.60	+0.2
3,119,081	+		GFF3042	0.60	-0.3
3,119,082	+		GFF3042	0.60	-0.3
3,119,089	-		GFF3042	0.61	+0.1
3,119,089	-		GFF3042	0.61	+0.2
3,119,091	+		GFF3042	0.61	-0.8
3,119,098	+		GFF3042	0.61	-0.1
3,119,098	+		GFF3042	0.61	-0.2
3,119,104	-		GFF3042	0.61	-0.1
3,119,106	+		GFF3042	0.61	-2.0
3,119,106	+		GFF3042	0.61	+0.0
3,119,106	+		GFF3042	0.61	+0.4
3,119,106	-		GFF3042	0.61	-1.1
3,119,106	-		GFF3042	0.61	+0.8
3,119,106	-		GFF3042	0.61	-0.6
3,119,106	-		GFF3042	0.61	-2.0
3,119,113	+		GFF3042	0.62	-0.8
3,119,114	-		GFF3042	0.62	-0.9
3,119,114	-		GFF3042	0.62	+0.0
3,119,114	-		GFF3042	0.62	+0.9
3,119,114	-		GFF3042	0.62	+1.0
3,119,116	-		GFF3042	0.62	-0.9
3,119,154	-		GFF3042	0.64	+0.1
3,119,172	-		GFF3042	0.65	+0.4
3,119,196	+		GFF3042	0.66	-0.0
3,119,196	+		GFF3042	0.66	-1.1
3,119,196	+		GFF3042	0.66	+1.1
3,119,196	+		GFF3042	0.66	-2.6
3,119,199	-		GFF3042	0.66	-1.3
3,119,203	-		GFF3042	0.66	-1.4
3,119,204	-		GFF3042	0.66	+1.2
3,119,220	+		GFF3042	0.67	+0.2
3,119,220	+		GFF3042	0.67	-0.8
3,119,230	-		GFF3042	0.68	-0.5
3,119,259	-		GFF3042	0.69	+0.4
3,119,268	-		GFF3042	0.70	+0.6
3,119,271	+		GFF3042	0.70	+0.4
3,119,271	+		GFF3042	0.70	-1.2
3,119,271	+		GFF3042	0.70	+0.7
3,119,271	+		GFF3042	0.70	+0.7
3,119,271	+		GFF3042	0.70	+0.6
3,119,271	+		GFF3042	0.70	+1.8
3,119,271	+		GFF3042	0.70	-1.6
3,119,271	+		GFF3042	0.70	-0.4
3,119,271	+		GFF3042	0.70	+1.0
3,119,271	+		GFF3042	0.70	-0.5
3,119,271	+		GFF3042	0.70	-1.2
3,119,279	-		GFF3042	0.70	-0.4
3,119,279	-		GFF3042	0.70	-1.9
3,119,279	-		GFF3042	0.70	-0.5
3,119,279	-		GFF3042	0.70	+0.1
3,119,279	-		GFF3042	0.70	-0.6
3,119,279	-		GFF3042	0.70	-0.1
3,119,279	-		GFF3042	0.70	-0.6
3,119,292	+		GFF3042	0.71	+1.4
3,119,313	+		GFF3042	0.72	+0.0
3,119,313	+		GFF3042	0.72	+1.3
3,119,321	-		GFF3042	0.72	-2.0
3,119,321	-		GFF3042	0.72	-0.6
3,119,346	+		GFF3042	0.74	+0.3
3,119,346	+		GFF3042	0.74	+0.1
3,119,346	+		GFF3042	0.74	+0.6
3,119,354	-		GFF3042	0.74	+0.8
3,119,377	-		GFF3042	0.75	-1.2
3,119,377	-		GFF3042	0.75	-1.2
3,119,395	+		GFF3042	0.76	-0.4
3,119,401	-		GFF3042	0.76	-1.1
3,119,424	-		GFF3042	0.78	-0.5
3,119,438	+		GFF3042	0.78	+0.5
3,119,447	-		GFF3042	0.79	-1.7
3,119,454	+		GFF3042	0.79	+0.5
3,119,460	-		GFF3042	0.79	-0.7
3,119,475	+		GFF3042	0.80	-1.9
3,119,480	+		GFF3042	0.80	-1.5
3,119,480	+		GFF3042	0.80	-0.5
3,119,480	+		GFF3042	0.80	-1.0
3,119,480	+		GFF3042	0.80	-0.8
3,119,482	+		GFF3042	0.81	-0.6
3,119,482	+		GFF3042	0.81	-0.3
3,119,488	-		GFF3042	0.81	-1.3
3,119,490	-		GFF3042	0.81	+0.2
3,119,495	+		GFF3042	0.81	+0.5
3,119,503	+		GFF3042	0.82	-0.1
3,119,503	-		GFF3042	0.82	-0.2
3,119,503	-		GFF3042	0.82	-1.6
3,119,521	+		GFF3042	0.82	+0.0
3,119,531	+		GFF3042	0.83	-0.3
3,119,551	+		GFF3042	0.84	-0.5
3,119,552	-		GFF3042	0.84	-1.1
3,119,567	-		GFF3042	0.85	+1.1
3,119,577	+		GFF3042	0.85	+1.4
3,119,577	+		GFF3042	0.85	-0.4
3,119,577	-		GFF3042	0.85	-1.3
3,119,582	+		GFF3042	0.86	-0.1
3,119,590	-		GFF3042	0.86	+0.9
3,119,592	+		GFF3042	0.86	-0.0
3,119,599	+		GFF3042	0.86	-1.6
3,119,615	+		GFF3042	0.87	-1.4
3,119,640	+		GFF3042	0.89	-0.6
3,119,658	+		GFF3042	0.89	-0.1
3,119,670	+				+0.0
3,119,675	+				-0.3
3,119,675	-				-1.6
3,119,678	-				+1.0
3,119,678	-				-0.8
3,119,712	+				-0.6
3,119,712	+				-1.3
3,119,715	-				+0.2
3,119,720	-				-0.7
3,119,720	-				+0.4
3,119,720	-				-2.3
3,119,750	-				-0.7
3,119,752	+				-0.3
3,119,769	+				+0.4
3,119,769	+				+0.8
3,119,769	+				-0.5
3,119,769	+				+0.3
3,119,769	+				-0.8
3,119,769	+				-1.6
3,119,777	-				-1.0
3,119,777	-				-1.3
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