Strain Fitness in Sphingobium sp. HT1-2 around GFF3009

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,071,859	-		GFF3007	0.49	-0.7
3,071,859	-		GFF3007	0.49	-1.7
3,071,859	-		GFF3007	0.49	-1.2
3,071,859	-		GFF3007	0.49	-1.8
3,071,859	-		GFF3007	0.49	-1.4
3,071,859	-		GFF3007	0.49	+1.4
3,071,859	-		GFF3007	0.49	-1.2
3,071,859	-		GFF3007	0.49	+1.2
3,071,859	-		GFF3007	0.49	-2.2
3,071,865	+		GFF3007	0.49	-0.3
3,071,869	+		GFF3007	0.50	+0.3
3,071,873	-		GFF3007	0.50	+0.3
3,071,877	-		GFF3007	0.50	-1.4
3,071,886	+		GFF3007	0.51	+1.5
3,071,892	+		GFF3007	0.52	-0.4
3,071,892	+		GFF3007	0.52	-0.4
3,071,892	+		GFF3007	0.52	-0.8
3,071,905	+		GFF3007	0.53	+0.1
3,071,913	-		GFF3007	0.53	-1.3
3,071,913	-		GFF3007	0.53	-0.3
3,071,914	-		GFF3007	0.53	+1.4
3,071,918	+		GFF3007	0.54	-0.2
3,071,926	-		GFF3007	0.54	-0.8
3,071,926	-		GFF3007	0.54	-1.3
3,071,930	-		GFF3007	0.55	+0.3
3,071,937	+		GFF3007	0.55	-0.6
3,071,937	+		GFF3007	0.55	-1.2
3,071,937	+		GFF3007	0.55	+0.4
3,071,937	+		GFF3007	0.55	+0.6
3,071,937	+		GFF3007	0.55	-0.6
3,071,945	-		GFF3007	0.56	+0.8
3,071,945	-		GFF3007	0.56	-0.7
3,071,945	-		GFF3007	0.56	+0.1
3,071,945	-		GFF3007	0.56	+0.3
3,071,945	-		GFF3007	0.56	+0.0
3,071,945	-		GFF3007	0.56	-1.5
3,071,945	-		GFF3007	0.56	-1.9
3,071,945	-		GFF3007	0.56	-0.0
3,071,945	-		GFF3007	0.56	+0.4
3,071,945	-		GFF3007	0.56	-2.0
3,071,945	-		GFF3007	0.56	-0.3
3,071,945	-		GFF3007	0.56	+1.1
3,071,945	-		GFF3007	0.56	-0.2
3,071,945	-		GFF3007	0.56	-1.0
3,071,945	-		GFF3007	0.56	+0.7
3,071,947	+		GFF3007	0.56	+0.5
3,071,950	-		GFF3007	0.56	-0.3
3,071,957	+		GFF3007	0.57	+0.9
3,071,964	-		GFF3007	0.58	-0.5
3,071,971	-		GFF3007	0.58	-0.6
3,071,973	-		GFF3007	0.58	+0.2
3,071,974	+		GFF3007	0.59	-2.0
3,072,008	-		GFF3007	0.61	+0.5
3,072,008	-		GFF3007	0.61	+0.1
3,072,027	-		GFF3007	0.63	-1.3
3,072,040	+		GFF3007	0.64	-0.9
3,072,040	+		GFF3007	0.64	-1.3
3,072,065	+		GFF3007	0.66	-0.4
3,072,108	-		GFF3007	0.70	-1.4
3,072,165	-		GFF3007	0.75	-0.3
3,072,179	+		GFF3007	0.76	+1.2
3,072,185	-		GFF3007	0.76	-0.1
3,072,187	-		GFF3007	0.77	-0.6
3,072,206	+		GFF3007	0.78	-0.3
3,072,212	+		GFF3007	0.79	+0.5
3,072,247	+		GFF3007	0.82	-2.2
3,072,248	-		GFF3007	0.82	-1.4
3,072,272	+		GFF3007	0.84	-0.5
3,072,272	+		GFF3007	0.84	-1.1
3,072,272	+		GFF3007	0.84	+0.6
3,072,272	+		GFF3007	0.84	-0.5
3,072,279	-		GFF3007	0.84	+0.6
3,072,280	-		GFF3007	0.84	-0.2
3,072,280	-		GFF3007	0.84	-1.1
3,072,280	-		GFF3007	0.84	+0.8
3,072,288	-		GFF3007	0.85	+0.3
3,072,296	+		GFF3007	0.86	-0.6
3,072,307	+		GFF3007	0.87	-0.2
3,072,307	+		GFF3007	0.87	-0.7
3,072,322	+		GFF3007	0.88	-0.3
3,072,322	+		GFF3007	0.88	-0.0
3,072,342	+		GFF3007	0.90	-1.2
3,072,342	+		GFF3007	0.90	-1.9
3,072,342	+		GFF3007	0.90	-2.1
3,072,343	+		GFF3007	0.90	-0.2
3,072,343	+		GFF3007	0.90	-0.2
3,072,343	+		GFF3007	0.90	-0.0
3,072,343	+		GFF3007	0.90	-0.1
3,072,343	+		GFF3007	0.90	+0.3
3,072,343	+		GFF3007	0.90	+0.4
3,072,350	-				-0.7
3,072,350	-				-0.2
3,072,351	-				-0.6
3,072,351	-				+1.0
3,072,351	-				-0.2
3,072,379	-				-2.0
3,072,382	-				+0.4
3,072,388	+				+0.0
3,072,388	+				-0.1
3,072,395	+				-0.8
3,072,395	+				+0.4
3,072,395	+				-0.1
3,072,395	+				-1.0
3,072,395	+				-1.8
3,072,395	+				-0.1
3,072,395	+				-0.6
3,072,395	+				+0.1
3,072,396	-				-1.3
3,072,396	-				-0.2
3,072,403	-				-0.4
3,072,403	-				+0.5
3,072,403	-				-0.3
3,072,403	-				-0.4
3,072,403	-				+0.3
3,072,403	-				-0.5
3,072,403	-				-1.4
3,072,403	-				-1.1
3,072,403	-				-0.1
3,072,403	-				-0.2
3,072,420	-				+0.4
3,072,420	-				-0.3
3,072,465	-				+1.4
3,072,473	+				-0.6
3,072,490	+				+0.6
3,072,490	+				-1.2
3,072,492	-				+1.3
3,072,534	+		GFF3008	0.21	-1.7
3,072,534	+		GFF3008	0.21	+0.8
3,072,538	+		GFF3008	0.23	+1.1
3,072,538	+		GFF3008	0.23	+0.2
3,072,542	-		GFF3008	0.24	+0.2
3,072,558	+		GFF3008	0.30	-0.0
3,072,563	+		GFF3008	0.32	-1.0
3,072,566	-		GFF3008	0.33	+0.2
3,072,571	-		GFF3008	0.35	+0.9
3,072,574	+		GFF3008	0.36	-0.4
3,072,582	-		GFF3008	0.39	-1.3
3,072,582	-		GFF3008	0.39	-2.2
3,072,582	-		GFF3008	0.39	-0.4
3,072,607	+		GFF3008	0.48	-0.4
3,072,607	+		GFF3008	0.48	-0.7
3,072,607	+		GFF3008	0.48	-1.5
3,072,607	+		GFF3008	0.48	-0.3
3,072,614	+		GFF3008	0.51	-1.7
3,072,616	+		GFF3008	0.51	-1.7
3,072,632	-		GFF3008	0.57	-0.7
3,072,643	+		GFF3008	0.61	+0.8
3,072,645	-		GFF3008	0.62	+0.1
3,072,669	+		GFF3008	0.71	-0.1
3,072,671	-		GFF3008	0.72	-0.3
3,072,676	+		GFF3008	0.74	+0.2
3,072,676	+		GFF3008	0.74	-0.3
3,072,677	-		GFF3008	0.74	-0.2
3,072,684	-		GFF3008	0.77	-0.1
3,072,684	-		GFF3008	0.77	+0.8
3,072,713	+		GFF3008	0.87	-1.4
3,072,735	+				-0.6
3,072,737	+				+0.5
3,072,742	+				-0.3
3,072,743	-				+0.4
3,072,746	+				-1.4
3,072,746	+				+0.6
3,072,752	+				-0.6
3,072,760	-				+0.5
3,072,829	-				-2.4
3,072,846	+				+0.7
3,072,846	+				-0.1
3,072,846	+				+0.6
3,072,854	-				+0.4
3,072,856	-				-0.3
3,072,868	+				-1.4
3,072,870	+				-0.2
3,072,876	-				+0.5
3,072,876	-				-1.8
3,072,904	-		GFF3009	0.16	-1.0
3,072,904	-		GFF3009	0.16	-1.2
3,072,904	-		GFF3009	0.16	-2.6
3,072,904	-		GFF3009	0.16	+0.7
3,072,904	-		GFF3009	0.16	-0.1
3,072,904	-		GFF3009	0.16	-1.1
3,072,904	-		GFF3009	0.16	-0.3
3,072,913	+		GFF3009	0.19	-0.0
3,072,923	+		GFF3009	0.22	-1.3
3,072,923	+		GFF3009	0.22	-0.4
3,072,923	+		GFF3009	0.22	+0.9
3,072,923	+		GFF3009	0.22	-1.2
3,072,929	-		GFF3009	0.24	+0.4
3,072,931	-		GFF3009	0.25	-0.3
3,072,945	+		GFF3009	0.29	+1.4
3,072,979	-		GFF3009	0.40	-1.0
3,072,979	-		GFF3009	0.40	-1.8
3,072,996	-		GFF3009	0.45	-0.6
3,072,999	+		GFF3009	0.46	-0.3
3,072,999	+		GFF3009	0.46	-0.3
3,073,007	-		GFF3009	0.49	-0.6
3,073,017	+		GFF3009	0.52	-0.1
3,073,023	+		GFF3009	0.54	-2.3
3,073,029	-		GFF3009	0.56	+1.7
3,073,031	-		GFF3009	0.57	+0.8
3,073,048	-		GFF3009	0.62	-0.4
3,073,057	+		GFF3009	0.65	+0.6
3,073,057	+		GFF3009	0.65	-1.8
3,073,059	+		GFF3009	0.65	-0.6
3,073,059	+		GFF3009	0.65	-0.8
3,073,065	-		GFF3009	0.67	-1.2
3,073,065	-		GFF3009	0.67	-1.5
3,073,065	-		GFF3009	0.67	+1.7
3,073,068	+		GFF3009	0.68	-0.4
3,073,073	+		GFF3009	0.70	-0.2
3,073,076	-		GFF3009	0.71	-0.4
3,073,139	-				-1.2
3,073,158	+				-0.4
3,073,158	+				-0.3
3,073,166	-				-0.4
3,073,208	-				+1.1
3,073,208	-				-1.3
3,073,230	-				+0.2
3,073,235	-				-0.5
3,073,251	+				+0.7
3,073,255	+				-0.1
3,073,263	-				-1.3
3,073,268	-				+0.8
3,073,274	+				+0.3
3,073,279	+				+0.3
3,073,283	-				+0.5
3,073,285	+				+0.6
3,073,285	+				+0.9
3,073,285	+				-1.2
3,073,285	+				-1.5
3,073,285	+				+0.4
3,073,293	-				-0.1
3,073,301	+				-0.1
3,073,310	+				-0.1
3,073,310	+				-0.5
3,073,328	+				+0.4
3,073,328	+				+0.1
3,073,328	+				-0.3
3,073,328	+				-0.1
3,073,328	+				-0.4
3,073,328	+				+0.1
3,073,328	+				-2.4
3,073,328	+				+0.2
3,073,328	+				+0.3
3,073,328	+				-2.8
3,073,328	+				+0.9
3,073,331	-				-1.9
3,073,336	-				-0.1
3,073,336	-				+0.3
3,073,336	-				+0.3
3,073,336	-				+0.1
3,073,336	-				+0.1
3,073,336	-				+0.3
3,073,336	-				+0.4
3,073,336	-				+0.3
3,073,336	-				+0.7
3,073,338	+				+1.2
3,073,338	+				-1.0
3,073,341	-				+0.9
3,073,343	+				+0.1
3,073,346	-				-0.7
3,073,346	-				-0.3
3,073,346	-				+0.1
3,073,348	+				+0.1
3,073,354	+				-0.4
3,073,356	-				+1.3
3,073,370	-				+0.2
3,073,380	-				-0.0
3,073,383	+				+1.1
3,073,391	-				+0.3
3,073,409	+				-1.6
3,073,417	-				-0.1
3,073,422	+				-0.6
3,073,440	+				-1.1
3,073,440	+				-0.9
3,073,440	+				+0.3
3,073,445	+				+1.2
3,073,445	+				-0.3
3,073,448	-		GFF3010	0.10	-0.3
3,073,460	+		GFF3010	0.11	-0.0
3,073,460	+		GFF3010	0.11	-0.4
3,073,486	+		GFF3010	0.12	-1.4
3,073,495	+		GFF3010	0.12	-0.4
3,073,519	+		GFF3010	0.13	+0.3
3,073,524	+		GFF3010	0.13	-1.5
3,073,527	-		GFF3010	0.14	-0.5
3,073,529	+		GFF3010	0.14	+0.2
3,073,537	-		GFF3010	0.14	-1.8
3,073,543	+		GFF3010	0.14	-2.0
3,073,547	-		GFF3010	0.15	+0.2
3,073,552	+		GFF3010	0.15	+2.1
3,073,565	-		GFF3010	0.15	-0.4
3,073,567	+		GFF3010	0.15	-1.6
3,073,567	+		GFF3010	0.15	+0.1
3,073,567	+		GFF3010	0.15	-1.7
3,073,625	+		GFF3010	0.18	-1.2
3,073,628	-		GFF3010	0.18	+0.4
3,073,707	-		GFF3010	0.22	-2.6
3,073,719	-		GFF3010	0.22	+0.4
3,073,722	+		GFF3010	0.23	-1.0
3,073,722	+		GFF3010	0.23	+0.3
3,073,735	-		GFF3010	0.23	-0.7
3,073,754	+		GFF3010	0.24	+0.6
3,073,765	+		GFF3010	0.24	+0.2
3,073,770	+		GFF3010	0.25	+1.6
3,073,773	-		GFF3010	0.25	+0.0
3,073,785	-		GFF3010	0.25	+0.1
3,073,786	+		GFF3010	0.25	-0.1
3,073,786	+		GFF3010	0.25	-1.5
3,073,806	-		GFF3010	0.26	+0.2
3,073,828	+		GFF3010	0.27	-0.2
3,073,833	+		GFF3010	0.28	-1.7
3,073,851	+		GFF3010	0.28	+0.0
3,073,851	+		GFF3010	0.28	-1.1
3,073,852	-		GFF3010	0.28	-0.9
3,073,856	+		GFF3010	0.29	-1.2
3,073,856	+		GFF3010	0.29	-0.3
3,073,859	-		GFF3010	0.29	+0.8
3,073,864	-		GFF3010	0.29	-1.6
3,073,864	-		GFF3010	0.29	-0.1
3,073,864	-		GFF3010	0.29	+0.6
3,073,864	-		GFF3010	0.29	-0.9
3,073,864	-		GFF3010	0.29	+0.3
3,073,875	+		GFF3010	0.29	-0.1
3,073,875	+		GFF3010	0.29	+0.8
3,073,880	+		GFF3010	0.30	+0.7
3,073,883	-		GFF3010	0.30	-1.6
3,073,883	-		GFF3010	0.30	+1.4
3,073,883	-		GFF3010	0.30	-1.2
3,073,890	+		GFF3010	0.30	+0.1
3,073,890	+		GFF3010	0.30	+0.9
3,073,890	+		GFF3010	0.30	-1.7
3,073,890	+		GFF3010	0.30	-1.5
3,073,892	+		GFF3010	0.30	-0.2
3,073,892	+		GFF3010	0.30	+0.9
3,073,892	+		GFF3010	0.30	-0.4
3,073,892	+		GFF3010	0.30	-0.4
3,073,892	+		GFF3010	0.30	-2.6
3,073,892	+		GFF3010	0.30	+1.4
3,073,892	+		GFF3010	0.30	+2.1
3,073,892	+		GFF3010	0.30	-0.5
3,073,892	+		GFF3010	0.30	-1.2
3,073,892	+		GFF3010	0.30	+0.5
3,073,892	+		GFF3010	0.30	-0.4
3,073,898	-		GFF3010	0.31	-0.5
3,073,898	-		GFF3010	0.31	+0.4
3,073,898	-		GFF3010	0.31	-1.4
3,073,900	-		GFF3010	0.31	-0.3
3,073,900	-		GFF3010	0.31	-0.9
3,073,900	-		GFF3010	0.31	-2.3
3,073,900	-		GFF3010	0.31	-1.1
3,073,900	-		GFF3010	0.31	+0.1
3,073,900	-		GFF3010	0.31	+0.4
3,073,900	-		GFF3010	0.31	+0.4
3,073,900	-		GFF3010	0.31	+0.5
3,073,902	+		GFF3010	0.31	+0.6
3,073,902	+		GFF3010	0.31	+0.6
3,073,908	+		GFF3010	0.31	-1.2
3,073,908	+		GFF3010	0.31	-1.6
3,073,910	-		GFF3010	0.31	-1.2
3,073,910	-		GFF3010	0.31	-0.4
3,073,910	-		GFF3010	0.31	+0.0
3,073,910	-		GFF3010	0.31	-1.4
3,073,910	-		GFF3010	0.31	+1.1
3,073,910	-		GFF3010	0.31	-2.0
3,073,916	-		GFF3010	0.31	-2.9
3,073,916	-		GFF3010	0.31	-1.3
3,073,916	-		GFF3010	0.31	-1.0
3,073,945	+		GFF3010	0.33	-1.3
3,073,945	+		GFF3010	0.33	-0.3
3,073,945	+		GFF3010	0.33	-0.1
3,073,946	-		GFF3010	0.33	-0.4
3,073,953	-		GFF3010	0.33	+0.2
3,073,982	-		GFF3010	0.34	-0.1
3,073,999	+		GFF3010	0.35	-0.6
3,073,999	+		GFF3010	0.35	+0.4
3,073,999	+		GFF3010	0.35	-0.5
3,073,999	+		GFF3010	0.35	-2.6
3,074,000	+		GFF3010	0.35	-0.0
3,074,005	+		GFF3010	0.35	-1.4
3,074,007	-		GFF3010	0.36	-0.4
3,074,007	-		GFF3010	0.36	-0.9
3,074,007	-		GFF3010	0.36	-2.4
3,074,007	-		GFF3010	0.36	-0.9
3,074,007	-		GFF3010	0.36	-2.0
3,074,007	-		GFF3010	0.36	+1.2
3,074,008	-		GFF3010	0.36	+0.2
3,074,013	-		GFF3010	0.36	-0.1
3,074,045	+		GFF3010	0.37	+0.6
3,074,048	-		GFF3010	0.37	-1.4
3,074,053	-		GFF3010	0.38	-0.9
3,074,066	-		GFF3010	0.38	+0.2
3,074,068	+		GFF3010	0.38	+0.7
3,074,073	+		GFF3010	0.39	-1.9
3,074,075	+		GFF3010	0.39	-0.4
3,074,076	-		GFF3010	0.39	-0.4
3,074,076	-		GFF3010	0.39	-0.9
3,074,081	-		GFF3010	0.39	-0.5
3,074,094	+		GFF3010	0.39	+1.5
3,074,107	-		GFF3010	0.40	-2.8
3,074,154	-		GFF3010	0.42	+0.2
3,074,155	+		GFF3010	0.42	+0.4
3,074,156	+		GFF3010	0.42	+0.1