Strain Fitness in Sphingobium sp. HT1-2 around GFF2960

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,019,839	-		GFF2957	0.31	+0.6
3,019,850	+		GFF2957	0.33	+0.0
3,019,855	+		GFF2957	0.34	-0.6
3,019,862	+		GFF2957	0.36	+0.3
3,019,863	-		GFF2957	0.36	-1.3
3,019,865	-		GFF2957	0.36	-0.5
3,019,866	+		GFF2957	0.37	-0.8
3,019,879	-		GFF2957	0.39	-1.1
3,019,919	+		GFF2957	0.48	+0.7
3,019,919	+		GFF2957	0.48	+0.6
3,019,927	-		GFF2957	0.49	-0.3
3,019,927	-		GFF2957	0.49	+0.5
3,019,927	-		GFF2957	0.49	+1.0
3,019,982	-		GFF2957	0.61	-1.2
3,019,987	-		GFF2957	0.62	-1.1
3,019,989	+		GFF2957	0.62	-1.2
3,019,992	-		GFF2957	0.63	-0.6
3,019,997	-		GFF2957	0.64	+1.2
3,019,997	-		GFF2957	0.64	-2.7
3,019,997	-		GFF2957	0.64	-1.2
3,020,014	-		GFF2957	0.68	+0.4
3,020,014	-		GFF2957	0.68	+0.5
3,020,016	-		GFF2957	0.68	-0.2
3,020,018	+		GFF2957	0.68	+1.8
3,020,031	+		GFF2957	0.71	+1.0
3,020,031	+		GFF2957	0.71	-1.3
3,020,031	+		GFF2957	0.71	-1.8
3,020,031	+		GFF2957	0.71	+0.9
3,020,031	+		GFF2957	0.71	+0.6
3,020,031	+		GFF2957	0.71	+0.8
3,020,031	+		GFF2957	0.71	+0.3
3,020,031	+		GFF2957	0.71	+0.0
3,020,031	+		GFF2957	0.71	+0.4
3,020,031	+		GFF2957	0.71	-1.2
3,020,032	+		GFF2957	0.71	-1.5
3,020,032	+		GFF2957	0.71	-0.6
3,020,038	+		GFF2957	0.72	+0.4
3,020,039	-		GFF2957	0.73	-1.0
3,020,039	-		GFF2957	0.73	-1.3
3,020,039	-		GFF2957	0.73	-0.3
3,020,039	-		GFF2957	0.73	+0.0
3,020,039	-		GFF2957	0.73	-0.5
3,020,039	-		GFF2957	0.73	+0.0
3,020,039	-		GFF2957	0.73	-0.6
3,020,039	-		GFF2957	0.73	-0.0
3,020,039	-		GFF2957	0.73	+0.8
3,020,039	-		GFF2957	0.73	-0.0
3,020,039	-		GFF2957	0.73	+0.2
3,020,039	-		GFF2957	0.73	+0.3
3,020,039	-		GFF2957	0.73	-0.6
3,020,039	-		GFF2957	0.73	-0.5
3,020,039	-		GFF2957	0.73	+0.1
3,020,039	-		GFF2957	0.73	+0.2
3,020,039	-		GFF2957	0.73	-1.4
3,020,039	-		GFF2957	0.73	-2.7
3,020,039	-		GFF2957	0.73	-1.7
3,020,039	-		GFF2957	0.73	+0.4
3,020,039	-		GFF2957	0.73	+0.4
3,020,044	+		GFF2957	0.74	-1.2
3,020,051	-		GFF2957	0.75	-0.2
3,020,052	-		GFF2957	0.75	-0.6
3,020,064	+		GFF2957	0.78	+0.6
3,020,067	-		GFF2957	0.79	-0.7
3,020,084	+		GFF2957	0.82	+0.6
3,020,086	+		GFF2957	0.82	-1.1
3,020,099	-		GFF2957	0.85	-0.4
3,020,114	-		GFF2957	0.88	-0.1
3,020,165	+				+0.9
3,020,165	+				-0.8
3,020,173	-				+0.4
3,020,175	+				-1.8
3,020,178	+				-0.5
3,020,178	-				-0.5
3,020,183	-				-0.4
3,020,210	+				-0.9
3,020,218	-				-1.2
3,020,232	+				+0.2
3,020,232	+				+0.7
3,020,232	+				+0.5
3,020,240	-				-0.7
3,020,240	-				-0.4
3,020,240	-				+0.6
3,020,242	+				-0.5
3,020,282	+				+0.0
3,020,282	-				-0.8
3,020,287	+				+2.0
3,020,293	-				-0.1
3,020,303	+				+0.3
3,020,303	+				-1.5
3,020,311	-				-0.5
3,020,347	+				-1.2
3,020,347	+				-2.2
3,020,390	-		GFF2958	0.15	-0.9
3,020,445	+		GFF2958	0.38	-1.2
3,020,445	+		GFF2958	0.38	-1.1
3,020,445	+		GFF2958	0.38	-0.1
3,020,453	-		GFF2958	0.41	-2.7
3,020,453	-		GFF2958	0.41	-0.3
3,020,453	-		GFF2958	0.41	-0.0
3,020,499	-		GFF2958	0.60	+0.4
3,020,507	+		GFF2958	0.63	+1.3
3,020,507	+		GFF2958	0.63	+0.0
3,020,509	+		GFF2958	0.64	-0.5
3,020,512	+		GFF2958	0.65	+0.3
3,020,515	-		GFF2958	0.67	-0.2
3,020,515	-		GFF2958	0.67	+0.4
3,020,515	-		GFF2958	0.67	-1.1
3,020,517	+		GFF2958	0.67	-2.3
3,020,525	-		GFF2958	0.71	+0.4
3,020,530	-		GFF2958	0.73	+0.8
3,020,565	+		GFF2958	0.87	+0.3
3,020,578	-				-0.6
3,020,583	+				-0.2
3,020,583	+				+0.3
3,020,609	+				+0.2
3,020,615	+				-0.2
3,020,626	+		GFF2959	0.13	+0.9
3,020,642	-		GFF2959	0.19	+0.3
3,020,676	-		GFF2959	0.33	-1.3
3,020,677	-		GFF2959	0.34	-1.4
3,020,683	-		GFF2959	0.36	-2.5
3,020,697	-		GFF2959	0.42	-1.8
3,020,702	-		GFF2959	0.44	-0.2
3,020,702	-		GFF2959	0.44	+0.8
3,020,712	-		GFF2959	0.48	-0.5
3,020,732	-		GFF2959	0.56	-0.7
3,020,732	-		GFF2959	0.56	-0.3
3,020,737	-		GFF2959	0.58	+0.1
3,020,747	+		GFF2959	0.63	-0.1
3,020,770	+		GFF2959	0.72	-0.8
3,020,770	+		GFF2959	0.72	+1.0
3,020,778	-		GFF2959	0.75	-0.8
3,020,841	+				-1.6
3,020,849	-				-1.2
3,020,858	-		GFF2960	0.11	-1.2
3,020,875	+		GFF2960	0.19	+0.4
3,020,893	+		GFF2960	0.29	-1.2
3,020,933	+		GFF2960	0.49	-0.0
3,020,938	+		GFF2960	0.52	-2.6
3,020,941	-		GFF2960	0.53	-0.2
3,020,946	-		GFF2960	0.56	-0.6
3,020,951	-		GFF2960	0.58	+0.6
3,020,977	-		GFF2960	0.72	-0.2
3,020,982	-		GFF2960	0.74	-0.4
3,021,017	+				-0.8
3,021,035	+				-1.4
3,021,036	+				-1.1
3,021,047	+				-0.3
3,021,049	+				-1.3
3,021,057	+				-0.7
3,021,057	+				+0.0
3,021,064	-				+1.1
3,021,071	+				-1.0
3,021,071	+				-0.2
3,021,071	+				-1.1
3,021,071	+				+0.4
3,021,071	+				+0.0
3,021,071	+				-0.0
3,021,077	+				-0.1
3,021,079	-				-0.2
3,021,079	-				-0.4
3,021,101	-		GFF2961	0.13	-1.2
3,021,108	+		GFF2961	0.14	-1.1
3,021,141	+		GFF2961	0.20	-0.2
3,021,146	+		GFF2961	0.21	-1.4
3,021,146	+		GFF2961	0.21	-0.4
3,021,147	+		GFF2961	0.21	-0.1
3,021,147	+		GFF2961	0.21	+0.8
3,021,151	+		GFF2961	0.22	+0.7
3,021,151	+		GFF2961	0.22	-0.8
3,021,154	-		GFF2961	0.22	-2.2
3,021,155	-		GFF2961	0.22	-2.3
3,021,155	-		GFF2961	0.22	+0.6
3,021,177	+		GFF2961	0.26	-2.4
3,021,185	+		GFF2961	0.28	-0.2
3,021,194	+		GFF2961	0.29	-0.2
3,021,194	+		GFF2961	0.29	-0.8
3,021,202	-		GFF2961	0.31	+1.3
3,021,202	-		GFF2961	0.31	-0.4
3,021,202	-		GFF2961	0.31	-2.8
3,021,202	-		GFF2961	0.31	-0.7
3,021,204	+		GFF2961	0.31	-1.2
3,021,212	-		GFF2961	0.32	+0.7
3,021,212	-		GFF2961	0.32	+0.8
3,021,257	-		GFF2961	0.40	-1.0
3,021,257	-		GFF2961	0.40	+1.3
3,021,257	-		GFF2961	0.40	-0.5
3,021,257	-		GFF2961	0.40	-1.2
3,021,271	+		GFF2961	0.43	-1.3
3,021,279	-		GFF2961	0.44	+0.6
3,021,309	+		GFF2961	0.50	+0.9
3,021,309	+		GFF2961	0.50	-0.4
3,021,309	+		GFF2961	0.50	+0.1
3,021,317	-		GFF2961	0.51	-0.3
3,021,317	-		GFF2961	0.51	-1.9
3,021,317	-		GFF2961	0.51	-0.8
3,021,317	-		GFF2961	0.51	+1.1
3,021,317	-		GFF2961	0.51	+2.4
3,021,317	-		GFF2961	0.51	-0.1
3,021,317	-		GFF2961	0.51	+0.0
3,021,327	+		GFF2961	0.53	+0.8
3,021,332	+		GFF2961	0.54	-0.2
3,021,333	-		GFF2961	0.54	-0.2
3,021,335	-		GFF2961	0.54	+0.3
3,021,369	+		GFF2961	0.60	+0.5
3,021,369	+		GFF2961	0.60	-2.0
3,021,369	+		GFF2961	0.60	-0.5
3,021,377	-		GFF2961	0.62	-0.7
3,021,377	-		GFF2961	0.62	-0.4
3,021,377	-		GFF2961	0.62	+0.9
3,021,377	-		GFF2961	0.62	-1.3
3,021,377	-		GFF2961	0.62	+0.9
3,021,405	+		GFF2961	0.66	+0.4
3,021,414	-		GFF2961	0.68	-1.3
3,021,421	+		GFF2961	0.69	+1.0
3,021,421	+		GFF2961	0.69	-2.2
3,021,429	-		GFF2961	0.71	-1.0
3,021,442	-		GFF2961	0.73	-0.7
3,021,458	+		GFF2961	0.76	+0.6
3,021,478	-		GFF2961	0.79	+0.4
3,021,482	+		GFF2961	0.80	-1.7
3,021,509	+		GFF2961	0.85	+0.1
3,021,510	-		GFF2961	0.85	+0.6
3,021,519	+		GFF2961	0.87	+1.2
3,021,519	+		GFF2961	0.87	-0.1
3,021,531	+		GFF2961	0.89	-0.2
3,021,539	-				+0.4
3,021,553	+				-0.2
3,021,581	+				+0.5
3,021,581	+				+0.4
3,021,583	-				-0.2
3,021,584	-				+0.2
3,021,584	-				-0.2
3,021,589	-				+0.2
3,021,589	-				-0.1
3,021,589	-				+0.9
3,021,607	-				-0.7
3,021,630	-				+0.7
3,021,631	+				-0.4
3,021,631	+				+0.3
3,021,631	+				+0.5
3,021,631	+				+0.6
3,021,639	-		GFF2962	0.11	-0.4
3,021,639	-		GFF2962	0.11	-0.0
3,021,639	-		GFF2962	0.11	+0.1
3,021,639	-		GFF2962	0.11	+0.9
3,021,639	-		GFF2962	0.11	+0.3
3,021,658	+		GFF2962	0.16	+0.9
3,021,658	+		GFF2962	0.16	+0.2
3,021,658	+		GFF2962	0.16	-0.8
3,021,661	-		GFF2962	0.17	-0.7
3,021,661	-		GFF2962	0.17	-0.3
3,021,662	-		GFF2962	0.17	+0.7
3,021,666	-		GFF2962	0.18	+0.4
3,021,666	-		GFF2962	0.18	+0.2
3,021,666	-		GFF2962	0.18	+0.8
3,021,666	-		GFF2962	0.18	+0.7
3,021,666	-		GFF2962	0.18	-1.4
3,021,666	-		GFF2962	0.18	-0.2
3,021,669	+		GFF2962	0.18	-1.3
3,021,677	-		GFF2962	0.20	-1.6
3,021,681	+		GFF2962	0.21	+0.2
3,021,686	+		GFF2962	0.22	+0.8
3,021,689	-		GFF2962	0.23	+0.5
3,021,691	+		GFF2962	0.24	-0.9
3,021,697	+		GFF2962	0.25	-0.3
3,021,705	-		GFF2962	0.27	-0.3
3,021,725	+		GFF2962	0.32	-1.0
3,021,747	+		GFF2962	0.37	-2.6
3,021,747	+		GFF2962	0.37	+0.1
3,021,747	+		GFF2962	0.37	+0.7
3,021,755	-		GFF2962	0.39	-1.1
3,021,755	-		GFF2962	0.39	-0.1
3,021,755	-		GFF2962	0.39	-0.2
3,021,777	-		GFF2962	0.44	-0.1
3,021,785	+		GFF2962	0.46	-1.3
3,021,793	-		GFF2962	0.48	-1.9
3,021,814	+		GFF2962	0.53	+0.8
3,021,816	-		GFF2962	0.53	+1.4
3,021,822	-		GFF2962	0.55	+0.1
3,021,833	+		GFF2962	0.57	-2.7
3,021,851	+		GFF2962	0.61	-0.0
3,021,856	-		GFF2962	0.63	-0.5
3,021,861	+		GFF2962	0.64	-1.3
3,021,861	+		GFF2962	0.64	+0.5
3,021,861	+		GFF2962	0.64	-1.6
3,021,861	+		GFF2962	0.64	+0.6
3,021,869	-		GFF2962	0.66	-0.6
3,021,879	+		GFF2962	0.68	+1.4
3,021,883	+		GFF2962	0.69	+1.6
3,021,883	+		GFF2962	0.69	+0.2
3,021,891	-		GFF2962	0.71	+0.2
3,021,891	-		GFF2962	0.71	-0.6
3,021,892	+		GFF2962	0.71	-0.2
3,021,915	-		GFF2962	0.77	+0.0
3,021,925	-		GFF2962	0.79	+1.6
3,021,930	-		GFF2962	0.80	-0.7
3,021,932	+		GFF2962	0.81	+0.2
3,021,932	+		GFF2962	0.81	+1.6
3,021,932	+		GFF2962	0.81	-1.1
3,021,937	+		GFF2962	0.82	-2.1
3,021,937	+		GFF2962	0.82	-0.5
3,021,940	-		GFF2962	0.83	-1.1
3,021,948	+		GFF2962	0.84	+1.9
3,021,948	+		GFF2962	0.84	-1.5
3,021,956	-		GFF2962	0.86	-0.2
3,021,956	-		GFF2962	0.86	+0.6
3,021,959	+		GFF2962	0.87	+0.4
3,021,967	-		GFF2962	0.89	+0.6
3,021,967	-		GFF2962	0.89	-2.1
3,021,986	+				-0.4
3,021,994	-				-0.9
3,021,998	+				-1.2
3,022,001	-				+1.1
3,022,018	+				+0.5
3,022,018	+				+0.6
3,022,018	+				+0.3
3,022,023	+				+1.0
3,022,028	+				-0.6
3,022,030	+				+1.6
3,022,031	+				-2.3